Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:54:33 (14412): wrapper (7.7.26015): starting
15:54:33 (14412): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 15:54:33] Arguments: --nthreads 12
[2025-12-13 15:54:33] Threads: 12
[2025-12-13 15:54:33] Checking for CVMFS
[2025-12-13 15:54:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 15:54:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 15:54:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 15:54:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 15:54:34] 2.11.2.0 2914 312668 94076 153972 1 57 14912523 20275200 1 130560 1 138019793 99.963 18284953 14991 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 15:54:34] CVMFS is ok
[2025-12-13 15:54:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 15:54:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 15:54:34] Further information can be found at the LHC@home message board.
[2025-12-13 15:54:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 15:54:34] Checking for apptainer binary...
[2025-12-13 15:54:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 15:54:34] Running /usr/bin/apptainer --version
[2025-12-13 15:54:34] apptainer version 1.3.2-1.el7
[2025-12-13 15:54:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 15:54:35] c-205-5.aglt2.org
[2025-12-13 15:54:35] apptainer works
[2025-12-13 15:54:35] Set ATHENA_PROC_NUMBER=12
[2025-12-13 15:54:35] Set ATHENA_CORE_NUMBER=12
[2025-12-13 15:54:35] Starting ATLAS job with PandaID=6929368339
[2025-12-13 15:54:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:08:04]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:08:04]  mtime=0
[2025-12-13 17:08:04]  protocol_id=None
[2025-12-13 17:08:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 17:08:04]  replicas=None
[2025-12-13 17:08:04]  scope=mc23_13p6TeV
[2025-12-13 17:08:04]  status=None
[2025-12-13 17:08:04]  status_code=0
[2025-12-13 17:08:04]  storage_token=
[2025-12-13 17:08:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929368339/log.47898878._000080.job.log.tgz.1
[2025-12-13 17:08:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/a8/log.47898878._000080.job.log.tgz.1
[2025-12-13 17:08:04]  workdir=None
[2025-12-13 17:08:04] ]
[2025-12-13 17:08:04] 2025-12-13 22:07:07,311 | INFO     | transferring file log.47898878._000080.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929368339/log.47898878._000080.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 17:08:04] 2025-12-13 22:07:07,312 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929368339/log.47898878._000080.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898878._000080.job
[2025-12-13 17:08:04] 2025-12-13 22:07:07,315 | INFO     | monitor loop #324: job 0:6929368339 is in state 'stageout'
[2025-12-13 17:08:04] 2025-12-13 22:07:07,316 | WARNING  | aborting job monitor tasks since payload process 24578 is not running
[2025-12-13 17:08:04] 2025-12-13 22:07:07,326 | INFO     | time since job start (4336s) is within the limit (174528.0s)
[2025-12-13 17:08:04] 2025-12-13 22:07:07,335 | INFO     | adding to output.list: log.47898878._000080.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/a8/log.47898878._000080.job.log.tg
[2025-12-13 17:08:04] 2025-12-13 22:07:07,335 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 17:08:04] 2025-12-13 22:07:07,336 | INFO     | summary of transferred files:
[2025-12-13 17:08:04] 2025-12-13 22:07:07,336 | INFO     |  -- lfn=log.47898878._000080.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 17:08:04] 2025-12-13 22:07:07,336 | INFO     | stage-out finished correctly
[2025-12-13 17:08:04] 2025-12-13 22:07:07,420 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 17:08:04] 2025-12-13 22:07:09,049 | INFO     | job 6929368339 has state=finished
[2025-12-13 17:08:04] 2025-12-13 22:07:09,049 | INFO     | preparing for final server update for job 6929368339 in state='finished'
[2025-12-13 17:08:04] 2025-12-13 22:07:09,050 | INFO     | this job has now completed (state=finished)
[2025-12-13 17:08:04] 2025-12-13 22:07:09,050 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 17:08:04] 2025-12-13 22:07:09,050 | INFO     | log transfer has been attempted: DONE
[2025-12-13 17:08:04] 2025-12-13 22:07:09,050 | INFO     | job 6929368339 has finished - writing final server update
[2025-12-13 17:08:04] 2025-12-13 22:07:09,051 | INFO     | total number of processed events: 400 (read)
[2025-12-13 17:08:04] 2025-12-13 22:07:09,052 | INFO     | executing command: lscpu
[2025-12-13 17:08:04] 2025-12-13 22:07:09,077 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 17:08:04] 2025-12-13 22:07:09,332 | INFO     | time since job start (4338s) is within the limit (174528.0s)
[2025-12-13 17:08:04] 2025-12-13 22:07:09,819 | INFO     | monitor loop #325: job 0:6929368339 is in state 'finished'
[2025-12-13 17:08:04] 2025-12-13 22:07:09,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 17:08:04] 2025-12-13 22:07:11,337 | INFO     | time since job start (4340s) is within the limit (174528.0s)
[2025-12-13 17:08:04] 2025-12-13 22:07:12,322 | INFO     | monitor loop #326: job 0:6929368339 is in state 'finished'
[2025-12-13 17:08:04] 2025-12-13 22:07:12,322 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 17:08:04] 2025-12-13 22:07:13,342 | INFO     | time since job start (4342s) is within the limit (174528.0s)
[2025-12-13 17:08:04] 2025-12-13 22:07:14,001 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 17:08:04] 2025-12-13 22:07:14,004 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-13 17:08:04] 2025-12-13 22:07:14,007 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929368339/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:08:04] 2025-12-13 22:07:14,008 | INFO     | extracted standard info from prmon json
[2025-12-13 17:08:04] 2025-12-13 22:07:14,008 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 17:08:04] 2025-12-13 22:07:14,008 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 17:08:04] 2025-12-13 22:07:14,009 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 17:08:04] 2025-12-13 22:07:14,009 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 17:08:04] 2025-12-13 22:07:14,010 | INFO     | fitting pss+swap vs Time
[2025-12-13 17:08:04] 2025-12-13 22:07:14,011 | INFO     | sum of square deviations: 81266640.0
[2025-12-13 17:08:04] 2025-12-13 22:07:14,011 | INFO     | sum of deviations: -5970418798.0
[2025-12-13 17:08:04] 2025-12-13 22:07:14,011 | INFO     | mean x: 1765661546.5
[2025-12-13 17:08:04] 2025-12-13 22:07:14,011 | INFO     | mean y: 2746851.8125
[2025-12-13 17:08:04] 2025-12-13 22:07:14,011 | INFO     | intersect: 129720659246.48454
[2025-12-13 17:08:04] 2025-12-13 22:07:14,011 | INFO     | chi2: 0.05536011498054397
[2025-12-13 17:08:04] 2025-12-13 22:07:14,012 | INFO     | current memory leak: -73.47 B/s (using 64 data points, chi2=0.06)
[2025-12-13 17:08:04] 2025-12-13 22:07:14,012 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-12-13 17:08:04] 2025-12-13 22:07:14,012 | INFO     | ..............................
[2025-12-13 17:08:04] 2025-12-13 22:07:14,012 | INFO     | . Timing measurements:
[2025-12-13 17:08:04] 2025-12-13 22:07:14,012 | INFO     | . get job = 0 s
[2025-12-13 17:08:04] 2025-12-13 22:07:14,012 | INFO     | . initial setup = 2 s
[2025-12-13 17:08:04] 2025-12-13 22:07:14,012 | INFO     | . payload setup = 7 s
[2025-12-13 17:08:04] 2025-12-13 22:07:14,013 | INFO     | . stage-in = 0 s
[2025-12-13 17:08:04] 2025-12-13 22:07:14,013 | INFO     | . payload execution = 4308 s
[2025-12-13 17:08:04] 2025-12-13 22:07:14,013 | INFO     | . stage-out = 0 s
[2025-12-13 17:08:04] 2025-12-13 22:07:14,013 | INFO     | . log creation = 0 s
[2025-12-13 17:08:04] 2025-12-13 22:07:14,013 | INFO     | ..............................
[2025-12-13 17:08:04] 2025-12-13 22:07:14,094 | INFO     | 
[2025-12-13 17:08:04] 2025-12-13 22:07:14,094 | INFO     | job summary report
[2025-12-13 17:08:04] 2025-12-13 22:07:14,094 | INFO     | --------------------------------------------------
[2025-12-13 17:08:04] 2025-12-13 22:07:14,094 | INFO     | PanDA job id: 6929368339
[2025-12-13 17:08:04] 2025-12-13 22:07:14,094 | INFO     | task id: 47898878
[2025-12-13 17:08:04] 2025-12-13 22:07:14,094 | INFO     | errors: (none)
[2025-12-13 17:08:04] 2025-12-13 22:07:14,095 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 17:08:04] 2025-12-13 22:07:14,095 | INFO     | pilot state: finished 
[2025-12-13 17:08:04] 2025-12-13 22:07:14,095 | INFO     | transexitcode: 0
[2025-12-13 17:08:04] 2025-12-13 22:07:14,095 | INFO     | exeerrorcode: 0
[2025-12-13 17:08:04] 2025-12-13 22:07:14,095 | INFO     | exeerrordiag: 
[2025-12-13 17:08:04] 2025-12-13 22:07:14,095 | INFO     | exitcode: 0
[2025-12-13 17:08:04] 2025-12-13 22:07:14,096 | INFO     | exitmsg: OK
[2025-12-13 17:08:04] 2025-12-13 22:07:14,096 | INFO     | cpuconsumptiontime: 46439 s
[2025-12-13 17:08:04] 2025-12-13 22:07:14,096 | INFO     | nevents: 400
[2025-12-13 17:08:04] 2025-12-13 22:07:14,096 | INFO     | neventsw: 0
[2025-12-13 17:08:04] 2025-12-13 22:07:14,096 | INFO     | pid: 24578
[2025-12-13 17:08:04] 2025-12-13 22:07:14,096 | INFO     | pgrp: 24578
[2025-12-13 17:08:04] 2025-12-13 22:07:14,097 | INFO     | corecount: 12
[2025-12-13 17:08:04] 2025-12-13 22:07:14,097 | INFO     | event service: False
[2025-12-13 17:08:04] 2025-12-13 22:07:14,097 | INFO     | sizes: {0: 2283104, 1: 2283960, 6: 2284222, 12: 2284250, 4319: 2310278, 4320: 2319460, 4326: 2319598}
[2025-12-13 17:08:04] 2025-12-13 22:07:14,097 | INFO     | --------------------------------------------------
[2025-12-13 17:08:04] 2025-12-13 22:07:14,097 | INFO     | 
[2025-12-13 17:08:04] 2025-12-13 22:07:14,097 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 17:08:04] 2025-12-13 22:07:14,123 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,123 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,123 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,123 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,124 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,124 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,124 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,124 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,124 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,124 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,125 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,125 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,125 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,125 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,125 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,126 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,126 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 17:08:04] 2025-12-13 22:07:14,126 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,126 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 17:08:04] 2025-12-13 22:07:14,126 | INFO     | job 6929368339 has completed (purged errors)
[2025-12-13 17:08:04] 2025-12-13 22:07:14,127 | INFO     | overall cleanup function is called
[2025-12-13 17:08:04] 2025-12-13 22:07:15,134 | INFO     | --- collectZombieJob: --- 10, [24578]
[2025-12-13 17:08:04] 2025-12-13 22:07:15,134 | INFO     | zombie collector waiting for pid 24578
[2025-12-13 17:08:04] 2025-12-13 22:07:15,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 17:08:04] 2025-12-13 22:07:15,135 | INFO     | collected zombie processes
[2025-12-13 17:08:04] 2025-12-13 22:07:15,135 | INFO     | will attempt to kill all subprocesses of pid=24578
[2025-12-13 17:08:04] 2025-12-13 22:07:15,226 | INFO     | process IDs to be killed: [24578] (in reverse order)
[2025-12-13 17:08:04] 2025-12-13 22:07:15,280 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 17:08:04] 2025-12-13 22:07:15,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 17:08:04] 2025-12-13 22:07:15,284 | INFO     | did not find any defunct processes belonging to 24578
[2025-12-13 17:08:04] 2025-12-13 22:07:15,287 | INFO     | did not find any defunct processes belonging to 24578
[2025-12-13 17:08:04] 2025-12-13 22:07:15,287 | INFO     | ready for new job
[2025-12-13 17:08:04] 2025-12-13 22:07:15,288 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 17:08:04] 2025-12-13 22:07:15,289 | INFO     | ***************************************
[2025-12-13 17:08:04] 2025-12-13 22:07:15,289 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 17:08:04] 2025-12-13 22:07:15,289 | INFO     | ***************************************
[2025-12-13 17:08:04] 2025-12-13 22:07:15,289 | INFO     | 
[2025-12-13 17:08:04] 2025-12-13 22:07:15,290 | INFO     | architecture information:
[2025-12-13 17:08:04] 2025-12-13 22:07:15,290 | INFO     | executing command: cat /etc/os-release
[2025-12-13 17:08:04] 2025-12-13 22:07:15,307 | INFO     | cat /etc/os-release:
[2025-12-13 17:08:04] NAME="CentOS Linux"
[2025-12-13 17:08:04] VERSION="7 (Core)"
[2025-12-13 17:08:04] ID="centos"
[2025-12-13 17:08:04] ID_LIKE="rhel fedora"
[2025-12-13 17:08:04] VERSION_ID="7"
[2025-12-13 17:08:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 17:08:04] ANSI_COLOR="0;31"
[2025-12-13 17:08:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 17:08:04] HOME_URL="https://www.centos.org/"
[2025-12-13 17:08:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 17:08:04] 
[2025-12-13 17:08:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 17:08:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 17:08:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 17:08:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 17:08:04] 
[2025-12-13 17:08:04] 2025-12-13 22:07:15,307 | INFO     | ***************************************
[2025-12-13 17:08:04] 2025-12-13 22:07:15,810 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 17:08:04] 2025-12-13 22:07:15,827 | INFO     | sufficient remaining disk space (29416751104 B)
[2025-12-13 17:08:04] 2025-12-13 22:07:15,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 17:08:04] 2025-12-13 22:07:15,828 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 17:08:04] 2025-12-13 22:07:15,828 | INFO     | update_server=False
[2025-12-13 17:08:04] 2025-12-13 22:07:15,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 17:08:04] 2025-12-13 22:07:15,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:08:04] 2025-12-13 22:07:15,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:08:04] 2025-12-13 22:07:15,830 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:08:04] 2025-12-13 22:07:15,830 | INFO     | aborting loop
[2025-12-13 17:08:04] 2025-12-13 22:07:16,303 | INFO     | all data control threads have been joined
[2025-12-13 17:08:04] 2025-12-13 22:07:16,705 | INFO     | all payload control threads have been joined
[2025-12-13 17:08:04] 2025-12-13 22:07:16,759 | INFO     | all job control threads have been joined
[2025-12-13 17:08:04] 2025-12-13 22:07:16,832 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:16,834 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:16,834 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:17,138 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:17,212 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:17,308 | INFO     | [data] control thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:17,706 | INFO     | [payload] control thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:17,766 | INFO     | [job] control thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:17,835 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:17,857 | INFO     | [job] validate thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:18,001 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:18,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:08:04] 2025-12-13 22:07:18,088 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:18,095 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:18,096 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:18,110 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:22,017 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:08:04] 2025-12-13 22:07:46,551 | INFO     | PID=18087 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 17:08:04] 2025-12-13 22:07:46,551 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:08:04] 2025-12-13 22:07:46,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:08:04] 2025-12-13 22:07:46,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:08:04] 2025-12-13 22:07:57,706 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:08:04] 2025-12-13 22:07:59,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995250489152)>', '<ExcThread(monitor, started 139994475763456)>']
[2025-12-13 17:08:04] 2025-12-13 22:07:59,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:08:04] 2025-12-13 22:07:59,614 | INFO     | [monitor] control thread has ended
[2025-12-13 17:08:04] 2025-12-13 22:08:04,083 | INFO     | all workflow threads have been joined
[2025-12-13 17:08:04] 2025-12-13 22:08:04,083 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:08:04] 2025-12-13 22:08:04,084 | INFO     | traces error code: 0
[2025-12-13 17:08:04] 2025-12-13 22:08:04,084 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:08:04] 2025-12-13 22:08:04,189 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:08:04] 2025-12-13 22:08:04,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:08:04] 2025-12-13 22:08:04,196 [wrapper] pilotpid: 18087
[2025-12-13 17:08:04] 2025-12-13 22:08:04,200 [wrapper] Pilot exit status: 0
[2025-12-13 17:08:04] 2025-12-13 22:08:04,216 [wrapper] pandaids: 6929368339
[2025-12-13 17:08:04] 2025-12-13 22:08:04,265 [wrapper] cleanup supervisor_pilot 14917 18088
[2025-12-13 17:08:04] 2025-12-13 22:08:04,268 [wrapper] Test setup, not cleaning
[2025-12-13 17:08:04] 2025-12-13 22:08:04,272 [wrapper] apfmon messages muted
[2025-12-13 17:08:04] 2025-12-13 22:08:04,277 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:08:04] 2025-12-13 22:08:04,281 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:08:04]  *** Error codes and diagnostics ***
[2025-12-13 17:08:04]     "exeErrorCode": 0,
[2025-12-13 17:08:04]     "exeErrorDiag": "",
[2025-12-13 17:08:04]     "pilotErrorCode": 0,
[2025-12-13 17:08:04]     "pilotErrorDiag": "",
[2025-12-13 17:08:04]  *** Listing of results directory ***
[2025-12-13 17:08:04] total 374100
[2025-12-13 17:08:04] -rwx------ 1 boincer umatlas     36322 Dec 13 08:47 runpilot2-wrapper.sh
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 08:50 pilot3.tar.gz
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 08:50 queuedata.json
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas       100 Dec 13 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:08:04] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 15:54 run_atlas
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas       105 Dec 13 15:54 job.xml
[2025-12-13 17:08:04] -rw-r--r-- 2 boincer umatlas 194371499 Dec 13 15:54 EVNT.47898875._000004.pool.root.1
[2025-12-13 17:08:04] -rw-r--r-- 2 boincer umatlas    592384 Dec 13 15:54 input.tar.gz
[2025-12-13 17:08:04] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 15:54 start_atlas.sh
[2025-12-13 17:08:04] drwxrwx--x 2 boincer umatlas      4096 Dec 13 15:54 shared
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas         0 Dec 13 15:54 boinc_lockfile
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas      2494 Dec 13 15:54 pandaJob.out
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas        57 Dec 13 15:54 setup.sh.local
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas    991736 Dec 13 15:54 agis_schedconf.cvmfs.json
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas   1516240 Dec 13 15:54 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:08:04] drwx------ 5 boincer umatlas      4096 Dec 13 15:54 pilot3
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas      5953 Dec 13 17:02 init_data.xml
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas 182785116 Dec 13 17:06 HITS.47898878._000080.pool.root.1
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas        95 Dec 13 17:06 pilot_heartbeat.json
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas      1044 Dec 13 17:07 memory_monitor_summary.json
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas    369639 Dec 13 17:07 log.47898878._000080.job.log.tgz.1
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas      7838 Dec 13 17:07 heartbeat.json
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas       529 Dec 13 17:07 boinc_task_state.xml
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 17:08 boinc_mmap_file
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas        27 Dec 13 17:08 wrapper_checkpoint.txt
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas      4746 Dec 13 17:08 pilotlog.txt
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas    633172 Dec 13 17:08 log.47898878._000080.job.log.1
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas       357 Dec 13 17:08 output.list
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas       620 Dec 13 17:08 runtime_log
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas   1024000 Dec 13 17:08 result.tar.gz
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 17:08 runtime_log.err
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas       658 Dec 13 17:08 lcBLDmI9eo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlkTKDmuNXvon.diag
[2025-12-13 17:08:04] -rw-r--r-- 1 boincer umatlas     21730 Dec 13 17:08 stderr.txt
[2025-12-13 17:08:04] HITS file was successfully produced:
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas 182785116 Dec 13 17:06 shared/HITS.pool.root.1
[2025-12-13 17:08:04]  *** Contents of shared directory: ***
[2025-12-13 17:08:04] total 369916
[2025-12-13 17:08:04] -rw-r--r-- 2 boincer umatlas 194371499 Dec 13 15:54 ATLAS.root_0
[2025-12-13 17:08:04] -rw-r--r-- 2 boincer umatlas    592384 Dec 13 15:54 input.tar.gz
[2025-12-13 17:08:04] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 15:54 start_atlas.sh
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas 182785116 Dec 13 17:06 HITS.pool.root.1
[2025-12-13 17:08:04] -rw------- 1 boincer umatlas   1024000 Dec 13 17:08 result.tar.gz
17:08:05 (14412): run_atlas exited; CPU time 46420.337592
17:08:05 (14412): called boinc_finish(0)

</stderr_txt>
]]>

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