Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:21:25 (1926): wrapper (7.7.26015): starting
16:21:25 (1926): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 16:21:25] Arguments: --nthreads 12
[2025-12-13 16:21:25] Threads: 12
[2025-12-13 16:21:25] Checking for CVMFS
[2025-12-13 16:21:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 16:21:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 16:21:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 16:21:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 16:21:25] 2.11.2.0 2991 312649 95492 153973 3 56 16140339 20275200 1 130560 1 137859792 99.959 19071905 15402 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 16:21:25] CVMFS is ok
[2025-12-13 16:21:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 16:21:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 16:21:25] Further information can be found at the LHC@home message board.
[2025-12-13 16:21:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 16:21:25] Checking for apptainer binary...
[2025-12-13 16:21:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 16:21:25] Running /usr/bin/apptainer --version
[2025-12-13 16:21:25] apptainer version 1.3.2-1.el7
[2025-12-13 16:21:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 16:21:27] c-205-32.aglt2.org
[2025-12-13 16:21:27] apptainer works
[2025-12-13 16:21:27] Set ATHENA_PROC_NUMBER=12
[2025-12-13 16:21:27] Set ATHENA_CORE_NUMBER=12
[2025-12-13 16:21:27] Starting ATLAS job with PandaID=6929311557
[2025-12-13 16:21:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:42:54]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:42:54]  mtime=0
[2025-12-13 17:42:54]  protocol_id=None
[2025-12-13 17:42:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 17:42:54]  replicas=None
[2025-12-13 17:42:54]  scope=mc23_13p6TeV
[2025-12-13 17:42:54]  status=None
[2025-12-13 17:42:54]  status_code=0
[2025-12-13 17:42:54]  storage_token=
[2025-12-13 17:42:54]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929311557/log.47886831._005568.job.log.tgz.1
[2025-12-13 17:42:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/64/log.47886831._005568.job.log.tgz.1
[2025-12-13 17:42:54]  workdir=None
[2025-12-13 17:42:54] ]
[2025-12-13 17:42:54] 2025-12-13 22:42:03,303 | INFO     | transferring file log.47886831._005568.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929311557/log.47886831._005568.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 17:42:54] 2025-12-13 22:42:03,303 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929311557/log.47886831._005568.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._005568.job
[2025-12-13 17:42:54] 2025-12-13 22:42:03,325 | INFO     | adding to output.list: log.47886831._005568.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/64/log.47886831._005568.job.log.tg
[2025-12-13 17:42:54] 2025-12-13 22:42:03,326 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 17:42:54] 2025-12-13 22:42:03,327 | INFO     | summary of transferred files:
[2025-12-13 17:42:54] 2025-12-13 22:42:03,327 | INFO     |  -- lfn=log.47886831._005568.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 17:42:54] 2025-12-13 22:42:03,327 | INFO     | stage-out finished correctly
[2025-12-13 17:42:54] 2025-12-13 22:42:04,808 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 17:42:54] 2025-12-13 22:42:04,960 | INFO     | job 6929311557 has state=finished
[2025-12-13 17:42:54] 2025-12-13 22:42:04,960 | INFO     | preparing for final server update for job 6929311557 in state='finished'
[2025-12-13 17:42:54] 2025-12-13 22:42:04,961 | INFO     | this job has now completed (state=finished)
[2025-12-13 17:42:54] 2025-12-13 22:42:04,961 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 17:42:54] 2025-12-13 22:42:04,961 | INFO     | log transfer has been attempted: DONE
[2025-12-13 17:42:54] 2025-12-13 22:42:04,961 | INFO     | job 6929311557 has finished - writing final server update
[2025-12-13 17:42:54] 2025-12-13 22:42:04,962 | INFO     | total number of processed events: 400 (read)
[2025-12-13 17:42:54] 2025-12-13 22:42:04,963 | INFO     | executing command: lscpu
[2025-12-13 17:42:54] 2025-12-13 22:42:04,989 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 17:42:54] 2025-12-13 22:42:05,068 | INFO     | time since job start (4824s) is within the limit (174528.0s)
[2025-12-13 17:42:54] 2025-12-13 22:42:06,050 | WARNING  | process 12102 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 17:42:54] 2025-12-13 22:42:06,050 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929311557/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:42:54] 2025-12-13 22:42:06,154 | INFO     | number of running child processes to parent process 12102: 1
[2025-12-13 17:42:54] 2025-12-13 22:42:06,155 | INFO     | maximum number of monitored processes: 6
[2025-12-13 17:42:54] 2025-12-13 22:42:07,074 | INFO     | time since job start (4826s) is within the limit (174528.0s)
[2025-12-13 17:42:54] 2025-12-13 22:42:08,658 | INFO     | monitor loop #359: job 0:6929311557 is in state 'finished'
[2025-12-13 17:42:54] 2025-12-13 22:42:08,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 17:42:54] 2025-12-13 22:42:09,079 | INFO     | time since job start (4828s) is within the limit (174528.0s)
[2025-12-13 17:42:54] 2025-12-13 22:42:10,587 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 17:42:54] 2025-12-13 22:42:10,591 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.75
[2025-12-13 17:42:54] 2025-12-13 22:42:10,594 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929311557/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:42:54] 2025-12-13 22:42:10,595 | INFO     | extracted standard info from prmon json
[2025-12-13 17:42:54] 2025-12-13 22:42:10,595 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 17:42:54] 2025-12-13 22:42:10,596 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 17:42:54] 2025-12-13 22:42:10,596 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 17:42:54] 2025-12-13 22:42:10,596 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 17:42:54] 2025-12-13 22:42:10,599 | INFO     | fitting pss+swap vs Time
[2025-12-13 17:42:54] 2025-12-13 22:42:10,599 | INFO     | sum of square deviations: 115715658.0
[2025-12-13 17:42:54] 2025-12-13 22:42:10,599 | INFO     | sum of deviations: -6543597429.0
[2025-12-13 17:42:54] 2025-12-13 22:42:10,599 | INFO     | mean x: 1765663400.5
[2025-12-13 17:42:54] 2025-12-13 22:42:10,599 | INFO     | mean y: 2840436.3055555555
[2025-12-13 17:42:54] 2025-12-13 22:42:10,600 | INFO     | intersect: 99849228450.54643
[2025-12-13 17:42:54] 2025-12-13 22:42:10,600 | INFO     | chi2: 0.14812704866550908
[2025-12-13 17:42:54] 2025-12-13 22:42:10,600 | INFO     | current memory leak: -56.55 B/s (using 72 data points, chi2=0.15)
[2025-12-13 17:42:54] 2025-12-13 22:42:10,600 | INFO     | could have reported an average CPU frequency of 2028 MHz (6 samples)
[2025-12-13 17:42:54] 2025-12-13 22:42:10,600 | INFO     | ..............................
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | . Timing measurements:
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | . get job = 0 s
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | . initial setup = 2 s
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | . payload setup = 7 s
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | . stage-in = 0 s
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | . payload execution = 4794 s
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | . stage-out = 0 s
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | . log creation = 0 s
[2025-12-13 17:42:54] 2025-12-13 22:42:10,601 | INFO     | ..............................
[2025-12-13 17:42:54] 2025-12-13 22:42:10,683 | INFO     | 
[2025-12-13 17:42:54] 2025-12-13 22:42:10,683 | INFO     | job summary report
[2025-12-13 17:42:54] 2025-12-13 22:42:10,683 | INFO     | --------------------------------------------------
[2025-12-13 17:42:54] 2025-12-13 22:42:10,683 | INFO     | PanDA job id: 6929311557
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | task id: 47886831
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | errors: (none)
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | pilot state: finished 
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | transexitcode: 0
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | exeerrorcode: 0
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | exeerrordiag: 
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | exitcode: 0
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | exitmsg: OK
[2025-12-13 17:42:54] 2025-12-13 22:42:10,684 | INFO     | cpuconsumptiontime: 51600 s
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | nevents: 400
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | neventsw: 0
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | pid: 12102
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | pgrp: 12102
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | corecount: 12
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | event service: False
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | sizes: {0: 2283990, 5: 2284252, 11: 2284308, 4805: 2310487, 4806: 2319485, 4808: 2319541, 4814: 2319863}
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | --------------------------------------------------
[2025-12-13 17:42:54] 2025-12-13 22:42:10,685 | INFO     | 
[2025-12-13 17:42:54] 2025-12-13 22:42:10,686 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 17:42:54] 2025-12-13 22:42:10,708 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,709 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,709 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,709 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,710 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,710 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,710 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,710 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,710 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,710 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,711 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,711 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,711 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,711 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,711 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,711 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 17:42:54] 2025-12-13 22:42:10,711 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,712 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 17:42:54] 2025-12-13 22:42:10,712 | INFO     | job 6929311557 has completed (purged errors)
[2025-12-13 17:42:54] 2025-12-13 22:42:10,712 | INFO     | overall cleanup function is called
[2025-12-13 17:42:54] 2025-12-13 22:42:11,720 | INFO     | --- collectZombieJob: --- 10, [12102]
[2025-12-13 17:42:54] 2025-12-13 22:42:11,720 | INFO     | zombie collector waiting for pid 12102
[2025-12-13 17:42:54] 2025-12-13 22:42:11,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 17:42:54] 2025-12-13 22:42:11,721 | INFO     | collected zombie processes
[2025-12-13 17:42:54] 2025-12-13 22:42:11,721 | INFO     | will attempt to kill all subprocesses of pid=12102
[2025-12-13 17:42:54] 2025-12-13 22:42:11,811 | INFO     | process IDs to be killed: [12102] (in reverse order)
[2025-12-13 17:42:54] 2025-12-13 22:42:11,861 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 17:42:54] 2025-12-13 22:42:11,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 17:42:54] 2025-12-13 22:42:11,865 | INFO     | did not find any defunct processes belonging to 12102
[2025-12-13 17:42:54] 2025-12-13 22:42:11,869 | INFO     | did not find any defunct processes belonging to 12102
[2025-12-13 17:42:54] 2025-12-13 22:42:11,869 | INFO     | ready for new job
[2025-12-13 17:42:54] 2025-12-13 22:42:11,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 17:42:54] 2025-12-13 22:42:11,871 | INFO     | ***************************************
[2025-12-13 17:42:54] 2025-12-13 22:42:11,871 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 17:42:54] 2025-12-13 22:42:11,871 | INFO     | ***************************************
[2025-12-13 17:42:54] 2025-12-13 22:42:11,871 | INFO     | 
[2025-12-13 17:42:54] 2025-12-13 22:42:11,872 | INFO     | architecture information:
[2025-12-13 17:42:54] 2025-12-13 22:42:11,872 | INFO     | executing command: cat /etc/os-release
[2025-12-13 17:42:54] 2025-12-13 22:42:11,887 | INFO     | cat /etc/os-release:
[2025-12-13 17:42:54] NAME="CentOS Linux"
[2025-12-13 17:42:54] VERSION="7 (Core)"
[2025-12-13 17:42:54] ID="centos"
[2025-12-13 17:42:54] ID_LIKE="rhel fedora"
[2025-12-13 17:42:54] VERSION_ID="7"
[2025-12-13 17:42:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 17:42:54] ANSI_COLOR="0;31"
[2025-12-13 17:42:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 17:42:54] HOME_URL="https://www.centos.org/"
[2025-12-13 17:42:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 17:42:54] 
[2025-12-13 17:42:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 17:42:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 17:42:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 17:42:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 17:42:54] 
[2025-12-13 17:42:54] 2025-12-13 22:42:11,887 | INFO     | ***************************************
[2025-12-13 17:42:54] 2025-12-13 22:42:12,390 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 17:42:54] 2025-12-13 22:42:12,474 | INFO     | sufficient remaining disk space (29444014080 B)
[2025-12-13 17:42:54] 2025-12-13 22:42:12,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 17:42:54] 2025-12-13 22:42:12,474 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 17:42:54] 2025-12-13 22:42:12,475 | INFO     | update_server=False
[2025-12-13 17:42:54] 2025-12-13 22:42:12,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 17:42:54] 2025-12-13 22:42:12,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:42:54] 2025-12-13 22:42:12,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:42:54] 2025-12-13 22:42:12,476 | INFO     | aborting loop
[2025-12-13 17:42:54] 2025-12-13 22:42:12,587 | INFO     | all payload control threads have been joined
[2025-12-13 17:42:54] 2025-12-13 22:42:12,604 | INFO     | all data control threads have been joined
[2025-12-13 17:42:54] 2025-12-13 22:42:12,857 | INFO     | all job control threads have been joined
[2025-12-13 17:42:54] 2025-12-13 22:42:13,476 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:13,479 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:13,480 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:13,578 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:13,592 | INFO     | [payload] control thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:13,607 | INFO     | [data] control thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:13,625 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:13,858 | INFO     | [job] control thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:13,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:42:54] 2025-12-13 22:42:14,117 | INFO     | [job] validate thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:14,374 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:14,380 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:14,403 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:14,720 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:15,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:42:54] 2025-12-13 22:42:15,920 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:19,398 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:22,633 | INFO     | job.realtimelogging is not enabled
[2025-12-13 17:42:54] 2025-12-13 22:42:23,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:42:54] 2025-12-13 22:42:42,282 | INFO     | PID=5692 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 17:42:54] 2025-12-13 22:42:42,283 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:42:54] 2025-12-13 22:42:42,283 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:42:54] 2025-12-13 22:42:42,283 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:42:54] 2025-12-13 22:42:48,669 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:42:54] 2025-12-13 22:42:48,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139677320300352)>', '<ExcThread(monitor, started 139676144883456)>']
[2025-12-13 17:42:54] 2025-12-13 22:42:49,319 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:42:54] 2025-12-13 22:42:49,319 | INFO     | [monitor] control thread has ended
[2025-12-13 17:42:54] 2025-12-13 22:42:53,907 | INFO     | all workflow threads have been joined
[2025-12-13 17:42:54] 2025-12-13 22:42:53,917 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:42:54] 2025-12-13 22:42:53,918 | INFO     | traces error code: 0
[2025-12-13 17:42:54] 2025-12-13 22:42:53,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:42:54] 2025-12-13 22:42:54,018 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:42:54] 2025-12-13 22:42:54,022 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:42:54] 2025-12-13 22:42:54,025 [wrapper] pilotpid: 5692
[2025-12-13 17:42:54] 2025-12-13 22:42:54,029 [wrapper] Pilot exit status: 0
[2025-12-13 17:42:54] 2025-12-13 22:42:54,044 [wrapper] pandaids: 6929311557
[2025-12-13 17:42:54] 2025-12-13 22:42:54,082 [wrapper] cleanup supervisor_pilot  7884 5693
[2025-12-13 17:42:54] 2025-12-13 22:42:54,086 [wrapper] Test setup, not cleaning
[2025-12-13 17:42:54] 2025-12-13 22:42:54,090 [wrapper] apfmon messages muted
[2025-12-13 17:42:54] 2025-12-13 22:42:54,094 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:42:54] 2025-12-13 22:42:54,097 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:42:54]  *** Error codes and diagnostics ***
[2025-12-13 17:42:54]     "exeErrorCode": 0,
[2025-12-13 17:42:54]     "exeErrorDiag": "",
[2025-12-13 17:42:54]     "pilotErrorCode": 0,
[2025-12-13 17:42:54]     "pilotErrorDiag": "",
[2025-12-13 17:42:54]  *** Listing of results directory ***
[2025-12-13 17:42:54] total 347144
[2025-12-13 17:42:54] -rwx------ 1 boincer umatlas     36322 Dec 13 08:48 runpilot2-wrapper.sh
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 08:50 pilot3.tar.gz
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 08:52 queuedata.json
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas       100 Dec 13 16:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:42:54] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 16:21 run_atlas
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas       105 Dec 13 16:21 job.xml
[2025-12-13 17:42:54] -rw-r--r-- 2 boincer umatlas 194624014 Dec 13 16:21 EVNT.47886829._000223.pool.root.1
[2025-12-13 17:42:54] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 16:21 start_atlas.sh
[2025-12-13 17:42:54] drwxrwx--x 2 boincer umatlas      4096 Dec 13 16:21 shared
[2025-12-13 17:42:54] -rw-r--r-- 2 boincer umatlas    592416 Dec 13 16:21 input.tar.gz
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas         0 Dec 13 16:21 boinc_lockfile
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas      2538 Dec 13 16:21 pandaJob.out
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas        57 Dec 13 16:21 setup.sh.local
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas    991736 Dec 13 16:21 agis_schedconf.cvmfs.json
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas   1516240 Dec 13 16:21 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:42:54] drwx------ 5 boincer umatlas      4096 Dec 13 16:21 pilot3
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 17:39 init_data.xml
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas 154772053 Dec 13 17:41 HITS.47886831._005568.pool.root.1
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas        95 Dec 13 17:41 pilot_heartbeat.json
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas       530 Dec 13 17:41 boinc_task_state.xml
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas      1044 Dec 13 17:41 memory_monitor_summary.json
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas    383356 Dec 13 17:42 log.47886831._005568.job.log.tgz.1
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas      7849 Dec 13 17:42 heartbeat.json
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 17:42 boinc_mmap_file
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas        27 Dec 13 17:42 wrapper_checkpoint.txt
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas      4817 Dec 13 17:42 pilotlog.txt
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas    696193 Dec 13 17:42 log.47886831._005568.job.log.1
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas       357 Dec 13 17:42 output.list
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas       620 Dec 13 17:42 runtime_log
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas   1095680 Dec 13 17:42 result.tar.gz
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas       659 Dec 13 17:42 ypvMDmu9eo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuhPKDmnYTtwm.diag
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 17:42 runtime_log.err
[2025-12-13 17:42:54] -rw-r--r-- 1 boincer umatlas     21722 Dec 13 17:42 stderr.txt
[2025-12-13 17:42:54] HITS file was successfully produced:
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas 154772053 Dec 13 17:41 shared/HITS.pool.root.1
[2025-12-13 17:42:54]  *** Contents of shared directory: ***
[2025-12-13 17:42:54] total 342888
[2025-12-13 17:42:54] -rw-r--r-- 2 boincer umatlas 194624014 Dec 13 16:21 ATLAS.root_0
[2025-12-13 17:42:54] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 16:21 start_atlas.sh
[2025-12-13 17:42:54] -rw-r--r-- 2 boincer umatlas    592416 Dec 13 16:21 input.tar.gz
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas 154772053 Dec 13 17:41 HITS.pool.root.1
[2025-12-13 17:42:54] -rw------- 1 boincer umatlas   1095680 Dec 13 17:42 result.tar.gz
17:42:56 (1926): run_atlas exited; CPU time 51582.429993
17:42:56 (1926): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN