Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:37:29 (8653): wrapper (7.7.26015): starting
16:37:29 (8653): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 16:37:29] Arguments: --nthreads 12
[2025-12-13 16:37:29] Threads: 12
[2025-12-13 16:37:29] Checking for CVMFS
[2025-12-13 16:37:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 16:37:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 16:37:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 16:37:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 16:37:29] 2.11.2.0 2998 128424 97608 153973 3 58 13673464 20275201 1 130560 0 53127398 99.955 5703967 35310 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 16:37:29] CVMFS is ok
[2025-12-13 16:37:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 16:37:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 16:37:29] Further information can be found at the LHC@home message board.
[2025-12-13 16:37:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 16:37:29] Checking for apptainer binary...
[2025-12-13 16:37:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 16:37:29] Running /usr/bin/apptainer --version
[2025-12-13 16:37:29] apptainer version 1.3.2-1.el7
[2025-12-13 16:37:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 16:37:31] c-205-12.aglt2.org
[2025-12-13 16:37:31] apptainer works
[2025-12-13 16:37:31] Set ATHENA_PROC_NUMBER=12
[2025-12-13 16:37:31] Set ATHENA_CORE_NUMBER=12
[2025-12-13 16:37:31] Starting ATLAS job with PandaID=6929333627
[2025-12-13 16:37:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 18:19:02]  *** The last 200 lines of the pilot log: ***
[2025-12-13 18:19:02]  protocol_id=None
[2025-12-13 18:19:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 18:19:02]  replicas=None
[2025-12-13 18:19:02]  scope=mc23_13p6TeV
[2025-12-13 18:19:02]  status=None
[2025-12-13 18:19:02]  status_code=0
[2025-12-13 18:19:02]  storage_token=
[2025-12-13 18:19:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929333627/log.47898763._005347.job.log.tgz.1
[2025-12-13 18:19:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/ec/log.47898763._005347.job.log.tgz.1
[2025-12-13 18:19:02]  workdir=None
[2025-12-13 18:19:02] ]
[2025-12-13 18:19:02] 2025-12-13 23:17:59,605 | INFO     | transferring file log.47898763._005347.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929333627/log.47898763._005347.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 18:19:02] 2025-12-13 23:17:59,605 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929333627/log.47898763._005347.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._005347.job
[2025-12-13 18:19:02] 2025-12-13 23:17:59,628 | INFO     | adding to output.list: log.47898763._005347.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/ec/log.47898763._005347.job.log.tg
[2025-12-13 18:19:02] 2025-12-13 23:17:59,629 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 18:19:02] 2025-12-13 23:17:59,629 | INFO     | summary of transferred files:
[2025-12-13 18:19:02] 2025-12-13 23:17:59,629 | INFO     |  -- lfn=log.47898763._005347.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 18:19:02] 2025-12-13 23:17:59,630 | INFO     | stage-out finished correctly
[2025-12-13 18:19:02] 2025-12-13 23:18:00,379 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 18:19:02] 2025-12-13 23:18:01,236 | INFO     | time since job start (6015s) is within the limit (174528.0s)
[2025-12-13 18:19:02] 2025-12-13 23:18:01,346 | INFO     | job 6929333627 has state=finished
[2025-12-13 18:19:02] 2025-12-13 23:18:01,346 | INFO     | preparing for final server update for job 6929333627 in state='finished'
[2025-12-13 18:19:02] 2025-12-13 23:18:01,347 | INFO     | this job has now completed (state=finished)
[2025-12-13 18:19:02] 2025-12-13 23:18:01,347 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 18:19:02] 2025-12-13 23:18:01,347 | INFO     | log transfer has been attempted: DONE
[2025-12-13 18:19:02] 2025-12-13 23:18:01,347 | INFO     | job 6929333627 has finished - writing final server update
[2025-12-13 18:19:02] 2025-12-13 23:18:01,348 | INFO     | total number of processed events: 400 (read)
[2025-12-13 18:19:02] 2025-12-13 23:18:01,349 | INFO     | executing command: lscpu
[2025-12-13 18:19:02] 2025-12-13 23:18:01,374 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 18:19:02] 2025-12-13 23:18:02,970 | WARNING  | process 18741 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 18:19:02] 2025-12-13 23:18:02,970 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929333627/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 18:19:02] 2025-12-13 23:18:03,059 | INFO     | number of running child processes to parent process 18741: 1
[2025-12-13 18:19:02] 2025-12-13 23:18:03,059 | INFO     | maximum number of monitored processes: 6
[2025-12-13 18:19:02] 2025-12-13 23:18:03,241 | INFO     | time since job start (6017s) is within the limit (174528.0s)
[2025-12-13 18:19:02] 2025-12-13 23:18:05,246 | INFO     | time since job start (6019s) is within the limit (174528.0s)
[2025-12-13 18:19:02] 2025-12-13 23:18:05,562 | INFO     | monitor loop #448: job 0:6929333627 is in state 'finished'
[2025-12-13 18:19:02] 2025-12-13 23:18:05,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 18:19:02] 2025-12-13 23:18:07,250 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 18:19:02] 2025-12-13 23:18:07,252 | INFO     | time since job start (6021s) is within the limit (174528.0s)
[2025-12-13 18:19:02] 2025-12-13 23:18:07,254 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-13 18:19:02] 2025-12-13 23:18:07,257 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929333627/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 18:19:02] 2025-12-13 23:18:07,258 | INFO     | extracted standard info from prmon json
[2025-12-13 18:19:02] 2025-12-13 23:18:07,258 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 18:19:02] 2025-12-13 23:18:07,258 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 18:19:02] 2025-12-13 23:18:07,258 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 18:19:02] 2025-12-13 23:18:07,258 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 18:19:02] 2025-12-13 23:18:07,261 | INFO     | fitting pss+swap vs Time
[2025-12-13 18:19:02] 2025-12-13 23:18:07,261 | INFO     | sum of square deviations: 241429643.0
[2025-12-13 18:19:02] 2025-12-13 23:18:07,262 | INFO     | sum of deviations: -13994148012.500004
[2025-12-13 18:19:02] 2025-12-13 23:18:07,262 | INFO     | mean x: 1765664975.5
[2025-12-13 18:19:02] 2025-12-13 23:18:07,262 | INFO     | mean y: 2790874.5760869565
[2025-12-13 18:19:02] 2025-12-13 23:18:07,262 | INFO     | intersect: 102347211802.35002
[2025-12-13 18:19:02] 2025-12-13 23:18:07,262 | INFO     | chi2: 0.10640280463261689
[2025-12-13 18:19:02] 2025-12-13 23:18:07,262 | INFO     | current memory leak: -57.96 B/s (using 92 data points, chi2=0.11)
[2025-12-13 18:19:02] 2025-12-13 23:18:07,263 | INFO     | could have reported an average CPU frequency of 2120 MHz (7 samples)
[2025-12-13 18:19:02] 2025-12-13 23:18:07,263 | INFO     | ..............................
[2025-12-13 18:19:02] 2025-12-13 23:18:07,263 | INFO     | . Timing measurements:
[2025-12-13 18:19:02] 2025-12-13 23:18:07,263 | INFO     | . get job = 0 s
[2025-12-13 18:19:02] 2025-12-13 23:18:07,263 | INFO     | . initial setup = 2 s
[2025-12-13 18:19:02] 2025-12-13 23:18:07,263 | INFO     | . payload setup = 7 s
[2025-12-13 18:19:02] 2025-12-13 23:18:07,263 | INFO     | . stage-in = 0 s
[2025-12-13 18:19:02] 2025-12-13 23:18:07,263 | INFO     | . payload execution = 5983 s
[2025-12-13 18:19:02] 2025-12-13 23:18:07,264 | INFO     | . stage-out = 0 s
[2025-12-13 18:19:02] 2025-12-13 23:18:07,264 | INFO     | . log creation = 0 s
[2025-12-13 18:19:02] 2025-12-13 23:18:07,264 | INFO     | ..............................
[2025-12-13 18:19:02] 2025-12-13 23:18:07,455 | INFO     | 
[2025-12-13 18:19:02] 2025-12-13 23:18:07,455 | INFO     | job summary report
[2025-12-13 18:19:02] 2025-12-13 23:18:07,455 | INFO     | --------------------------------------------------
[2025-12-13 18:19:02] 2025-12-13 23:18:07,455 | INFO     | PanDA job id: 6929333627
[2025-12-13 18:19:02] 2025-12-13 23:18:07,456 | INFO     | task id: 47898763
[2025-12-13 18:19:02] 2025-12-13 23:18:07,456 | INFO     | errors: (none)
[2025-12-13 18:19:02] 2025-12-13 23:18:07,456 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 18:19:02] 2025-12-13 23:18:07,456 | INFO     | pilot state: finished 
[2025-12-13 18:19:02] 2025-12-13 23:18:07,456 | INFO     | transexitcode: 0
[2025-12-13 18:19:02] 2025-12-13 23:18:07,456 | INFO     | exeerrorcode: 0
[2025-12-13 18:19:02] 2025-12-13 23:18:07,457 | INFO     | exeerrordiag: 
[2025-12-13 18:19:02] 2025-12-13 23:18:07,457 | INFO     | exitcode: 0
[2025-12-13 18:19:02] 2025-12-13 23:18:07,457 | INFO     | exitmsg: OK
[2025-12-13 18:19:02] 2025-12-13 23:18:07,457 | INFO     | cpuconsumptiontime: 65087 s
[2025-12-13 18:19:02] 2025-12-13 23:18:07,457 | INFO     | nevents: 400
[2025-12-13 18:19:02] 2025-12-13 23:18:07,457 | INFO     | neventsw: 0
[2025-12-13 18:19:02] 2025-12-13 23:18:07,457 | INFO     | pid: 18741
[2025-12-13 18:19:02] 2025-12-13 23:18:07,458 | INFO     | pgrp: 18741
[2025-12-13 18:19:02] 2025-12-13 23:18:07,458 | INFO     | corecount: 12
[2025-12-13 18:19:02] 2025-12-13 23:18:07,458 | INFO     | event service: False
[2025-12-13 18:19:02] 2025-12-13 23:18:07,458 | INFO     | sizes: {0: 2283951, 5: 2284213, 11: 2284269, 5994: 2310990, 5995: 2310989, 5997: 2320043, 5998: 2320227, 6004: 2320421}
[2025-12-13 18:19:02] 2025-12-13 23:18:07,458 | INFO     | --------------------------------------------------
[2025-12-13 18:19:02] 2025-12-13 23:18:07,458 | INFO     | 
[2025-12-13 18:19:02] 2025-12-13 23:18:07,459 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 18:19:02] 2025-12-13 23:18:07,485 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,486 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,486 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,486 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,486 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,486 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 18:19:02] 2025-12-13 23:18:07,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 18:19:02] 2025-12-13 23:18:07,489 | INFO     | job 6929333627 has completed (purged errors)
[2025-12-13 18:19:02] 2025-12-13 23:18:07,489 | INFO     | overall cleanup function is called
[2025-12-13 18:19:02] 2025-12-13 23:18:08,371 | INFO     | PID=12326 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 18:19:02] 2025-12-13 23:18:08,497 | INFO     | --- collectZombieJob: --- 10, [18741]
[2025-12-13 18:19:02] 2025-12-13 23:18:08,497 | INFO     | zombie collector waiting for pid 18741
[2025-12-13 18:19:02] 2025-12-13 23:18:08,497 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 18:19:02] 2025-12-13 23:18:08,497 | INFO     | collected zombie processes
[2025-12-13 18:19:02] 2025-12-13 23:18:08,497 | INFO     | will attempt to kill all subprocesses of pid=18741
[2025-12-13 18:19:02] 2025-12-13 23:18:08,586 | INFO     | process IDs to be killed: [18741] (in reverse order)
[2025-12-13 18:19:02] 2025-12-13 23:18:08,637 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 18:19:02] 2025-12-13 23:18:08,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 18:19:02] 2025-12-13 23:18:08,641 | INFO     | did not find any defunct processes belonging to 18741
[2025-12-13 18:19:02] 2025-12-13 23:18:08,643 | INFO     | did not find any defunct processes belonging to 18741
[2025-12-13 18:19:02] 2025-12-13 23:18:08,643 | INFO     | ready for new job
[2025-12-13 18:19:02] 2025-12-13 23:18:08,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 18:19:02] 2025-12-13 23:18:08,645 | INFO     | ***************************************
[2025-12-13 18:19:02] 2025-12-13 23:18:08,645 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 18:19:02] 2025-12-13 23:18:08,645 | INFO     | ***************************************
[2025-12-13 18:19:02] 2025-12-13 23:18:08,645 | INFO     | 
[2025-12-13 18:19:02] 2025-12-13 23:18:08,645 | INFO     | architecture information:
[2025-12-13 18:19:02] 2025-12-13 23:18:08,646 | INFO     | executing command: cat /etc/os-release
[2025-12-13 18:19:02] 2025-12-13 23:18:08,660 | INFO     | cat /etc/os-release:
[2025-12-13 18:19:02] NAME="CentOS Linux"
[2025-12-13 18:19:02] VERSION="7 (Core)"
[2025-12-13 18:19:02] ID="centos"
[2025-12-13 18:19:02] ID_LIKE="rhel fedora"
[2025-12-13 18:19:02] VERSION_ID="7"
[2025-12-13 18:19:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 18:19:02] ANSI_COLOR="0;31"
[2025-12-13 18:19:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 18:19:02] HOME_URL="https://www.centos.org/"
[2025-12-13 18:19:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 18:19:02] 
[2025-12-13 18:19:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 18:19:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 18:19:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 18:19:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 18:19:02] 
[2025-12-13 18:19:02] 2025-12-13 23:18:08,661 | INFO     | ***************************************
[2025-12-13 18:19:02] 2025-12-13 23:18:09,164 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 18:19:02] 2025-12-13 23:18:09,181 | INFO     | sufficient remaining disk space (29316087808 B)
[2025-12-13 18:19:02] 2025-12-13 23:18:09,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 18:19:02] 2025-12-13 23:18:09,181 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 18:19:02] 2025-12-13 23:18:09,182 | INFO     | update_server=False
[2025-12-13 18:19:02] 2025-12-13 23:18:09,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 18:19:02] 2025-12-13 23:18:09,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 18:19:02] 2025-12-13 23:18:09,182 | INFO     | aborting loop
[2025-12-13 18:19:02] 2025-12-13 23:18:09,183 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-13 18:19:02] 2025-12-13 23:18:09,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 18:19:02] 2025-12-13 23:18:09,183 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 18:19:02] 2025-12-13 23:18:09,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 18:19:02] 2025-12-13 23:18:09,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 18:19:02] 2025-12-13 23:18:09,254 | INFO     | all data control threads have been joined
[2025-12-13 18:19:02] 2025-12-13 23:18:09,508 | INFO     | all job control threads have been joined
[2025-12-13 18:19:02] 2025-12-13 23:18:10,188 | INFO     | [job] retrieve thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:10,189 | INFO     | [job] queue monitor thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:10,190 | INFO     | [job] job monitor thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:10,205 | INFO     | all payload control threads have been joined
[2025-12-13 18:19:02] 2025-12-13 23:18:10,227 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 18:19:02] 2025-12-13 23:18:10,245 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:10,260 | INFO     | [data] control thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:10,516 | INFO     | [job] control thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:10,953 | INFO     | [data] copytool_in thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:10,965 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 18:19:02] 2025-12-13 23:18:11,145 | INFO     | [payload] failed_post thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:11,210 | INFO     | [payload] control thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:11,329 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:11,353 | INFO     | [job] validate thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:11,497 | INFO     | [payload] validate_post thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:11,535 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:11,678 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:12,232 | INFO     | [data] copytool_out thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:14,972 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 18:19:02] 2025-12-13 23:18:55,374 | INFO     | [monitor] cgroup control has ended
[2025-12-13 18:19:02] 2025-12-13 23:18:57,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140630434559808)>', '<ExcThread(monitor, started 140629535336192)>']
[2025-12-13 18:19:02] 2025-12-13 23:18:57,362 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 18:19:02] 2025-12-13 23:18:57,362 | INFO     | [monitor] control thread has ended
[2025-12-13 18:19:02] 2025-12-13 23:19:02,138 | INFO     | all workflow threads have been joined
[2025-12-13 18:19:02] 2025-12-13 23:19:02,138 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 18:19:02] 2025-12-13 23:19:02,138 | INFO     | traces error code: 0
[2025-12-13 18:19:02] 2025-12-13 23:19:02,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 18:19:02] 2025-12-13 23:19:02,237 [wrapper] ==== pilot stdout END ====
[2025-12-13 18:19:02] 2025-12-13 23:19:02,241 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 18:19:02] 2025-12-13 23:19:02,245 [wrapper] pilotpid: 12326
[2025-12-13 18:19:02] 2025-12-13 23:19:02,249 [wrapper] Pilot exit status: 0
[2025-12-13 18:19:02] 2025-12-13 23:19:02,266 [wrapper] pandaids: 6929333627
[2025-12-13 18:19:02] 2025-12-13 23:19:02,315 [wrapper] cleanup supervisor_pilot 18107 12327
[2025-12-13 18:19:02] 2025-12-13 23:19:02,319 [wrapper] Test setup, not cleaning
[2025-12-13 18:19:02] 2025-12-13 23:19:02,323 [wrapper] apfmon messages muted
[2025-12-13 18:19:02] 2025-12-13 23:19:02,327 [wrapper] ==== wrapper stdout END ====
[2025-12-13 18:19:02] 2025-12-13 23:19:02,331 [wrapper] ==== wrapper stderr END ====
[2025-12-13 18:19:02]  *** Error codes and diagnostics ***
[2025-12-13 18:19:02]     "exeErrorCode": 0,
[2025-12-13 18:19:02]     "exeErrorDiag": "",
[2025-12-13 18:19:02]     "pilotErrorCode": 0,
[2025-12-13 18:19:02]     "pilotErrorDiag": "",
[2025-12-13 18:19:02]  *** Listing of results directory ***
[2025-12-13 18:19:02] total 441532
[2025-12-13 18:19:02] -rwx------ 1 boincer umatlas     36322 Dec 13 08:48 runpilot2-wrapper.sh
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 08:50 pilot3.tar.gz
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 08:53 queuedata.json
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas       100 Dec 13 16:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 18:19:02] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 16:37 run_atlas
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas       105 Dec 13 16:37 job.xml
[2025-12-13 18:19:02] -rw-r--r-- 2 boincer umatlas 226369231 Dec 13 16:37 EVNT.47898761._000079.pool.root.1
[2025-12-13 18:19:02] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 16:37 start_atlas.sh
[2025-12-13 18:19:02] drwxrwx--x 2 boincer umatlas      4096 Dec 13 16:37 shared
[2025-12-13 18:19:02] -rw-r--r-- 2 boincer umatlas    592389 Dec 13 16:37 input.tar.gz
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas         0 Dec 13 16:37 boinc_lockfile
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas      2504 Dec 13 16:37 pandaJob.out
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas        57 Dec 13 16:37 setup.sh.local
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas    991736 Dec 13 16:37 agis_schedconf.cvmfs.json
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas   1516240 Dec 13 16:37 agis_ddmendpoints.agis.ALL.json
[2025-12-13 18:19:02] drwx------ 5 boincer umatlas      4096 Dec 13 16:37 pilot3
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas 219296201 Dec 13 18:17 HITS.47898763._005347.pool.root.1
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas       529 Dec 13 18:17 boinc_task_state.xml
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas      1046 Dec 13 18:17 memory_monitor_summary.json
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas    414923 Dec 13 18:17 log.47898763._005347.job.log.tgz.1
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas        95 Dec 13 18:18 pilot_heartbeat.json
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas      7847 Dec 13 18:18 heartbeat.json
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas      5953 Dec 13 18:18 init_data.xml
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas        27 Dec 13 18:18 wrapper_checkpoint.txt
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 18:18 boinc_mmap_file
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas      4552 Dec 13 18:19 pilotlog.txt
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas    856652 Dec 13 18:19 log.47898763._005347.job.log.1
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas       357 Dec 13 18:19 output.list
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas       620 Dec 13 18:19 runtime_log
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas   1290240 Dec 13 18:19 result.tar.gz
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas       659 Dec 13 18:19 gHhKDm79eo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMsTKDmQ2AZOo.diag
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 18:19 runtime_log.err
[2025-12-13 18:19:02] -rw-r--r-- 1 boincer umatlas     21884 Dec 13 18:19 stderr.txt
[2025-12-13 18:19:02] HITS file was successfully produced:
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas 219296201 Dec 13 18:17 shared/HITS.pool.root.1
[2025-12-13 18:19:02]  *** Contents of shared directory: ***
[2025-12-13 18:19:02] total 437084
[2025-12-13 18:19:02] -rw-r--r-- 2 boincer umatlas 226369231 Dec 13 16:37 ATLAS.root_0
[2025-12-13 18:19:02] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 16:37 start_atlas.sh
[2025-12-13 18:19:02] -rw-r--r-- 2 boincer umatlas    592389 Dec 13 16:37 input.tar.gz
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas 219296201 Dec 13 18:17 HITS.pool.root.1
[2025-12-13 18:19:02] -rw------- 1 boincer umatlas   1290240 Dec 13 18:19 result.tar.gz
18:19:03 (8653): run_atlas exited; CPU time 65066.645081
18:19:03 (8653): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN