Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:20:39 (2607478): wrapper (7.7.26015): starting
05:20:39 (2607478): wrapper: running run_atlas (--nthreads 3)
[2025-12-14 05:20:39] Arguments: --nthreads 3
[2025-12-14 05:20:39] Threads: 3
[2025-12-14 05:20:39] Checking for CVMFS
[2025-12-14 05:20:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 05:20:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 05:20:39] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 05:20:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 05:20:39] 2.9.2.0 2238870 1423 76132 153984 1 56 20590055 36864001 0 130560 0 973484 99.990 51798 14199 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 05:20:39] CVMFS is ok
[2025-12-14 05:20:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 05:20:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 05:20:39] Further information can be found at the LHC@home message board.
[2025-12-14 05:20:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 05:20:39] Checking for apptainer binary...
[2025-12-14 05:20:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 05:20:39] Running /usr/bin/apptainer --version
[2025-12-14 05:20:39] apptainer version 1.4.1-1.1
[2025-12-14 05:20:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 05:20:39] magicA161a
[2025-12-14 05:20:39] apptainer works
[2025-12-14 05:20:39] Set ATHENA_PROC_NUMBER=3
[2025-12-14 05:20:39] Set ATHENA_CORE_NUMBER=3
[2025-12-14 05:20:39] Starting ATLAS job with PandaID=6929334773
[2025-12-14 05:20:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 07:15:00]  *** The last 200 lines of the pilot log: ***
[2025-12-14 07:15:00] 2025-12-14 06:14:08,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 07:15:00] 2025-12-14 06:14:08,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 07:15:00] 2025-12-14 06:14:08,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 07:15:00] 2025-12-14 06:14:08,442 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 07:15:00] 2025-12-14 06:14:08,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 07:15:00] 2025-12-14 06:14:08,442 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 07:15:00] 2025-12-14 06:14:08,442 | INFO     | job 6929334773 has completed (purged errors)
[2025-12-14 07:15:00] 2025-12-14 06:14:08,442 | INFO     | overall cleanup function is called
[2025-12-14 07:15:00] 2025-12-14 06:14:09,444 | INFO     | --- collectZombieJob: --- 10, [2617641]
[2025-12-14 07:15:00] 2025-12-14 06:14:09,444 | INFO     | zombie collector waiting for pid 2617641
[2025-12-14 07:15:00] 2025-12-14 06:14:09,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 07:15:00] 2025-12-14 06:14:09,444 | INFO     | collected zombie processes
[2025-12-14 07:15:00] 2025-12-14 06:14:09,444 | INFO     | will attempt to kill all subprocesses of pid=2617641
[2025-12-14 07:15:00] 2025-12-14 06:14:09,487 | INFO     | process IDs to be killed: [2617641] (in reverse order)
[2025-12-14 07:15:00] 2025-12-14 06:14:09,511 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 07:15:00] 2025-12-14 06:14:09,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 07:15:00] 2025-12-14 06:14:09,512 | INFO     | did not find any defunct processes belonging to 2617641
[2025-12-14 07:15:00] 2025-12-14 06:14:09,513 | INFO     | did not find any defunct processes belonging to 2617641
[2025-12-14 07:15:00] 2025-12-14 06:14:09,514 | INFO     | ready for new job
[2025-12-14 07:15:00] 2025-12-14 06:14:09,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 07:15:00] 2025-12-14 06:14:09,514 | INFO     | ***************************************
[2025-12-14 07:15:00] 2025-12-14 06:14:09,514 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 07:15:00] 2025-12-14 06:14:09,514 | INFO     | ***************************************
[2025-12-14 07:15:00] 2025-12-14 06:14:09,514 | INFO     | 
[2025-12-14 07:15:00] 2025-12-14 06:14:09,515 | INFO     | architecture information:
[2025-12-14 07:15:00] 2025-12-14 06:14:09,515 | INFO     | executing command: cat /etc/os-release
[2025-12-14 07:15:00] 2025-12-14 06:14:09,524 | INFO     | cat /etc/os-release:
[2025-12-14 07:15:00] NAME="CentOS Linux"
[2025-12-14 07:15:00] VERSION="7 (Core)"
[2025-12-14 07:15:00] ID="centos"
[2025-12-14 07:15:00] ID_LIKE="rhel fedora"
[2025-12-14 07:15:00] VERSION_ID="7"
[2025-12-14 07:15:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 07:15:00] ANSI_COLOR="0;31"
[2025-12-14 07:15:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 07:15:00] HOME_URL="https://www.centos.org/"
[2025-12-14 07:15:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 07:15:00] 
[2025-12-14 07:15:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 07:15:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 07:15:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 07:15:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 07:15:00] 
[2025-12-14 07:15:00] 2025-12-14 06:14:09,524 | INFO     | ***************************************
[2025-12-14 07:15:00] 2025-12-14 06:14:10,027 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 07:15:00] 2025-12-14 06:14:10,039 | INFO     | sufficient remaining disk space (384534839296 B)
[2025-12-14 07:15:00] 2025-12-14 06:14:10,040 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 07:15:00] 2025-12-14 06:14:10,040 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 07:15:00] 2025-12-14 06:14:10,040 | INFO     | update_server=False
[2025-12-14 07:15:00] 2025-12-14 06:14:10,040 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 07:15:00] 2025-12-14 06:14:10,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 07:15:00] 2025-12-14 06:14:10,040 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:15:00] 2025-12-14 06:14:10,040 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 07:15:00] 2025-12-14 06:14:10,040 | INFO     | aborting loop
[2025-12-14 07:15:00] 2025-12-14 06:14:10,593 | INFO     | all data control threads have been joined
[2025-12-14 07:15:00] 2025-12-14 06:14:10,876 | INFO     | all job control threads have been joined
[2025-12-14 07:15:00] 2025-12-14 06:14:11,045 | INFO     | [job] retrieve thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:11,046 | INFO     | [job] queue monitor thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:11,046 | INFO     | [job] job monitor thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:11,376 | INFO     | all payload control threads have been joined
[2025-12-14 07:15:00] 2025-12-14 06:14:11,449 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:11,455 | INFO     | [job] validate thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:11,500 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:11,555 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:11,599 | INFO     | [data] control thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:11,882 | INFO     | [job] control thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:12,044 | INFO     | [data] copytool_out thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:12,149 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:12,183 | INFO     | [payload] validate_post thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:12,382 | INFO     | [payload] control thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:12,419 | INFO     | [payload] failed_post thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:12,452 | INFO     | [data] copytool_in thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:12,584 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 07:15:00] 2025-12-14 06:14:16,590 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 07:15:00] 2025-12-14 06:14:39,646 | INFO     | PID=2611200 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 07:15:00] 2025-12-14 06:14:39,646 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 07:15:00] 2025-12-14 06:14:39,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 07:15:00] 2025-12-14 06:14:39,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 07:15:00] 2025-12-14 06:14:53,812 | INFO     | [monitor] cgroup control has ended
[2025-12-14 07:15:00] 2025-12-14 06:14:55,606 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140548550723392)>', '<ExcThread(monitor, started 140547838703360)>']
[2025-12-14 07:15:00] 2025-12-14 06:14:55,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 07:15:00] 2025-12-14 06:14:55,727 | INFO     | [monitor] control thread has ended
[2025-12-14 07:15:00] 2025-12-14 06:15:00,614 | INFO     | all workflow threads have been joined
[2025-12-14 07:15:00] 2025-12-14 06:15:00,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 07:15:00] 2025-12-14 06:15:00,615 | INFO     | traces error code: 0
[2025-12-14 07:15:00] 2025-12-14 06:15:00,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 07:15:00] 2025-12-14 06:15:00,673 [wrapper] ==== pilot stdout END ====
[2025-12-14 07:15:00] 2025-12-14 06:15:00,675 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 07:15:00] 2025-12-14 06:15:00,678 [wrapper] pilotpid: 2611200
[2025-12-14 07:15:00] 2025-12-14 06:15:00,680 [wrapper] Pilot exit status: 0
[2025-12-14 07:15:00] 2025-12-14 06:15:00,687 [wrapper] pandaids: 6929334773
[2025-12-14 07:15:00] 2025-12-14 06:15:00,704 [wrapper] cleanup supervisor_pilot 2632166 2611201
[2025-12-14 07:15:00] 2025-12-14 06:15:00,706 [wrapper] Test setup, not cleaning
[2025-12-14 07:15:00] 2025-12-14 06:15:00,709 [wrapper] apfmon messages muted
[2025-12-14 07:15:00] 2025-12-14 06:15:00,711 [wrapper] ==== wrapper stdout END ====
[2025-12-14 07:15:00] 2025-12-14 06:15:00,713 [wrapper] ==== wrapper stderr END ====
[2025-12-14 07:15:00]  *** Error codes and diagnostics ***
[2025-12-14 07:15:00]     "exeErrorCode": 0,
[2025-12-14 07:15:00]     "exeErrorDiag": "",
[2025-12-14 07:15:00]     "pilotErrorCode": 0,
[2025-12-14 07:15:00]     "pilotErrorDiag": "",
[2025-12-14 07:15:00]  *** Listing of results directory ***
[2025-12-14 07:15:00] total 441004
[2025-12-14 07:15:00] -rwx------ 1 boinc boinc     36322 Dec 13 14:48 runpilot2-wrapper.sh
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc    579449 Dec 13 14:50 pilot3.tar.gz
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc      5112 Dec 13 14:53 queuedata.json
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc       100 Dec 14 05:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 07:15:00] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 05:20 run_atlas
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc       105 Dec 14 05:20 job.xml
[2025-12-14 07:15:00] -rw-r--r-- 2 boinc boinc 224317444 Dec 14 05:20 EVNT.47898761._000288.pool.root.1
[2025-12-14 07:15:00] -rw-r--r-- 2 boinc boinc    592396 Dec 14 05:20 input.tar.gz
[2025-12-14 07:15:00] -rw-r--r-- 2 boinc boinc     15847 Dec 14 05:20 start_atlas.sh
[2025-12-14 07:15:00] drwxrwx--x 2 boinc boinc      4096 Dec 14 05:20 shared
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc         0 Dec 14 05:20 boinc_setup_complete
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc      6448 Dec 14 05:20 init_data.xml
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc         0 Dec 14 05:20 boinc_lockfile
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc      2504 Dec 14 05:20 pandaJob.out
[2025-12-14 07:15:00] -rw------- 1 boinc boinc    991728 Dec 14 05:20 agis_schedconf.cvmfs.json
[2025-12-14 07:15:00] -rw------- 1 boinc boinc   1516240 Dec 14 05:20 agis_ddmendpoints.agis.ALL.json
[2025-12-14 07:15:00] drwx------ 5 boinc boinc      4096 Dec 14 05:20 pilot3
[2025-12-14 07:15:00] -rw------- 1 boinc boinc 220857637 Dec 14 07:13 HITS.47898763._005932.pool.root.1
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc       529 Dec 14 07:13 boinc_task_state.xml
[2025-12-14 07:15:00] -rw------- 1 boinc boinc      1027 Dec 14 07:13 memory_monitor_summary.json
[2025-12-14 07:15:00] -rw------- 1 boinc boinc    271493 Dec 14 07:14 log.47898763._005932.job.log.tgz.1
[2025-12-14 07:15:00] -rw------- 1 boinc boinc      7749 Dec 14 07:14 heartbeat.json
[2025-12-14 07:15:00] -rw------- 1 boinc boinc        95 Dec 14 07:14 pilot_heartbeat.json
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc        27 Dec 14 07:14 wrapper_checkpoint.txt
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc      8192 Dec 14 07:14 boinc_mmap_file
[2025-12-14 07:15:00] -rw------- 1 boinc boinc      4752 Dec 14 07:15 pilotlog.txt
[2025-12-14 07:15:00] -rw------- 1 boinc boinc    982447 Dec 14 07:15 log.47898763._005932.job.log.1
[2025-12-14 07:15:00] -rw------- 1 boinc boinc       357 Dec 14 07:15 output.list
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc       620 Dec 14 07:15 runtime_log
[2025-12-14 07:15:00] -rw------- 1 boinc boinc   1269760 Dec 14 07:15 result.tar.gz
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc      8917 Dec 14 07:15 runtime_log.err
[2025-12-14 07:15:00] -rw------- 1 boinc boinc       663 Dec 14 07:15 1kqMDmZAfo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxvTKDm2Wws4n.diag
[2025-12-14 07:15:00] -rw-r--r-- 1 boinc boinc     11421 Dec 14 07:15 stderr.txt
[2025-12-14 07:15:00] HITS file was successfully produced:
[2025-12-14 07:15:00] -rw------- 1 boinc boinc 220857637 Dec 14 07:13 shared/HITS.pool.root.1
[2025-12-14 07:15:00]  *** Contents of shared directory: ***
[2025-12-14 07:15:00] total 436592
[2025-12-14 07:15:00] -rw-r--r-- 2 boinc boinc 224317444 Dec 14 05:20 ATLAS.root_0
[2025-12-14 07:15:00] -rw-r--r-- 2 boinc boinc    592396 Dec 14 05:20 input.tar.gz
[2025-12-14 07:15:00] -rw-r--r-- 2 boinc boinc     15847 Dec 14 05:20 start_atlas.sh
[2025-12-14 07:15:00] -rw------- 1 boinc boinc 220857637 Dec 14 07:13 HITS.pool.root.1
[2025-12-14 07:15:00] -rw------- 1 boinc boinc   1269760 Dec 14 07:15 result.tar.gz
07:15:02 (2607478): run_atlas exited; CPU time 19778.161480
07:15:02 (2607478): called boinc_finish(0)

</stderr_txt>
]]>

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