Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:36:54 (808): wrapper (7.7.26015): starting
15:36:54 (808): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 15:36:54] Arguments: --nthreads 12
[2025-12-13 15:36:54] Threads: 12
[2025-12-13 15:36:54] Checking for CVMFS
[2025-12-13 15:36:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 15:36:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 15:36:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 15:36:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 15:36:54] 2.11.2.0 3103 102626 101288 153972 2 57 15723191 20275201 1 130560 0 44358771 99.928 5401368 32986 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 15:36:54] CVMFS is ok
[2025-12-13 15:36:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 15:36:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 15:36:54] Further information can be found at the LHC@home message board.
[2025-12-13 15:36:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 15:36:54] Checking for apptainer binary...
[2025-12-13 15:36:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 15:36:54] Running /usr/bin/apptainer --version
[2025-12-13 15:36:54] apptainer version 1.3.2-1.el7
[2025-12-13 15:36:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 15:36:55] c-115-41.aglt2.org
[2025-12-13 15:36:55] apptainer works
[2025-12-13 15:36:55] Set ATHENA_PROC_NUMBER=12
[2025-12-13 15:36:55] Set ATHENA_CORE_NUMBER=12
[2025-12-13 15:36:55] Starting ATLAS job with PandaID=6929275855
[2025-12-13 15:36:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:06:41]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:06:41]  lfn=log.47898836._001003.job.log.tgz.1
[2025-12-13 17:06:41]  mtime=0
[2025-12-13 17:06:41]  protocol_id=None
[2025-12-13 17:06:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 17:06:41]  replicas=None
[2025-12-13 17:06:41]  scope=mc23_13p6TeV
[2025-12-13 17:06:41]  status=None
[2025-12-13 17:06:41]  status_code=0
[2025-12-13 17:06:41]  storage_token=
[2025-12-13 17:06:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929275855/log.47898836._001003.job.log.tgz.1
[2025-12-13 17:06:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/b1/log.47898836._001003.job.log.tgz.1
[2025-12-13 17:06:41]  workdir=None
[2025-12-13 17:06:41] ]
[2025-12-13 17:06:41] 2025-12-13 22:06:03,922 | INFO     | transferring file log.47898836._001003.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929275855/log.47898836._001003.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 17:06:41] 2025-12-13 22:06:03,922 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929275855/log.47898836._001003.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898836._001003.job
[2025-12-13 17:06:41] 2025-12-13 22:06:03,945 | INFO     | adding to output.list: log.47898836._001003.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/b1/log.47898836._001003.job.log.tg
[2025-12-13 17:06:41] 2025-12-13 22:06:03,946 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 17:06:41] 2025-12-13 22:06:03,946 | INFO     | summary of transferred files:
[2025-12-13 17:06:41] 2025-12-13 22:06:03,946 | INFO     |  -- lfn=log.47898836._001003.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 17:06:41] 2025-12-13 22:06:03,946 | INFO     | stage-out finished correctly
[2025-12-13 17:06:41] 2025-12-13 22:06:04,023 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 17:06:41] 2025-12-13 22:06:04,042 | INFO     | time since job start (5334s) is within the limit (174528.0s)
[2025-12-13 17:06:41] 2025-12-13 22:06:04,096 | INFO     | job 6929275855 has state=finished
[2025-12-13 17:06:41] 2025-12-13 22:06:04,096 | INFO     | preparing for final server update for job 6929275855 in state='finished'
[2025-12-13 17:06:41] 2025-12-13 22:06:04,096 | INFO     | this job has now completed (state=finished)
[2025-12-13 17:06:41] 2025-12-13 22:06:04,097 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 17:06:41] 2025-12-13 22:06:04,097 | INFO     | log transfer has been attempted: DONE
[2025-12-13 17:06:41] 2025-12-13 22:06:04,097 | INFO     | job 6929275855 has finished - writing final server update
[2025-12-13 17:06:41] 2025-12-13 22:06:04,097 | INFO     | total number of processed events: 400 (read)
[2025-12-13 17:06:41] 2025-12-13 22:06:04,098 | INFO     | executing command: lscpu
[2025-12-13 17:06:41] 2025-12-13 22:06:04,124 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 17:06:41] 2025-12-13 22:06:06,047 | INFO     | time since job start (5336s) is within the limit (174528.0s)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,053 | INFO     | time since job start (5338s) is within the limit (174528.0s)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,099 | WARNING  | process 11995 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 17:06:41] 2025-12-13 22:06:08,099 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929275855/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,199 | INFO     | number of running child processes to parent process 11995: 1
[2025-12-13 17:06:41] 2025-12-13 22:06:08,199 | INFO     | maximum number of monitored processes: 6
[2025-12-13 17:06:41] 2025-12-13 22:06:08,769 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 17:06:41] 2025-12-13 22:06:08,774 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-13 17:06:41] 2025-12-13 22:06:08,777 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929275855/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,777 | INFO     | extracted standard info from prmon json
[2025-12-13 17:06:41] 2025-12-13 22:06:08,778 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 17:06:41] 2025-12-13 22:06:08,778 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 17:06:41] 2025-12-13 22:06:08,778 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 17:06:41] 2025-12-13 22:06:08,779 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 17:06:41] 2025-12-13 22:06:08,780 | INFO     | fitting pss+swap vs Time
[2025-12-13 17:06:41] 2025-12-13 22:06:08,781 | INFO     | sum of square deviations: 158737860.0
[2025-12-13 17:06:41] 2025-12-13 22:06:08,781 | INFO     | sum of deviations: -12153156880.0
[2025-12-13 17:06:41] 2025-12-13 22:06:08,781 | INFO     | mean x: 1765660973.5
[2025-12-13 17:06:41] 2025-12-13 22:06:08,781 | INFO     | mean y: 2802702.2
[2025-12-13 17:06:41] 2025-12-13 22:06:08,781 | INFO     | intersect: 135183879276.11264
[2025-12-13 17:06:41] 2025-12-13 22:06:08,782 | INFO     | chi2: 0.06123240878930912
[2025-12-13 17:06:41] 2025-12-13 22:06:08,782 | INFO     | current memory leak: -76.56 B/s (using 80 data points, chi2=0.06)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,782 | INFO     | could have reported an average CPU frequency of 2141 MHz (6 samples)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,782 | INFO     | ..............................
[2025-12-13 17:06:41] 2025-12-13 22:06:08,782 | INFO     | . Timing measurements:
[2025-12-13 17:06:41] 2025-12-13 22:06:08,782 | INFO     | . get job = 0 s
[2025-12-13 17:06:41] 2025-12-13 22:06:08,782 | INFO     | . initial setup = 2 s
[2025-12-13 17:06:41] 2025-12-13 22:06:08,783 | INFO     | . payload setup = 6 s
[2025-12-13 17:06:41] 2025-12-13 22:06:08,783 | INFO     | . stage-in = 0 s
[2025-12-13 17:06:41] 2025-12-13 22:06:08,783 | INFO     | . payload execution = 5305 s
[2025-12-13 17:06:41] 2025-12-13 22:06:08,783 | INFO     | . stage-out = 0 s
[2025-12-13 17:06:41] 2025-12-13 22:06:08,783 | INFO     | . log creation = 0 s
[2025-12-13 17:06:41] 2025-12-13 22:06:08,783 | INFO     | ..............................
[2025-12-13 17:06:41] 2025-12-13 22:06:08,861 | INFO     | 
[2025-12-13 17:06:41] 2025-12-13 22:06:08,861 | INFO     | job summary report
[2025-12-13 17:06:41] 2025-12-13 22:06:08,861 | INFO     | --------------------------------------------------
[2025-12-13 17:06:41] 2025-12-13 22:06:08,861 | INFO     | PanDA job id: 6929275855
[2025-12-13 17:06:41] 2025-12-13 22:06:08,861 | INFO     | task id: 47898836
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | errors: (none)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | pilot state: finished 
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | transexitcode: 0
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | exeerrorcode: 0
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | exeerrordiag: 
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | exitcode: 0
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | exitmsg: OK
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | cpuconsumptiontime: 58935 s
[2025-12-13 17:06:41] 2025-12-13 22:06:08,862 | INFO     | nevents: 400
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | neventsw: 0
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | pid: 11995
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | pgrp: 11995
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | corecount: 12
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | event service: False
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | sizes: {0: 2284003, 5: 2284265, 11: 2284321, 5316: 2310825, 5317: 2319879, 5322: 2320017}
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | --------------------------------------------------
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | 
[2025-12-13 17:06:41] 2025-12-13 22:06:08,863 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 17:06:41] 2025-12-13 22:06:08,890 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,891 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,891 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,891 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,891 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,891 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,892 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,892 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,892 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,892 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,892 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,892 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,893 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,893 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,893 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,893 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 17:06:41] 2025-12-13 22:06:08,893 | INFO     | job 6929275855 has completed (purged errors)
[2025-12-13 17:06:41] 2025-12-13 22:06:08,894 | INFO     | overall cleanup function is called
[2025-12-13 17:06:41] 2025-12-13 22:06:09,902 | INFO     | --- collectZombieJob: --- 10, [11995]
[2025-12-13 17:06:41] 2025-12-13 22:06:09,903 | INFO     | zombie collector waiting for pid 11995
[2025-12-13 17:06:41] 2025-12-13 22:06:09,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 17:06:41] 2025-12-13 22:06:09,903 | INFO     | collected zombie processes
[2025-12-13 17:06:41] 2025-12-13 22:06:09,903 | INFO     | will attempt to kill all subprocesses of pid=11995
[2025-12-13 17:06:41] 2025-12-13 22:06:09,992 | INFO     | process IDs to be killed: [11995] (in reverse order)
[2025-12-13 17:06:41] 2025-12-13 22:06:10,041 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 17:06:41] 2025-12-13 22:06:10,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 17:06:41] 2025-12-13 22:06:10,045 | INFO     | did not find any defunct processes belonging to 11995
[2025-12-13 17:06:41] 2025-12-13 22:06:10,049 | INFO     | did not find any defunct processes belonging to 11995
[2025-12-13 17:06:41] 2025-12-13 22:06:10,049 | INFO     | ready for new job
[2025-12-13 17:06:41] 2025-12-13 22:06:10,049 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 17:06:41] 2025-12-13 22:06:10,051 | INFO     | ***************************************
[2025-12-13 17:06:41] 2025-12-13 22:06:10,051 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 17:06:41] 2025-12-13 22:06:10,051 | INFO     | ***************************************
[2025-12-13 17:06:41] 2025-12-13 22:06:10,051 | INFO     | 
[2025-12-13 17:06:41] 2025-12-13 22:06:10,051 | INFO     | architecture information:
[2025-12-13 17:06:41] 2025-12-13 22:06:10,052 | INFO     | executing command: cat /etc/os-release
[2025-12-13 17:06:41] 2025-12-13 22:06:10,067 | INFO     | cat /etc/os-release:
[2025-12-13 17:06:41] NAME="CentOS Linux"
[2025-12-13 17:06:41] VERSION="7 (Core)"
[2025-12-13 17:06:41] ID="centos"
[2025-12-13 17:06:41] ID_LIKE="rhel fedora"
[2025-12-13 17:06:41] VERSION_ID="7"
[2025-12-13 17:06:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 17:06:41] ANSI_COLOR="0;31"
[2025-12-13 17:06:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 17:06:41] HOME_URL="https://www.centos.org/"
[2025-12-13 17:06:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 17:06:41] 
[2025-12-13 17:06:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 17:06:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 17:06:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 17:06:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 17:06:41] 
[2025-12-13 17:06:41] 2025-12-13 22:06:10,067 | INFO     | ***************************************
[2025-12-13 17:06:41] 2025-12-13 22:06:10,570 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 17:06:41] 2025-12-13 22:06:10,586 | INFO     | sufficient remaining disk space (18582863872 B)
[2025-12-13 17:06:41] 2025-12-13 22:06:10,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 17:06:41] 2025-12-13 22:06:10,587 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 17:06:41] 2025-12-13 22:06:10,587 | INFO     | update_server=False
[2025-12-13 17:06:41] 2025-12-13 22:06:10,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 17:06:41] 2025-12-13 22:06:10,587 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:06:41] 2025-12-13 22:06:10,588 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:06:41] 2025-12-13 22:06:10,703 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 17:06:41] 2025-12-13 22:06:10,703 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 17:06:41] 2025-12-13 22:06:10,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:06:41] 2025-12-13 22:06:10,703 | INFO     | will abort loop
[2025-12-13 17:06:41] 2025-12-13 22:06:11,153 | INFO     | all data control threads have been joined
[2025-12-13 17:06:41] 2025-12-13 22:06:11,593 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:11,593 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:11,636 | INFO     | all payload control threads have been joined
[2025-12-13 17:06:41] 2025-12-13 22:06:11,709 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:11,747 | INFO     | all job control threads have been joined
[2025-12-13 17:06:41] 2025-12-13 22:06:12,034 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:06:41] 2025-12-13 22:06:12,158 | INFO     | [data] control thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:12,278 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:12,284 | INFO     | [job] validate thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:12,425 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:12,493 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:12,571 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:12,582 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:12,641 | INFO     | [payload] control thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:12,752 | INFO     | [job] control thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:13,013 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:13,168 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:14,040 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:14,593 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:06:41] 2025-12-13 22:06:18,553 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:06:41] 2025-12-13 22:06:20,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564825737024)>', '<ExcThread(monitor, started 140563877721856)>']
[2025-12-13 17:06:41] 2025-12-13 22:06:25,528 | INFO     | all workflow threads have been joined
[2025-12-13 17:06:41] 2025-12-13 22:06:25,532 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:06:41] 2025-12-13 22:06:25,532 | INFO     | traces error code: 0
[2025-12-13 17:06:41] 2025-12-13 22:06:25,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:06:41] 2025-12-13 22:06:41,252 | INFO     | PID=5564 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 17:06:41] 2025-12-13 22:06:41,252 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:06:41] 2025-12-13 22:06:41,252 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:06:41] 2025-12-13 22:06:41,253 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:06:41] 2025-12-13 22:06:41,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:06:41] 2025-12-13 22:06:41,253 | INFO     | [monitor] control thread has ended
[2025-12-13 17:06:41] 2025-12-13 22:06:41,355 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:06:41] 2025-12-13 22:06:41,358 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:06:41] 2025-12-13 22:06:41,362 [wrapper] pilotpid: 5564
[2025-12-13 17:06:41] 2025-12-13 22:06:41,366 [wrapper] Pilot exit status: 0
[2025-12-13 17:06:41] 2025-12-13 22:06:41,381 [wrapper] pandaids: 6929275855
[2025-12-13 17:06:41] 2025-12-13 22:06:41,420 [wrapper] cleanup supervisor_pilot 16830 5565
[2025-12-13 17:06:41] 2025-12-13 22:06:41,424 [wrapper] Test setup, not cleaning
[2025-12-13 17:06:41] 2025-12-13 22:06:41,428 [wrapper] apfmon messages muted
[2025-12-13 17:06:41] 2025-12-13 22:06:41,431 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:06:41] 2025-12-13 22:06:41,435 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:06:41]  *** Error codes and diagnostics ***
[2025-12-13 17:06:41]     "exeErrorCode": 0,
[2025-12-13 17:06:41]     "exeErrorDiag": "",
[2025-12-13 17:06:41]     "pilotErrorCode": 0,
[2025-12-13 17:06:41]     "pilotErrorDiag": "",
[2025-12-13 17:06:41]  *** Listing of results directory ***
[2025-12-13 17:06:41] total 407848
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 05:01 pilot3.tar.gz
[2025-12-13 17:06:41] -rwx------ 1 boincer umatlas     36322 Dec 13 05:03 runpilot2-wrapper.sh
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 05:05 queuedata.json
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas       100 Dec 13 15:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:06:41] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 15:36 run_atlas
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas       105 Dec 13 15:36 job.xml
[2025-12-13 17:06:41] -rw-r--r-- 2 boincer umatlas 212485974 Dec 13 15:36 EVNT.47898833._000041.pool.root.1
[2025-12-13 17:06:41] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 15:36 start_atlas.sh
[2025-12-13 17:06:41] drwxrwx--x 2 boincer umatlas      4096 Dec 13 15:36 shared
[2025-12-13 17:06:41] -rw-r--r-- 2 boincer umatlas    592397 Dec 13 15:36 input.tar.gz
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas         0 Dec 13 15:36 boinc_lockfile
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas      2547 Dec 13 15:36 pandaJob.out
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas        57 Dec 13 15:36 setup.sh.local
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas    991736 Dec 13 15:37 agis_schedconf.cvmfs.json
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas   1516240 Dec 13 15:37 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:06:41] drwx------ 5 boincer umatlas      4096 Dec 13 15:37 pilot3
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas      5954 Dec 13 17:03 init_data.xml
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas 198937471 Dec 13 17:05 HITS.47898836._001003.pool.root.1
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas       529 Dec 13 17:05 boinc_task_state.xml
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas      1046 Dec 13 17:05 memory_monitor_summary.json
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas    382823 Dec 13 17:06 log.47898836._001003.job.log.tgz.1
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas      7846 Dec 13 17:06 heartbeat.json
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 17:06 boinc_mmap_file
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas        27 Dec 13 17:06 wrapper_checkpoint.txt
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas       744 Dec 13 17:06 pilotlog.txt
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas        95 Dec 13 17:06 pilot_heartbeat.json
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas    765050 Dec 13 17:06 log.47898836._001003.job.log.1
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas       357 Dec 13 17:06 output.list
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas       620 Dec 13 17:06 runtime_log
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas   1167360 Dec 13 17:06 result.tar.gz
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 17:06 runtime_log.err
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas       659 Dec 13 17:06 O2WLDmeebo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmppOKDmVO60qn.diag
[2025-12-13 17:06:41] -rw-r--r-- 1 boincer umatlas     21637 Dec 13 17:06 stderr.txt
[2025-12-13 17:06:41] HITS file was successfully produced:
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas 198937471 Dec 13 17:05 shared/HITS.pool.root.1
[2025-12-13 17:06:41]  *** Contents of shared directory: ***
[2025-12-13 17:06:41] total 403528
[2025-12-13 17:06:41] -rw-r--r-- 2 boincer umatlas 212485974 Dec 13 15:36 ATLAS.root_0
[2025-12-13 17:06:41] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 15:36 start_atlas.sh
[2025-12-13 17:06:41] -rw-r--r-- 2 boincer umatlas    592397 Dec 13 15:36 input.tar.gz
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas 198937471 Dec 13 17:05 HITS.pool.root.1
[2025-12-13 17:06:41] -rw------- 1 boincer umatlas   1167360 Dec 13 17:06 result.tar.gz
17:06:42 (808): run_atlas exited; CPU time 58887.263695
17:06:42 (808): called boinc_finish(0)

</stderr_txt>
]]>

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