Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:10:13 (344797): wrapper (7.7.26015): starting
08:10:13 (344797): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 08:10:14] Arguments: --nthreads 4
[2025-12-14 08:10:14] Threads: 4
[2025-12-14 08:10:14] Checking for CVMFS
[2025-12-14 08:10:14] No cvmfs_config command found, will try listing directly
[2025-12-14 08:10:14] CVMFS is ok
[2025-12-14 08:10:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 08:10:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 08:10:14] Further information can be found at the LHC@home message board.
[2025-12-14 08:10:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 08:10:14] Checking for apptainer binary...
[2025-12-14 08:10:14] which: no apptainer in ((null))
[2025-12-14 08:10:14] apptainer is not installed, using version from CVMFS
[2025-12-14 08:10:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 08:10:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2025-12-14 08:10:14] apptainer works
[2025-12-14 08:10:14] Set ATHENA_PROC_NUMBER=4
[2025-12-14 08:10:14] Set ATHENA_CORE_NUMBER=4
[2025-12-14 08:10:14] Starting ATLAS job with PandaID=6929311446
[2025-12-14 08:10:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:38:23 (524877): wrapper (7.7.26015): starting
11:38:23 (524877): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 11:38:23] Arguments: --nthreads 4
[2025-12-14 11:38:23] Threads: 4
[2025-12-14 11:38:23] This job has been restarted, cleaning up previous attempt
[2025-12-14 11:38:23] Checking for CVMFS
[2025-12-14 11:38:23] No cvmfs_config command found, will try listing directly
[2025-12-14 11:38:23] CVMFS is ok
[2025-12-14 11:38:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 11:38:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 11:38:23] Further information can be found at the LHC@home message board.
[2025-12-14 11:38:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 11:38:23] Checking for apptainer binary...
[2025-12-14 11:38:23] which: no apptainer in ((null))
[2025-12-14 11:38:23] apptainer is not installed, using version from CVMFS
[2025-12-14 11:38:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 11:38:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2025-12-14 11:38:24] apptainer works
[2025-12-14 11:38:24] Set ATHENA_PROC_NUMBER=4
[2025-12-14 11:38:24] Set ATHENA_CORE_NUMBER=4
[2025-12-14 11:38:24] Starting ATLAS job with PandaID=6929311446
[2025-12-14 11:38:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 16:37:53]  *** The last 200 lines of the pilot log: ***
[2025-12-14 16:37:53] 2025-12-14 15:04:10,264 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 16:37:53] 2025-12-14 15:04:11,374 | INFO     | time since job start (15937s) is within the limit (174528.0s)
[2025-12-14 16:37:53] 2025-12-14 15:04:12,789 | WARNING  | process 535330 can no longer be monitored (due to stat problems) - aborting
[2025-12-14 16:37:53] 2025-12-14 15:04:12,789 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6929311446/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 16:37:53] 2025-12-14 15:04:13,162 | INFO     | number of running child processes to parent process 535330: 1
[2025-12-14 16:37:53] 2025-12-14 15:04:13,162 | INFO     | maximum number of monitored processes: 6
[2025-12-14 16:37:53] 2025-12-14 15:04:13,379 | INFO     | time since job start (15939s) is within the limit (174528.0s)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,338 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 16:37:53] 2025-12-14 15:04:14,346 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2494.5885749999998
[2025-12-14 16:37:53] 2025-12-14 15:04:14,354 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6929311446/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,355 | INFO     | extracted standard info from prmon json
[2025-12-14 16:37:53] 2025-12-14 15:04:14,355 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 16:37:53] 2025-12-14 15:04:14,355 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 16:37:53] 2025-12-14 15:04:14,356 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 16:37:53] 2025-12-14 15:04:14,356 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 16:37:53] 2025-12-14 15:04:14,361 | INFO     | fitting pss+swap vs Time
[2025-12-14 16:37:53] 2025-12-14 15:04:14,362 | INFO     | sum of square deviations: 5513070810.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,364 | INFO     | sum of deviations: -40224993685.99999
[2025-12-14 16:37:53] 2025-12-14 15:04:14,365 | INFO     | mean x: 1765716671.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,365 | INFO     | mean y: 2358142.049808429
[2025-12-14 16:37:53] 2025-12-14 15:04:14,365 | INFO     | intersect: 12885548724.947458
[2025-12-14 16:37:53] 2025-12-14 15:04:14,366 | INFO     | chi2: 1.7606423269590539
[2025-12-14 16:37:53] 2025-12-14 15:04:14,366 | INFO     | sum of square deviations: 5202255680.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,368 | INFO     | sum of deviations: -39491710246.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,369 | INFO     | mean x: 1765716518.5
[2025-12-14 16:37:53] 2025-12-14 15:04:14,369 | INFO     | mean y: 2358501.875
[2025-12-14 16:37:53] 2025-12-14 15:04:14,369 | INFO     | intersect: 13406383489.200863
[2025-12-14 16:37:53] 2025-12-14 15:04:14,369 | INFO     | chi2: 1.757192944046351
[2025-12-14 16:37:53] 2025-12-14 15:04:14,370 | INFO     | current chi2=1.757192944046351 (change=0.1959161642251677 %)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,370 | INFO     | right removable region: 255
[2025-12-14 16:37:53] 2025-12-14 15:04:14,370 | INFO     | sum of square deviations: 5202255680.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,373 | INFO     | sum of deviations: -69736659120.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,373 | INFO     | mean x: 1765716823.5
[2025-12-14 16:37:53] 2025-12-14 15:04:14,373 | INFO     | mean y: 2372448.1875
[2025-12-14 16:37:53] 2025-12-14 15:04:14,373 | INFO     | intersect: 23671949608.006893
[2025-12-14 16:37:53] 2025-12-14 15:04:14,374 | INFO     | chi2: 0.46470140825090306
[2025-12-14 16:37:53] 2025-12-14 15:04:14,374 | INFO     | current chi2=0.46470140825090306 (change=73.60614355707749 %)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,374 | INFO     | sum of square deviations: 4903347750.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,377 | INFO     | sum of deviations: -60075528530.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,377 | INFO     | mean x: 1765716976.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,377 | INFO     | mean y: 2367506.035856574
[2025-12-14 16:37:53] 2025-12-14 15:04:14,377 | INFO     | intersect: 21635828148.837162
[2025-12-14 16:37:53] 2025-12-14 15:04:14,378 | INFO     | chi2: 0.4445316256409876
[2025-12-14 16:37:53] 2025-12-14 15:04:14,378 | INFO     | current chi2=0.4445316256409876 (change=4.340374755013728 %)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,378 | INFO     | left removable region: 20
[2025-12-14 16:37:53] 2025-12-14 15:04:14,379 | INFO     | sum of square deviations: 4024149870.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,381 | INFO     | sum of deviations: -32299555937.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,381 | INFO     | mean x: 1765717098.0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,381 | INFO     | mean y: 2353077.9319148934
[2025-12-14 16:37:53] 2025-12-14 15:04:14,381 | INFO     | intersect: 14174757192.63461
[2025-12-14 16:37:53] 2025-12-14 15:04:14,382 | INFO     | chi2: 0.3110235120291918
[2025-12-14 16:37:53] 2025-12-14 15:04:14,382 | INFO     | current memory leak: -8.03 B/s (using 235 data points, chi2=0.31)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,382 | INFO     | could have reported an average CPU frequency of 2424 MHz (12 samples)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,383 | INFO     | ..............................
[2025-12-14 16:37:53] 2025-12-14 15:04:14,383 | INFO     | . Timing measurements:
[2025-12-14 16:37:53] 2025-12-14 15:04:14,383 | INFO     | . get job = 0 s
[2025-12-14 16:37:53] 2025-12-14 15:04:14,383 | INFO     | . initial setup = 1 s
[2025-12-14 16:37:53] 2025-12-14 15:04:14,383 | INFO     | . payload setup = 5 s
[2025-12-14 16:37:53] 2025-12-14 15:04:14,383 | INFO     | . stage-in = 0 s
[2025-12-14 16:37:53] 2025-12-14 15:04:14,383 | INFO     | . payload execution = 15907 s
[2025-12-14 16:37:53] 2025-12-14 15:04:14,384 | INFO     | . stage-out = 1 s
[2025-12-14 16:37:53] 2025-12-14 15:04:14,384 | INFO     | . log creation = 0 s
[2025-12-14 16:37:53] 2025-12-14 15:04:14,384 | INFO     | ..............................
[2025-12-14 16:37:53] 2025-12-14 15:04:14,594 | INFO     | 
[2025-12-14 16:37:53] 2025-12-14 15:04:14,594 | INFO     | job summary report
[2025-12-14 16:37:53] 2025-12-14 15:04:14,594 | INFO     | --------------------------------------------------
[2025-12-14 16:37:53] 2025-12-14 15:04:14,594 | INFO     | PanDA job id: 6929311446
[2025-12-14 16:37:53] 2025-12-14 15:04:14,594 | INFO     | task id: 47886831
[2025-12-14 16:37:53] 2025-12-14 15:04:14,595 | INFO     | errors: (none)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,595 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 16:37:53] 2025-12-14 15:04:14,595 | INFO     | pilot state: finished 
[2025-12-14 16:37:53] 2025-12-14 15:04:14,595 | INFO     | transexitcode: 0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,595 | INFO     | exeerrorcode: 0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,595 | INFO     | exeerrordiag: 
[2025-12-14 16:37:53] 2025-12-14 15:04:14,595 | INFO     | exitcode: 0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,596 | INFO     | exitmsg: OK
[2025-12-14 16:37:53] 2025-12-14 15:04:14,596 | INFO     | cpuconsumptiontime: 59981 s
[2025-12-14 16:37:53] 2025-12-14 15:04:14,596 | INFO     | nevents: 400
[2025-12-14 16:37:53] 2025-12-14 15:04:14,596 | INFO     | neventsw: 0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,596 | INFO     | pid: 535330
[2025-12-14 16:37:53] 2025-12-14 15:04:14,596 | INFO     | pgrp: 535330
[2025-12-14 16:37:53] 2025-12-14 15:04:14,596 | INFO     | corecount: 4
[2025-12-14 16:37:53] 2025-12-14 15:04:14,596 | INFO     | event service: False
[2025-12-14 16:37:53] 2025-12-14 15:04:14,597 | INFO     | sizes: {0: 2284000, 1: 2284000, 5: 2284290, 11: 2284346, 15918: 2315615, 15919: 2324635, 15920: 2324819, 15924: 2325013}
[2025-12-14 16:37:53] 2025-12-14 15:04:14,597 | INFO     | --------------------------------------------------
[2025-12-14 16:37:53] 2025-12-14 15:04:14,597 | INFO     | 
[2025-12-14 16:37:53] 2025-12-14 15:04:14,597 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-12-14 16:37:53] 2025-12-14 15:04:14,616 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,617 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,617 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,617 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,617 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,617 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,617 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,618 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,618 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,618 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,618 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,618 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,618 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,618 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,619 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,619 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,619 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,619 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,619 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 16:37:53] 2025-12-14 15:04:14,619 | INFO     | job 6929311446 has completed (purged errors)
[2025-12-14 16:37:53] 2025-12-14 15:04:14,620 | INFO     | overall cleanup function is called
[2025-12-14 16:37:53] 2025-12-14 15:04:14,994 | INFO     | PID=528555 has CPU usage=15.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 16:37:53] 2025-12-14 15:04:14,995 | INFO     | .. there are 3 such processes running
[2025-12-14 16:37:53] 2025-12-14 15:04:15,629 | INFO     | --- collectZombieJob: --- 10, [535330]
[2025-12-14 16:37:53] 2025-12-14 15:04:15,630 | INFO     | zombie collector waiting for pid 535330
[2025-12-14 16:37:53] 2025-12-14 15:04:15,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 16:37:53] 2025-12-14 15:04:15,630 | INFO     | collected zombie processes
[2025-12-14 16:37:53] 2025-12-14 15:04:15,630 | INFO     | will attempt to kill all subprocesses of pid=535330
[2025-12-14 16:37:53] 2025-12-14 15:04:15,988 | INFO     | process IDs to be killed: [535330] (in reverse order)
[2025-12-14 16:37:53] 2025-12-14 15:04:16,081 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 16:37:53] 2025-12-14 15:04:16,081 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 16:37:53] 2025-12-14 15:04:16,092 | INFO     | did not find any defunct processes belonging to 535330
[2025-12-14 16:37:53] 2025-12-14 15:04:16,100 | INFO     | did not find any defunct processes belonging to 535330
[2025-12-14 16:37:53] 2025-12-14 15:04:16,101 | INFO     | ready for new job
[2025-12-14 16:37:53] 2025-12-14 15:04:16,101 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 16:37:53] 2025-12-14 15:04:16,103 | INFO     | ***************************************
[2025-12-14 16:37:53] 2025-12-14 15:04:16,104 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 16:37:53] 2025-12-14 15:04:16,104 | INFO     | ***************************************
[2025-12-14 16:37:53] 2025-12-14 15:04:16,104 | INFO     | 
[2025-12-14 16:37:53] 2025-12-14 15:04:16,106 | INFO     | architecture information:
[2025-12-14 16:37:53] 2025-12-14 15:04:16,107 | INFO     | executing command: cat /etc/os-release
[2025-12-14 16:37:53] 2025-12-14 15:04:16,121 | INFO     | cat /etc/os-release:
[2025-12-14 16:37:53] NAME="CentOS Linux"
[2025-12-14 16:37:53] VERSION="7 (Core)"
[2025-12-14 16:37:53] ID="centos"
[2025-12-14 16:37:53] ID_LIKE="rhel fedora"
[2025-12-14 16:37:53] VERSION_ID="7"
[2025-12-14 16:37:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 16:37:53] ANSI_COLOR="0;31"
[2025-12-14 16:37:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 16:37:53] HOME_URL="https://www.centos.org/"
[2025-12-14 16:37:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 16:37:53] 
[2025-12-14 16:37:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 16:37:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 16:37:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 16:37:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 16:37:53] 
[2025-12-14 16:37:53] 2025-12-14 15:04:16,122 | INFO     | ***************************************
[2025-12-14 16:37:53] 2025-12-14 15:04:16,625 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-12-14 16:37:53] 2025-12-14 15:04:16,640 | INFO     | sufficient remaining disk space (1671585333248 B)
[2025-12-14 16:37:53] 2025-12-14 15:04:16,640 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 16:37:53] 2025-12-14 15:04:16,641 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 16:37:53] 2025-12-14 15:04:16,641 | INFO     | update_server=False
[2025-12-14 16:37:53] 2025-12-14 15:04:16,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 16:37:53] 2025-12-14 15:04:16,641 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 16:37:53] 2025-12-14 15:04:16,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 16:37:53] 2025-12-14 15:04:16,671 | INFO     | aborting loop
[2025-12-14 16:37:53] 2025-12-14 15:04:17,115 | INFO     | all job control threads have been joined
[2025-12-14 16:37:53] 2025-12-14 15:04:17,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 16:37:53] 2025-12-14 15:04:17,646 | INFO     | [job] retrieve thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:17,675 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:17,675 | INFO     | [job] job monitor thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:17,682 | INFO     | all data control threads have been joined
[2025-12-14 16:37:53] 2025-12-14 15:04:17,737 | INFO     | [payload] failed_post thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:17,808 | INFO     | all payload control threads have been joined
[2025-12-14 16:37:53] 2025-12-14 15:04:18,097 | INFO     | [data] copytool_in thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:18,119 | INFO     | [job] control thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:18,159 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:18,672 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:18,687 | INFO     | [data] control thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:18,714 | INFO     | [job] validate thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:18,813 | INFO     | [payload] control thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:18,872 | INFO     | [payload] validate_post thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:19,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:19,512 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 16:37:53] 2025-12-14 15:04:19,595 | INFO     | [data] copytool_out thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:20,517 | INFO     | [job] queue monitor thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:20,647 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 16:37:53] 2025-12-14 15:04:47,508 | INFO     | PID=528555 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-14 16:37:53] 2025-12-14 15:04:47,509 | INFO     | .. there are 3 such processes running
[2025-12-14 16:37:53] 2025-12-14 15:04:47,510 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 16:37:53] 2025-12-14 15:04:47,510 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 16:37:53] 2025-12-14 15:04:47,510 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 16:37:53] 2025-12-14 15:05:00,618 | INFO     | [monitor] cgroup control has ended
[2025-12-14 16:37:53] 2025-12-14 15:05:01,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22756048570176)>', '<ExcThread(monitor, started 22755604944640)>']
[2025-12-14 16:37:53] 2025-12-14 15:05:02,576 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 16:37:53] 2025-12-14 15:05:02,576 | INFO     | [monitor] control thread has ended
[2025-12-14 16:37:53] 2025-12-14 15:05:06,648 | INFO     | all workflow threads have been joined
[2025-12-14 16:37:53] 2025-12-14 15:05:06,649 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 16:37:53] 2025-12-14 15:05:06,649 | INFO     | traces error code: 0
[2025-12-14 16:37:53] 2025-12-14 15:05:06,649 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 16:37:53] 2025-12-14 15:05:06,796 [wrapper] ==== pilot stdout END ====
[2025-12-14 16:37:53] 2025-12-14 15:05:06,799 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 16:37:53] 2025-12-14 15:05:06,801 [wrapper] pilotpid: 528555
[2025-12-14 16:37:53] 2025-12-14 15:05:06,803 [wrapper] Pilot exit status: 0
[2025-12-14 16:37:53] 2025-12-14 15:05:06,813 [wrapper] pandaids: 6929311446 6929311446
[2025-12-14 16:37:53] 2025-12-14 15:05:06,882 [wrapper] cleanup supervisor_pilot  768725 528556
[2025-12-14 16:37:53] 2025-12-14 15:05:06,885 [wrapper] Test setup, not cleaning
[2025-12-14 16:37:53] 2025-12-14 15:05:06,888 [wrapper] apfmon messages muted
[2025-12-14 16:37:53] 2025-12-14 15:05:06,891 [wrapper] ==== wrapper stdout END ====
[2025-12-14 16:37:53] 2025-12-14 15:05:06,893 [wrapper] ==== wrapper stderr END ====
[2025-12-14 16:37:53]  *** Error codes and diagnostics ***
[2025-12-14 16:37:53]     "exeErrorCode": 0,
[2025-12-14 16:37:53]     "exeErrorDiag": "",
[2025-12-14 16:37:53]     "pilotErrorCode": 0,
[2025-12-14 16:37:53]     "pilotErrorDiag": "",
[2025-12-14 16:37:53]  *** Listing of results directory ***
[2025-12-14 16:37:53] total 528016
[2025-12-14 16:37:53] drwx------ 5 boinc boinc      4096 Dec  3 15:30 pilot3
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc    579449 Dec 13 14:45 pilot3.tar.gz
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc      5112 Dec 13 14:45 queuedata.json
[2025-12-14 16:37:53] -rwx------ 1 boinc boinc     36322 Dec 13 14:45 runpilot2-wrapper.sh
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc       100 Dec 14 08:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 16:37:53] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 08:10 run_atlas
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc       105 Dec 14 08:10 job.xml
[2025-12-14 16:37:53] -rw-r--r-- 3 boinc boinc 193943792 Dec 14 08:10 EVNT.47886829._000218.pool.root.1
[2025-12-14 16:37:53] -rw-r--r-- 3 boinc boinc 193943792 Dec 14 08:10 ATLAS.root_0
[2025-12-14 16:37:53] -rw-r--r-- 2 boinc boinc     15847 Dec 14 08:10 start_atlas.sh
[2025-12-14 16:37:53] drwxrwx--x 2 boinc boinc      4096 Dec 14 08:10 shared
[2025-12-14 16:37:53] -rw-r--r-- 2 boinc boinc    592415 Dec 14 08:10 input.tar.gz
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc         0 Dec 14 08:10 boinc_lockfile
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc      2537 Dec 14 11:38 pandaJob.out
[2025-12-14 16:37:53] -rw------- 1 boinc boinc    991720 Dec 14 11:38 agis_schedconf.cvmfs.json
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc      6430 Dec 14 14:11 init_data.xml
[2025-12-14 16:37:53] -rw------- 1 boinc boinc 143520850 Dec 14 16:03 HITS.47886831._005457.pool.root.1
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc       530 Dec 14 16:03 boinc_task_state.xml
[2025-12-14 16:37:53] -rw------- 1 boinc boinc      1035 Dec 14 16:04 memory_monitor_summary.json
[2025-12-14 16:37:53] -rw------- 1 boinc boinc   1516240 Dec 14 16:04 agis_ddmendpoints.agis.ALL.json
[2025-12-14 16:37:53] -rw------- 1 boinc boinc    439432 Dec 14 16:04 log.47886831._005457.job.log.tgz.1
[2025-12-14 16:37:53] -rw------- 1 boinc boinc      7831 Dec 14 16:04 heartbeat.json
[2025-12-14 16:37:53] -rw------- 1 boinc boinc        97 Dec 14 16:04 pilot_heartbeat.json
[2025-12-14 16:37:53] -rw------- 1 boinc boinc      4833 Dec 14 16:05 pilotlog.txt
[2025-12-14 16:37:53] -rw------- 1 boinc boinc   2237984 Dec 14 16:05 log.47886831._005457.job.log.1
[2025-12-14 16:37:53] -rw------- 1 boinc boinc       357 Dec 14 16:05 output.list
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc       620 Dec 14 16:05 runtime_log
[2025-12-14 16:37:53] -rw------- 1 boinc boinc   2693120 Dec 14 16:05 result.tar.gz
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc      9283 Dec 14 16:05 runtime_log.err
[2025-12-14 16:37:53] -rw------- 1 boinc boinc       791 Dec 14 16:05 h7pLDmk7eo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgeTKDmGD5Obn.diag
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc        27 Dec 14 16:37 wrapper_checkpoint.txt
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc      8192 Dec 14 16:37 boinc_mmap_file
[2025-12-14 16:37:53] -rw-r--r-- 1 boinc boinc     23194 Dec 14 16:37 stderr.txt
[2025-12-14 16:37:53] HITS file was successfully produced:
[2025-12-14 16:37:53] -rw------- 1 boinc boinc 143520850 Dec 14 16:03 shared/HITS.pool.root.1
[2025-12-14 16:37:53]  *** Contents of shared directory: ***
[2025-12-14 16:37:53] total 332796
[2025-12-14 16:37:53] -rw-r--r-- 3 boinc boinc 193943792 Dec 14 08:10 ATLAS.root_0
[2025-12-14 16:37:53] -rw-r--r-- 2 boinc boinc     15847 Dec 14 08:10 start_atlas.sh
[2025-12-14 16:37:53] -rw-r--r-- 2 boinc boinc    592415 Dec 14 08:10 input.tar.gz
[2025-12-14 16:37:53] -rw------- 1 boinc boinc 143520850 Dec 14 16:03 HITS.pool.root.1
[2025-12-14 16:37:53] -rw------- 1 boinc boinc   2693120 Dec 14 16:05 result.tar.gz
16:37:55 (524877): run_atlas exited; CPU time 60616.426800
16:37:55 (524877): called boinc_finish(0)

</stderr_txt>
]]>

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