Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:31:09 (1059240): wrapper (7.7.26015): starting
22:31:09 (1059240): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 22:31:09] Arguments: --nthreads 4
[2025-12-14 22:31:09] Threads: 4
[2025-12-14 22:31:09] Checking for CVMFS
[2025-12-14 22:31:09] No cvmfs_config command found, will try listing directly
[2025-12-14 22:31:09] CVMFS is ok
[2025-12-14 22:31:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 22:31:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 22:31:09] Further information can be found at the LHC@home message board.
[2025-12-14 22:31:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 22:31:09] Checking for apptainer binary...
[2025-12-14 22:31:09] which: no apptainer in ((null))
[2025-12-14 22:31:09] apptainer is not installed, using version from CVMFS
[2025-12-14 22:31:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 22:31:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2025-12-14 22:31:10] apptainer works
[2025-12-14 22:31:10] Set ATHENA_PROC_NUMBER=4
[2025-12-14 22:31:10] Set ATHENA_CORE_NUMBER=4
[2025-12-14 22:31:10] Starting ATLAS job with PandaID=6929312868
[2025-12-14 22:31:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-15 03:09:06]  *** The last 200 lines of the pilot log: ***
[2025-12-15 03:09:06] 2025-12-15 01:57:43,868 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6929312868/memory_monitor_summary.json (trf name=prmon)
[2025-12-15 03:09:06] 2025-12-15 01:57:43,870 | INFO     | extracted standard info from prmon json
[2025-12-15 03:09:06] 2025-12-15 01:57:43,870 | INFO     | extracted standard memory fields from prmon json
[2025-12-15 03:09:06] 2025-12-15 01:57:43,870 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-15 03:09:06] 2025-12-15 01:57:43,871 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-15 03:09:06] 2025-12-15 01:57:43,871 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-15 03:09:06] 2025-12-15 01:57:43,878 | INFO     | fitting pss+swap vs Time
[2025-12-15 03:09:06] 2025-12-15 01:57:43,879 | INFO     | sum of square deviations: 5576683165.5
[2025-12-15 03:09:06] 2025-12-15 01:57:43,883 | INFO     | sum of deviations: -85238346950.00002
[2025-12-15 03:09:06] 2025-12-15 01:57:43,883 | INFO     | mean x: 1765755869.5
[2025-12-15 03:09:06] 2025-12-15 01:57:43,883 | INFO     | mean y: 2365752.007633588
[2025-12-15 03:09:06] 2025-12-15 01:57:43,883 | INFO     | intersect: 26991546769.958714
[2025-12-15 03:09:06] 2025-12-15 01:57:43,884 | INFO     | chi2: 2.4541219164334054
[2025-12-15 03:09:06] 2025-12-15 01:57:43,885 | INFO     | sum of square deviations: 5263458688.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,888 | INFO     | sum of deviations: -68188817547.99999
[2025-12-15 03:09:06] 2025-12-15 01:57:43,888 | INFO     | mean x: 1765755717.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,888 | INFO     | mean y: 2373939.6303501944
[2025-12-15 03:09:06] 2025-12-15 01:57:43,889 | INFO     | intersect: 22877977522.376835
[2025-12-15 03:09:06] 2025-12-15 01:57:43,889 | INFO     | chi2: 1.7838282491269928
[2025-12-15 03:09:06] 2025-12-15 01:57:43,889 | INFO     | current chi2=1.7838282491269928 (change=27.312973443493615 %)
[2025-12-15 03:09:06] 2025-12-15 01:57:43,890 | INFO     | sum of square deviations: 4962187923.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,893 | INFO     | sum of deviations: -66454415101.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,893 | INFO     | mean x: 1765755564.5
[2025-12-15 03:09:06] 2025-12-15 01:57:43,893 | INFO     | mean y: 2374817.6746031744
[2025-12-15 03:09:06] 2025-12-15 01:57:43,894 | INFO     | intersect: 23649656031.329594
[2025-12-15 03:09:06] 2025-12-15 01:57:43,894 | INFO     | chi2: 1.7781458114596622
[2025-12-15 03:09:06] 2025-12-15 01:57:43,894 | INFO     | current chi2=1.7781458114596622 (change=0.31855295879026213 %)
[2025-12-15 03:09:06] 2025-12-15 01:57:43,895 | INFO     | right removable region: 251
[2025-12-15 03:09:06] 2025-12-15 01:57:43,895 | INFO     | sum of square deviations: 5263458688.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,898 | INFO     | sum of deviations: -112901670659.99997
[2025-12-15 03:09:06] 2025-12-15 01:57:43,899 | INFO     | mean x: 1765756022.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,899 | INFO     | mean y: 2379040.9844357977
[2025-12-15 03:09:06] 2025-12-15 01:57:43,899 | INFO     | intersect: 37878007345.28997
[2025-12-15 03:09:06] 2025-12-15 01:57:43,900 | INFO     | chi2: 1.1956710133405406
[2025-12-15 03:09:06] 2025-12-15 01:57:43,900 | INFO     | current chi2=1.1956710133405406 (change=51.27907031292811 %)
[2025-12-15 03:09:06] 2025-12-15 01:57:43,901 | INFO     | sum of square deviations: 4962187923.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,903 | INFO     | sum of deviations: -101720850058.99997
[2025-12-15 03:09:06] 2025-12-15 01:57:43,904 | INFO     | time since job start (15981s) is within the limit (174528.0s)
[2025-12-15 03:09:06] 2025-12-15 01:57:43,904 | INFO     | mean x: 1765756174.5
[2025-12-15 03:09:06] 2025-12-15 01:57:43,905 | INFO     | mean y: 2373370.214285714
[2025-12-15 03:09:06] 2025-12-15 01:57:43,905 | INFO     | intersect: 36198950737.73933
[2025-12-15 03:09:06] 2025-12-15 01:57:43,906 | INFO     | chi2: 1.1791210262344651
[2025-12-15 03:09:06] 2025-12-15 01:57:43,906 | INFO     | current chi2=1.1791210262344651 (change=1.3841589301255266 %)
[2025-12-15 03:09:06] 2025-12-15 01:57:43,906 | INFO     | left removable region: 20
[2025-12-15 03:09:06] 2025-12-15 01:57:43,907 | INFO     | sum of square deviations: 3822136780.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,909 | INFO     | sum of deviations: -57220140307.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,909 | INFO     | mean x: 1765756144.0
[2025-12-15 03:09:06] 2025-12-15 01:57:43,909 | INFO     | mean y: 2368358.8701298703
[2025-12-15 03:09:06] 2025-12-15 01:57:43,910 | INFO     | intersect: 26437009535.585762
[2025-12-15 03:09:06] 2025-12-15 01:57:43,910 | INFO     | chi2: 0.40510123032598466
[2025-12-15 03:09:06] 2025-12-15 01:57:43,911 | INFO     | current memory leak: -14.97 B/s (using 231 data points, chi2=0.41)
[2025-12-15 03:09:06] 2025-12-15 01:57:43,911 | INFO     | could have reported an average CPU frequency of 2434 MHz (12 samples)
[2025-12-15 03:09:06] 2025-12-15 01:57:43,912 | INFO     | ..............................
[2025-12-15 03:09:06] 2025-12-15 01:57:43,912 | INFO     | . Timing measurements:
[2025-12-15 03:09:06] 2025-12-15 01:57:43,912 | INFO     | . get job = 0 s
[2025-12-15 03:09:06] 2025-12-15 01:57:43,912 | INFO     | . initial setup = 1 s
[2025-12-15 03:09:06] 2025-12-15 01:57:43,913 | INFO     | . payload setup = 5 s
[2025-12-15 03:09:06] 2025-12-15 01:57:43,913 | INFO     | . stage-in = 0 s
[2025-12-15 03:09:06] 2025-12-15 01:57:43,913 | INFO     | . payload execution = 15947 s
[2025-12-15 03:09:06] 2025-12-15 01:57:43,913 | INFO     | . stage-out = 1 s
[2025-12-15 03:09:06] 2025-12-15 01:57:43,913 | INFO     | . log creation = 0 s
[2025-12-15 03:09:06] 2025-12-15 01:57:43,913 | INFO     | ..............................
[2025-12-15 03:09:06] 2025-12-15 01:57:44,047 | INFO     | 
[2025-12-15 03:09:06] 2025-12-15 01:57:44,047 | INFO     | job summary report
[2025-12-15 03:09:06] 2025-12-15 01:57:44,047 | INFO     | --------------------------------------------------
[2025-12-15 03:09:06] 2025-12-15 01:57:44,048 | INFO     | PanDA job id: 6929312868
[2025-12-15 03:09:06] 2025-12-15 01:57:44,048 | INFO     | task id: 47886831
[2025-12-15 03:09:06] 2025-12-15 01:57:44,048 | INFO     | errors: (none)
[2025-12-15 03:09:06] 2025-12-15 01:57:44,048 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-15 03:09:06] 2025-12-15 01:57:44,048 | INFO     | pilot state: finished 
[2025-12-15 03:09:06] 2025-12-15 01:57:44,048 | INFO     | transexitcode: 0
[2025-12-15 03:09:06] 2025-12-15 01:57:44,048 | INFO     | exeerrorcode: 0
[2025-12-15 03:09:06] 2025-12-15 01:57:44,048 | INFO     | exeerrordiag: 
[2025-12-15 03:09:06] 2025-12-15 01:57:44,049 | INFO     | exitcode: 0
[2025-12-15 03:09:06] 2025-12-15 01:57:44,049 | INFO     | exitmsg: OK
[2025-12-15 03:09:06] 2025-12-15 01:57:44,049 | INFO     | cpuconsumptiontime: 61029 s
[2025-12-15 03:09:06] 2025-12-15 01:57:44,049 | INFO     | nevents: 400
[2025-12-15 03:09:06] 2025-12-15 01:57:44,049 | INFO     | neventsw: 0
[2025-12-15 03:09:06] 2025-12-15 01:57:44,049 | INFO     | pid: 1069978
[2025-12-15 03:09:06] 2025-12-15 01:57:44,049 | INFO     | pgrp: 1069978
[2025-12-15 03:09:06] 2025-12-15 01:57:44,049 | INFO     | corecount: 4
[2025-12-15 03:09:06] 2025-12-15 01:57:44,050 | INFO     | event service: False
[2025-12-15 03:09:06] 2025-12-15 01:57:44,050 | INFO     | sizes: {0: 2283829, 1: 2284028, 5: 2284290, 11: 2284346, 15957: 2315704, 15958: 2324724, 15959: 2324908, 15966: 2325102}
[2025-12-15 03:09:06] 2025-12-15 01:57:44,050 | INFO     | --------------------------------------------------
[2025-12-15 03:09:06] 2025-12-15 01:57:44,050 | INFO     | 
[2025-12-15 03:09:06] 2025-12-15 01:57:44,050 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-12-15 03:09:06] 2025-12-15 01:57:44,073 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,073 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,073 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,074 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,074 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,074 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-15 03:09:06] 2025-12-15 01:57:44,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-15 03:09:06] 2025-12-15 01:57:44,076 | INFO     | job 6929312868 has completed (purged errors)
[2025-12-15 03:09:06] 2025-12-15 01:57:44,077 | INFO     | overall cleanup function is called
[2025-12-15 03:09:06] 2025-12-15 01:57:45,085 | INFO     | --- collectZombieJob: --- 10, [1069978]
[2025-12-15 03:09:06] 2025-12-15 01:57:45,086 | INFO     | zombie collector waiting for pid 1069978
[2025-12-15 03:09:06] 2025-12-15 01:57:45,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-15 03:09:06] 2025-12-15 01:57:45,086 | INFO     | collected zombie processes
[2025-12-15 03:09:06] 2025-12-15 01:57:45,086 | INFO     | will attempt to kill all subprocesses of pid=1069978
[2025-12-15 03:09:06] 2025-12-15 01:57:45,723 | INFO     | PID=1063224 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-15 03:09:06] 2025-12-15 01:57:45,723 | INFO     | .. there are 3 such processes running
[2025-12-15 03:09:06] 2025-12-15 01:57:45,799 | INFO     | process IDs to be killed: [1069978] (in reverse order)
[2025-12-15 03:09:06] 2025-12-15 01:57:45,888 | WARNING  | found no corresponding commands to process id(s)
[2025-12-15 03:09:06] 2025-12-15 01:57:45,889 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-15 03:09:06] 2025-12-15 01:57:45,898 | INFO     | did not find any defunct processes belonging to 1069978
[2025-12-15 03:09:06] 2025-12-15 01:57:45,907 | INFO     | did not find any defunct processes belonging to 1069978
[2025-12-15 03:09:06] 2025-12-15 01:57:45,907 | INFO     | ready for new job
[2025-12-15 03:09:06] 2025-12-15 01:57:45,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-15 03:09:06] 2025-12-15 01:57:45,910 | INFO     | ***************************************
[2025-12-15 03:09:06] 2025-12-15 01:57:45,910 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-15 03:09:06] 2025-12-15 01:57:45,910 | INFO     | ***************************************
[2025-12-15 03:09:06] 2025-12-15 01:57:45,910 | INFO     | 
[2025-12-15 03:09:06] 2025-12-15 01:57:45,913 | INFO     | architecture information:
[2025-12-15 03:09:06] 2025-12-15 01:57:45,913 | INFO     | executing command: cat /etc/os-release
[2025-12-15 03:09:06] 2025-12-15 01:57:45,931 | INFO     | cat /etc/os-release:
[2025-12-15 03:09:06] NAME="CentOS Linux"
[2025-12-15 03:09:06] VERSION="7 (Core)"
[2025-12-15 03:09:06] ID="centos"
[2025-12-15 03:09:06] ID_LIKE="rhel fedora"
[2025-12-15 03:09:06] VERSION_ID="7"
[2025-12-15 03:09:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-15 03:09:06] ANSI_COLOR="0;31"
[2025-12-15 03:09:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-15 03:09:06] HOME_URL="https://www.centos.org/"
[2025-12-15 03:09:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-15 03:09:06] 
[2025-12-15 03:09:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-15 03:09:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-15 03:09:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-15 03:09:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-15 03:09:06] 
[2025-12-15 03:09:06] 2025-12-15 01:57:45,931 | INFO     | ***************************************
[2025-12-15 03:09:06] 2025-12-15 01:57:46,434 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-12-15 03:09:06] 2025-12-15 01:57:46,452 | INFO     | sufficient remaining disk space (1668648271872 B)
[2025-12-15 03:09:06] 2025-12-15 01:57:46,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-15 03:09:06] 2025-12-15 01:57:46,452 | INFO     | current server update state: UPDATING_FINAL
[2025-12-15 03:09:06] 2025-12-15 01:57:46,453 | INFO     | update_server=False
[2025-12-15 03:09:06] 2025-12-15 01:57:46,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-15 03:09:06] 2025-12-15 01:57:46,453 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-15 03:09:06] 2025-12-15 01:57:46,453 | INFO     | found 0 job(s) in 20 queues
[2025-12-15 03:09:06] 2025-12-15 01:57:46,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-15 03:09:06] 2025-12-15 01:57:46,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-15 03:09:06] 2025-12-15 01:57:46,601 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-15 03:09:06] 2025-12-15 01:57:46,640 | INFO     | all payload control threads have been joined
[2025-12-15 03:09:06] 2025-12-15 01:57:46,719 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-15 03:09:06] 2025-12-15 01:57:46,720 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-15 03:09:06] 2025-12-15 01:57:46,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-15 03:09:06] 2025-12-15 01:57:46,720 | INFO     | will abort loop
[2025-12-15 03:09:06] 2025-12-15 01:57:46,932 | INFO     | all data control threads have been joined
[2025-12-15 03:09:06] 2025-12-15 01:57:47,186 | INFO     | all job control threads have been joined
[2025-12-15 03:09:06] 2025-12-15 01:57:47,434 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-15 03:09:06] 2025-12-15 01:57:47,458 | INFO     | [job] retrieve thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:47,646 | INFO     | [payload] control thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:47,686 | INFO     | [payload] validate_pre thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:47,719 | INFO     | [payload] execute_payloads thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:47,725 | INFO     | [job] job monitor thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:47,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:47,937 | INFO     | [data] control thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:48,188 | INFO     | [job] control thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:48,550 | INFO     | [job] create_data_payload thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:48,606 | INFO     | [data] copytool_out thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:48,632 | INFO     | [payload] validate_post thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:48,703 | INFO     | [monitor] cgroup control has ended
[2025-12-15 03:09:06] 2025-12-15 01:57:48,728 | INFO     | [job] validate thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:48,846 | INFO     | [data] copytool_in thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:49,006 | INFO     | [payload] failed_post thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:49,057 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-15 03:09:06] 2025-12-15 01:57:50,062 | INFO     | [job] queue monitor thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:51,438 | INFO     | [data] queue_monitor thread has finished
[2025-12-15 03:09:06] 2025-12-15 01:57:52,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23052303435584)>', '<ExcThread(monitor, started 23052062516992)>']
[2025-12-15 03:09:06] 2025-12-15 01:57:52,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-15 03:09:06] 2025-12-15 01:57:52,475 | INFO     | [monitor] control thread has ended
[2025-12-15 03:09:06] 2025-12-15 01:57:57,090 | INFO     | all workflow threads have been joined
[2025-12-15 03:09:06] 2025-12-15 01:57:57,091 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-15 03:09:06] 2025-12-15 01:57:57,091 | INFO     | traces error code: 0
[2025-12-15 03:09:06] 2025-12-15 01:57:57,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-15 03:09:06] 2025-12-15 01:57:57,208 [wrapper] ==== pilot stdout END ====
[2025-12-15 03:09:06] 2025-12-15 01:57:57,210 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-15 03:09:06] 2025-12-15 01:57:57,213 [wrapper] pilotpid: 1063224
[2025-12-15 03:09:06] 2025-12-15 01:57:57,216 [wrapper] Pilot exit status: 0
[2025-12-15 03:09:06] 2025-12-15 01:57:57,226 [wrapper] pandaids: 6929312868
[2025-12-15 03:09:06] 2025-12-15 01:57:57,284 [wrapper] cleanup supervisor_pilot 1267600 1063225
[2025-12-15 03:09:06] 2025-12-15 01:57:57,287 [wrapper] Test setup, not cleaning
[2025-12-15 03:09:06] 2025-12-15 01:57:57,290 [wrapper] apfmon messages muted
[2025-12-15 03:09:06] 2025-12-15 01:57:57,293 [wrapper] ==== wrapper stdout END ====
[2025-12-15 03:09:06] 2025-12-15 01:57:57,296 [wrapper] ==== wrapper stderr END ====
[2025-12-15 03:09:06]  *** Error codes and diagnostics ***
[2025-12-15 03:09:06]     "exeErrorCode": 0,
[2025-12-15 03:09:06]     "exeErrorDiag": "",
[2025-12-15 03:09:06]     "pilotErrorCode": 0,
[2025-12-15 03:09:06]     "pilotErrorDiag": "",
[2025-12-15 03:09:06]  *** Listing of results directory ***
[2025-12-15 03:09:06] total 343804
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc    579449 Dec 13 14:45 pilot3.tar.gz
[2025-12-15 03:09:06] -rwx------ 1 boinc boinc     36322 Dec 13 14:46 runpilot2-wrapper.sh
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc      5112 Dec 13 14:47 queuedata.json
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc       100 Dec 14 22:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-15 03:09:06] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 22:31 run_atlas
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc       105 Dec 14 22:31 job.xml
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc      6424 Dec 14 22:31 init_data.xml
[2025-12-15 03:09:06] -rw-r--r-- 2 boinc boinc 191651067 Dec 14 22:31 EVNT.47886829._000228.pool.root.1
[2025-12-15 03:09:06] -rw-r--r-- 2 boinc boinc     15847 Dec 14 22:31 start_atlas.sh
[2025-12-15 03:09:06] drwxrwx--x 2 boinc boinc      4096 Dec 14 22:31 shared
[2025-12-15 03:09:06] -rw-r--r-- 2 boinc boinc    592410 Dec 14 22:31 input.tar.gz
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc         0 Dec 14 22:31 boinc_lockfile
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc      2537 Dec 14 22:31 pandaJob.out
[2025-12-15 03:09:06] -rw------- 1 boinc boinc    991024 Dec 14 22:31 agis_schedconf.cvmfs.json
[2025-12-15 03:09:06] drwx------ 5 boinc boinc      4096 Dec 14 22:31 pilot3
[2025-12-15 03:09:06] -rw------- 1 boinc boinc 151134660 Dec 15 02:57 HITS.47886831._005697.pool.root.1
[2025-12-15 03:09:06] -rw------- 1 boinc boinc        95 Dec 15 02:57 pilot_heartbeat.json
[2025-12-15 03:09:06] -rw------- 1 boinc boinc      1036 Dec 15 02:57 memory_monitor_summary.json
[2025-12-15 03:09:06] -rw------- 1 boinc boinc   1516240 Dec 15 02:57 agis_ddmendpoints.agis.ALL.json
[2025-12-15 03:09:06] -rw------- 1 boinc boinc    429386 Dec 15 02:57 log.47886831._005697.job.log.tgz.1
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc       529 Dec 15 02:57 boinc_task_state.xml
[2025-12-15 03:09:06] -rw------- 1 boinc boinc      7828 Dec 15 02:57 heartbeat.json
[2025-12-15 03:09:06] -rw------- 1 boinc boinc      4749 Dec 15 02:57 pilotlog.txt
[2025-12-15 03:09:06] -rw------- 1 boinc boinc   2249298 Dec 15 02:57 log.47886831._005697.job.log.1
[2025-12-15 03:09:06] -rw------- 1 boinc boinc       357 Dec 15 02:57 output.list
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc       620 Dec 15 02:57 runtime_log
[2025-12-15 03:09:06] -rw------- 1 boinc boinc   2693120 Dec 15 02:57 result.tar.gz
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc      9206 Dec 15 02:57 runtime_log.err
[2025-12-15 03:09:06] -rw------- 1 boinc boinc       666 Dec 15 02:57 WN5LDmt7eo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnfTKDmsk0Psn.diag
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc        26 Dec 15 03:08 wrapper_checkpoint.txt
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc      8192 Dec 15 03:09 boinc_mmap_file
[2025-12-15 03:09:06] -rw-r--r-- 1 boinc boinc     20921 Dec 15 03:09 stderr.txt
[2025-12-15 03:09:06] HITS file was successfully produced:
[2025-12-15 03:09:06] -rw------- 1 boinc boinc 151134660 Dec 15 02:57 shared/HITS.pool.root.1
[2025-12-15 03:09:06]  *** Contents of shared directory: ***
[2025-12-15 03:09:06] total 337992
[2025-12-15 03:09:06] -rw-r--r-- 2 boinc boinc 191651067 Dec 14 22:31 ATLAS.root_0
[2025-12-15 03:09:06] -rw-r--r-- 2 boinc boinc     15847 Dec 14 22:31 start_atlas.sh
[2025-12-15 03:09:06] -rw-r--r-- 2 boinc boinc    592410 Dec 14 22:31 input.tar.gz
[2025-12-15 03:09:06] -rw------- 1 boinc boinc 151134660 Dec 15 02:57 HITS.pool.root.1
[2025-12-15 03:09:06] -rw------- 1 boinc boinc   2693120 Dec 15 02:57 result.tar.gz
03:09:08 (1059240): run_atlas exited; CPU time 61658.916710
03:09:08 (1059240): called boinc_finish(0)

</stderr_txt>
]]>

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