Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:53:00 (2964219): wrapper (7.7.26015): starting
14:53:00 (2964219): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 14:53:00] Arguments: --nthreads 8
[2025-12-13 14:53:00] Threads: 8
[2025-12-13 14:53:00] Checking for CVMFS
[2025-12-13 14:53:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 14:53:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 14:53:00] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 14:53:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 14:53:01] 2.13.2.0 6538 59324 240852 153971 0 254 36882932 40960001 10238 16776704 0 75418737 99.771 48009459 36756 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 14:53:01] CVMFS is ok
[2025-12-13 14:53:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 14:53:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 14:53:01] Further information can be found at the LHC@home message board.
[2025-12-13 14:53:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 14:53:01] Checking for apptainer binary...
[2025-12-13 14:53:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 14:53:01] Running /usr/bin/apptainer --version
[2025-12-13 14:53:01] apptainer version 1.4.4-1.el9
[2025-12-13 14:53:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 14:53:01] c-210-31-3.aglt2.org
[2025-12-13 14:53:01] apptainer works
[2025-12-13 14:53:01] Set ATHENA_PROC_NUMBER=8
[2025-12-13 14:53:01] Set ATHENA_CORE_NUMBER=8
[2025-12-13 14:53:01] Starting ATLAS job with PandaID=6929310089
[2025-12-13 14:53:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 19:08:02]  *** The last 200 lines of the pilot log: ***
[2025-12-13 19:08:02] 2025-12-14 00:07:21,577 | INFO     | time since job start (15233s) is within the limit (174528.0s)
[2025-12-13 19:08:02] 2025-12-14 00:07:21,749 | INFO     | monitor loop #1029: job 0:6929310089 is in state 'finished'
[2025-12-13 19:08:02] 2025-12-14 00:07:21,753 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 19:08:02] 2025-12-14 00:07:23,608 | INFO     | time since job start (15235s) is within the limit (174528.0s)
[2025-12-13 19:08:02] 2025-12-14 00:07:24,258 | INFO     | monitor loop #1030: job 0:6929310089 is in state 'finished'
[2025-12-13 19:08:02] 2025-12-14 00:07:24,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,415 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 19:08:02] 2025-12-14 00:07:25,423 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2731.4338214285717
[2025-12-13 19:08:02] 2025-12-14 00:07:25,442 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929310089/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,443 | INFO     | extracted standard info from prmon json
[2025-12-13 19:08:02] 2025-12-14 00:07:25,443 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 19:08:02] 2025-12-14 00:07:25,443 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 19:08:02] 2025-12-14 00:07:25,444 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 19:08:02] 2025-12-14 00:07:25,444 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 19:08:02] 2025-12-14 00:07:25,452 | INFO     | fitting pss+swap vs Time
[2025-12-13 19:08:02] 2025-12-14 00:07:25,453 | INFO     | sum of square deviations: 4786959785.574334
[2025-12-13 19:08:02] 2025-12-14 00:07:25,454 | INFO     | sum of deviations: 75922029319.9237
[2025-12-13 19:08:02] 2025-12-14 00:07:25,454 | INFO     | mean x: 1765663224.1726909
[2025-12-13 19:08:02] 2025-12-14 00:07:25,454 | INFO     | mean y: 2437235.606425703
[2025-12-13 19:08:02] 2025-12-14 00:07:25,454 | INFO     | intersect: -28001293959.028324
[2025-12-13 19:08:02] 2025-12-14 00:07:25,455 | INFO     | chi2: 3.14161316082705
[2025-12-13 19:08:02] 2025-12-14 00:07:25,459 | INFO     | sum of square deviations: 4504344345.422141
[2025-12-13 19:08:02] 2025-12-14 00:07:25,461 | INFO     | sum of deviations: 89423729813.96736
[2025-12-13 19:08:02] 2025-12-14 00:07:25,461 | INFO     | mean x: 1765663071.6762295
[2025-12-13 19:08:02] 2025-12-14 00:07:25,461 | INFO     | mean y: 2444383.4426229508
[2025-12-13 19:08:02] 2025-12-14 00:07:25,461 | INFO     | intersect: -35050865345.096214
[2025-12-13 19:08:02] 2025-12-14 00:07:25,462 | INFO     | chi2: 2.4486043092185015
[2025-12-13 19:08:02] 2025-12-14 00:07:25,462 | INFO     | current chi2=2.4486043092185015 (change=22.059012874332034 %)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,462 | INFO     | right removable region: 243
[2025-12-13 19:08:02] 2025-12-14 00:07:25,462 | INFO     | sum of square deviations: 4504318115.422141
[2025-12-13 19:08:02] 2025-12-14 00:07:25,468 | INFO     | sum of deviations: 18782970897.426193
[2025-12-13 19:08:02] 2025-12-14 00:07:25,468 | INFO     | mean x: 1765663376.6762295
[2025-12-13 19:08:02] 2025-12-14 00:07:25,468 | INFO     | mean y: 2467945.2459016396
[2025-12-13 19:08:02] 2025-12-14 00:07:25,468 | INFO     | intersect: -7360334363.323447
[2025-12-13 19:08:02] 2025-12-14 00:07:25,469 | INFO     | chi2: 0.9602439010309388
[2025-12-13 19:08:02] 2025-12-14 00:07:25,469 | INFO     | current chi2=0.9602439010309388 (change=69.43468683527706 %)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,469 | INFO     | sum of square deviations: 4233025495.263608
[2025-12-13 19:08:02] 2025-12-14 00:07:25,471 | INFO     | sum of deviations: -237524317.78242493
[2025-12-13 19:08:02] 2025-12-14 00:07:25,471 | INFO     | mean x: 1765663529.1799164
[2025-12-13 19:08:02] 2025-12-14 00:07:25,471 | INFO     | mean y: 2478625.8786610877
[2025-12-13 19:08:02] 2025-12-14 00:07:25,471 | INFO     | intersect: 101553867.84708947
[2025-12-13 19:08:02] 2025-12-14 00:07:25,475 | INFO     | chi2: 0.7570401455252587
[2025-12-13 19:08:02] 2025-12-14 00:07:25,475 | INFO     | current chi2=0.7570401455252587 (change=21.16168145275551 %)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,476 | INFO     | left removable region: 20
[2025-12-13 19:08:02] 2025-12-14 00:07:25,476 | INFO     | sum of square deviations: 3438477314.70853
[2025-12-13 19:08:02] 2025-12-14 00:07:25,477 | INFO     | sum of deviations: 10922501131.35426
[2025-12-13 19:08:02] 2025-12-14 00:07:25,477 | INFO     | mean x: 1765663651.192825
[2025-12-13 19:08:02] 2025-12-14 00:07:25,477 | INFO     | mean y: 2488716.5964125562
[2025-12-13 19:08:02] 2025-12-14 00:07:25,478 | INFO     | intersect: -5606233244.502086
[2025-12-13 19:08:02] 2025-12-14 00:07:25,478 | INFO     | chi2: 0.001200253583678172
[2025-12-13 19:08:02] 2025-12-14 00:07:25,478 | INFO     | current memory leak: 3.18 B/s (using 223 data points, chi2=0.00)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,479 | INFO     | could have reported an average CPU frequency of 2790 MHz (12 samples)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,479 | INFO     | ..............................
[2025-12-13 19:08:02] 2025-12-14 00:07:25,479 | INFO     | . Timing measurements:
[2025-12-13 19:08:02] 2025-12-14 00:07:25,479 | INFO     | . get job = 0 s
[2025-12-13 19:08:02] 2025-12-14 00:07:25,479 | INFO     | . initial setup = 2 s
[2025-12-13 19:08:02] 2025-12-14 00:07:25,479 | INFO     | . payload setup = 12 s
[2025-12-13 19:08:02] 2025-12-14 00:07:25,479 | INFO     | . stage-in = 0 s
[2025-12-13 19:08:02] 2025-12-14 00:07:25,483 | INFO     | . payload execution = 15159 s
[2025-12-13 19:08:02] 2025-12-14 00:07:25,483 | INFO     | . stage-out = 3 s
[2025-12-13 19:08:02] 2025-12-14 00:07:25,484 | INFO     | . log creation = 0 s
[2025-12-13 19:08:02] 2025-12-14 00:07:25,484 | INFO     | ..............................
[2025-12-13 19:08:02] 2025-12-14 00:07:25,669 | INFO     | time since job start (15237s) is within the limit (174528.0s)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,757 | INFO     | 
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | job summary report
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | --------------------------------------------------
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | PanDA job id: 6929310089
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | task id: 47886831
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | errors: (none)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | pilot state: finished 
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | transexitcode: 0
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | exeerrorcode: 0
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | exeerrordiag: 
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | exitcode: 0
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | exitmsg: OK
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | cpuconsumptiontime: 43218 s
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | nevents: 400
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | neventsw: 0
[2025-12-13 19:08:02] 2025-12-14 00:07:25,758 | INFO     | pid: 2986730
[2025-12-13 19:08:02] 2025-12-14 00:07:25,759 | INFO     | pgrp: 2986730
[2025-12-13 19:08:02] 2025-12-14 00:07:25,759 | INFO     | corecount: 8
[2025-12-13 19:08:02] 2025-12-14 00:07:25,759 | INFO     | event service: False
[2025-12-13 19:08:02] 2025-12-14 00:07:25,759 | INFO     | sizes: {0: 2283990, 1: 2283990, 11: 2284280, 12: 2284308, 15175: 2315539, 15176: 2315538, 15180: 2324720, 15181: 2324776, 15211: 2324970}
[2025-12-13 19:08:02] 2025-12-14 00:07:25,759 | INFO     | --------------------------------------------------
[2025-12-13 19:08:02] 2025-12-14 00:07:25,759 | INFO     | 
[2025-12-13 19:08:02] 2025-12-14 00:07:25,759 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | job 6929310089 has completed (purged errors)
[2025-12-13 19:08:02] 2025-12-14 00:07:25,833 | INFO     | overall cleanup function is called
[2025-12-13 19:08:02] 2025-12-14 00:07:26,850 | INFO     | --- collectZombieJob: --- 10, [2986730]
[2025-12-13 19:08:02] 2025-12-14 00:07:26,850 | INFO     | zombie collector waiting for pid 2986730
[2025-12-13 19:08:02] 2025-12-14 00:07:26,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 19:08:02] 2025-12-14 00:07:26,852 | INFO     | collected zombie processes
[2025-12-13 19:08:02] 2025-12-14 00:07:26,852 | INFO     | will attempt to kill all subprocesses of pid=2986730
[2025-12-13 19:08:02] 2025-12-14 00:07:27,833 | INFO     | process IDs to be killed: [2986730] (in reverse order)
[2025-12-13 19:08:02] 2025-12-14 00:07:28,100 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 19:08:02] 2025-12-14 00:07:28,101 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 19:08:02] 2025-12-14 00:07:28,150 | INFO     | did not find any defunct processes belonging to 2986730
[2025-12-13 19:08:02] 2025-12-14 00:07:28,212 | INFO     | did not find any defunct processes belonging to 2986730
[2025-12-13 19:08:02] 2025-12-14 00:07:28,212 | INFO     | ready for new job
[2025-12-13 19:08:02] 2025-12-14 00:07:28,212 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 19:08:02] 2025-12-14 00:07:28,214 | INFO     | ***************************************
[2025-12-13 19:08:02] 2025-12-14 00:07:28,215 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 19:08:02] 2025-12-14 00:07:28,215 | INFO     | ***************************************
[2025-12-13 19:08:02] 2025-12-14 00:07:28,215 | INFO     | 
[2025-12-13 19:08:02] 2025-12-14 00:07:28,227 | INFO     | architecture information:
[2025-12-13 19:08:02] 2025-12-14 00:07:28,232 | INFO     | executing command: cat /etc/os-release
[2025-12-13 19:08:02] 2025-12-14 00:07:28,299 | INFO     | cat /etc/os-release:
[2025-12-13 19:08:02] NAME="CentOS Linux"
[2025-12-13 19:08:02] VERSION="7 (Core)"
[2025-12-13 19:08:02] ID="centos"
[2025-12-13 19:08:02] ID_LIKE="rhel fedora"
[2025-12-13 19:08:02] VERSION_ID="7"
[2025-12-13 19:08:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 19:08:02] ANSI_COLOR="0;31"
[2025-12-13 19:08:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 19:08:02] HOME_URL="https://www.centos.org/"
[2025-12-13 19:08:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 19:08:02] 
[2025-12-13 19:08:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 19:08:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 19:08:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 19:08:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 19:08:02] 
[2025-12-13 19:08:02] 2025-12-14 00:07:28,299 | INFO     | ***************************************
[2025-12-13 19:08:02] 2025-12-14 00:07:28,802 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-13 19:08:02] 2025-12-14 00:07:28,876 | INFO     | sufficient remaining disk space (73978085376 B)
[2025-12-13 19:08:02] 2025-12-14 00:07:28,876 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 19:08:02] 2025-12-14 00:07:28,877 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 19:08:02] 2025-12-14 00:07:28,877 | INFO     | update_server=False
[2025-12-13 19:08:02] 2025-12-14 00:07:28,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 19:08:02] 2025-12-14 00:07:28,878 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 19:08:02] 2025-12-14 00:07:29,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 19:08:02] 2025-12-14 00:07:29,292 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 19:08:02] 2025-12-14 00:07:29,293 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 19:08:02] 2025-12-14 00:07:29,293 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 19:08:02] 2025-12-14 00:07:29,293 | INFO     | will abort loop
[2025-12-13 19:08:02] 2025-12-14 00:07:29,385 | INFO     | all job control threads have been joined
[2025-12-13 19:08:02] 2025-12-14 00:07:29,655 | INFO     | all data control threads have been joined
[2025-12-13 19:08:02] 2025-12-14 00:07:29,883 | INFO     | [job] retrieve thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,210 | INFO     | all payload control threads have been joined
[2025-12-13 19:08:02] 2025-12-14 00:07:30,335 | INFO     | [job] job monitor thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,391 | INFO     | [job] control thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,661 | INFO     | [data] control thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,737 | INFO     | [data] copytool_in thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 19:08:02] 2025-12-14 00:07:30,785 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,821 | INFO     | [payload] failed_post thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,822 | INFO     | [payload] validate_post thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,824 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:30,885 | INFO     | [data] copytool_out thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:31,163 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:31,216 | INFO     | [payload] control thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:31,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:31,375 | INFO     | [job] validate thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:31,777 | INFO     | [job] queue monitor thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:33,189 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 19:08:02] 2025-12-14 00:07:54,286 | INFO     | [monitor] cgroup control has ended
[2025-12-13 19:08:02] 2025-12-14 00:07:54,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140704263980864)>', '<ExcThread(monitor, started 140703774525184)>']
[2025-12-13 19:08:02] 2025-12-14 00:07:59,637 | INFO     | all workflow threads have been joined
[2025-12-13 19:08:02] 2025-12-14 00:07:59,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 19:08:02] 2025-12-14 00:07:59,638 | INFO     | traces error code: 0
[2025-12-13 19:08:02] 2025-12-14 00:07:59,643 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 19:08:02] 2025-12-14 00:08:00,572 | INFO     | PID=2971772 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 19:08:02] 2025-12-14 00:08:00,572 | INFO     | .. there are 10 such processes running
[2025-12-13 19:08:02] 2025-12-14 00:08:00,573 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 19:08:02] 2025-12-14 00:08:00,573 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 19:08:02] 2025-12-14 00:08:00,573 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 19:08:02] 2025-12-14 00:08:00,573 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 19:08:02] 2025-12-14 00:08:00,573 | INFO     | [monitor] control thread has ended
[2025-12-13 19:08:02] 2025-12-14 00:08:01,132 [wrapper] ==== pilot stdout END ====
[2025-12-13 19:08:02] 2025-12-14 00:08:01,165 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 19:08:02] 2025-12-14 00:08:01,224 [wrapper] pilotpid: 2971772
[2025-12-13 19:08:02] 2025-12-14 00:08:01,259 [wrapper] Pilot exit status: 0
[2025-12-13 19:08:02] 2025-12-14 00:08:01,372 [wrapper] pandaids: 6929310089
[2025-12-13 19:08:02] 2025-12-14 00:08:01,662 [wrapper] cleanup supervisor_pilot 3335481 2971773
[2025-12-13 19:08:02] 2025-12-14 00:08:01,676 [wrapper] Test setup, not cleaning
[2025-12-13 19:08:02] 2025-12-14 00:08:01,698 [wrapper] apfmon messages muted
[2025-12-13 19:08:02] 2025-12-14 00:08:01,727 [wrapper] ==== wrapper stdout END ====
[2025-12-13 19:08:02] 2025-12-14 00:08:01,746 [wrapper] ==== wrapper stderr END ====
[2025-12-13 19:08:02]  *** Error codes and diagnostics ***
[2025-12-13 19:08:02]     "exeErrorCode": 0,
[2025-12-13 19:08:02]     "exeErrorDiag": "",
[2025-12-13 19:08:02]     "pilotErrorCode": 0,
[2025-12-13 19:08:02]     "pilotErrorDiag": "",
[2025-12-13 19:08:02]  *** Listing of results directory ***
[2025-12-13 19:08:02] total 341280
[2025-12-13 19:08:02] -rwx------. 1 boincer umatlas     36322 Dec 13 08:45 runpilot2-wrapper.sh
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 08:45 pilot3.tar.gz
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 08:45 queuedata.json
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas       100 Dec 13 14:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 19:08:02] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 14:52 run_atlas
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas       105 Dec 13 14:52 job.xml
[2025-12-13 19:08:02] -rw-r--r--. 2 boincer umatlas 194116981 Dec 13 14:53 EVNT.47886829._000195.pool.root.1
[2025-12-13 19:08:02] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 14:53 start_atlas.sh
[2025-12-13 19:08:02] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 14:53 shared
[2025-12-13 19:08:02] -rw-r--r--. 2 boincer umatlas    592416 Dec 13 14:53 input.tar.gz
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas         0 Dec 13 14:53 boinc_lockfile
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas      2538 Dec 13 14:53 pandaJob.out
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas        57 Dec 13 14:53 setup.sh.local
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas    991736 Dec 13 14:53 agis_schedconf.cvmfs.json
[2025-12-13 19:08:02] drwx------. 5 boincer umatlas      4096 Dec 13 14:53 pilot3
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas      6843 Dec 13 19:00 init_data.xml
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas 146399602 Dec 13 19:06 HITS.47886831._004862.pool.root.1
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas       531 Dec 13 19:06 boinc_task_state.xml
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas      1042 Dec 13 19:06 memory_monitor_summary.json
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas   1516240 Dec 13 19:06 agis_ddmendpoints.agis.ALL.json
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas    462282 Dec 13 19:06 log.47886831._004862.job.log.tgz.1
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas      7821 Dec 13 19:07 heartbeat.json
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas        95 Dec 13 19:08 pilot_heartbeat.json
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas       823 Dec 13 19:08 pilotlog.txt
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas        28 Dec 13 19:08 wrapper_checkpoint.txt
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas   2058281 Dec 13 19:08 log.47886831._004862.job.log.1
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas       357 Dec 13 19:08 output.list
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 19:08 boinc_mmap_file
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas       620 Dec 13 19:08 runtime_log
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas   2539520 Dec 13 19:08 result.tar.gz
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas      9353 Dec 13 19:08 runtime_log.err
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas       657 Dec 13 19:08 d3XNDmT7eo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjTPKDmwMZ9qm.diag
[2025-12-13 19:08:02] -rw-r--r--. 1 boincer umatlas     21405 Dec 13 19:08 stderr.txt
[2025-12-13 19:08:02] HITS file was successfully produced:
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas 146399602 Dec 13 19:06 shared/HITS.pool.root.1
[2025-12-13 19:08:02]  *** Contents of shared directory: ***
[2025-12-13 19:08:02] total 335620
[2025-12-13 19:08:02] -rw-r--r--. 2 boincer umatlas 194116981 Dec 13 14:53 ATLAS.root_0
[2025-12-13 19:08:02] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 14:53 start_atlas.sh
[2025-12-13 19:08:02] -rw-r--r--. 2 boincer umatlas    592416 Dec 13 14:53 input.tar.gz
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas 146399602 Dec 13 19:06 HITS.pool.root.1
[2025-12-13 19:08:02] -rw-------. 1 boincer umatlas   2539520 Dec 13 19:08 result.tar.gz
19:08:03 (2964219): run_atlas exited; CPU time 43560.799356
19:08:03 (2964219): called boinc_finish(0)

</stderr_txt>
]]>

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