Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:49:14 (20126): wrapper (7.7.26015): starting
14:49:14 (20126): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 14:49:14] Arguments: --nthreads 12
[2025-12-13 14:49:14] Threads: 12
[2025-12-13 14:49:14] Checking for CVMFS
[2025-12-13 14:49:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 14:49:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 14:49:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 14:49:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 14:49:15] 2.11.2.0 2925 312603 95492 153971 2 57 15857850 20275201 1 130560 1 138167516 99.966 18170603 15168 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 14:49:15] CVMFS is ok
[2025-12-13 14:49:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 14:49:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 14:49:15] Further information can be found at the LHC@home message board.
[2025-12-13 14:49:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 14:49:15] Checking for apptainer binary...
[2025-12-13 14:49:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 14:49:15] Running /usr/bin/apptainer --version
[2025-12-13 14:49:15] apptainer version 1.3.2-1.el7
[2025-12-13 14:49:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 14:49:16] c-205-9.aglt2.org
[2025-12-13 14:49:16] apptainer works
[2025-12-13 14:49:16] Set ATHENA_PROC_NUMBER=12
[2025-12-13 14:49:16] Set ATHENA_CORE_NUMBER=12
[2025-12-13 14:49:16] Starting ATLAS job with PandaID=6929309981
[2025-12-13 14:49:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 16:08:46]  *** The last 200 lines of the pilot log: ***
[2025-12-13 16:08:46]  replicas=None
[2025-12-13 16:08:46]  scope=mc23_13p6TeV
[2025-12-13 16:08:46]  status=None
[2025-12-13 16:08:46]  status_code=0
[2025-12-13 16:08:46]  storage_token=
[2025-12-13 16:08:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929309981/log.47886831._004754.job.log.tgz.1
[2025-12-13 16:08:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/12/log.47886831._004754.job.log.tgz.1
[2025-12-13 16:08:46]  workdir=None
[2025-12-13 16:08:46] ]
[2025-12-13 16:08:46] 2025-12-13 21:07:52,453 | INFO     | transferring file log.47886831._004754.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929309981/log.47886831._004754.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 16:08:46] 2025-12-13 21:07:52,453 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929309981/log.47886831._004754.job.log.tgz.1 /tmp/boinchome/slots/0/log.47886831._004754.job
[2025-12-13 16:08:46] 2025-12-13 21:07:52,476 | INFO     | adding to output.list: log.47886831._004754.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/12/log.47886831._004754.job.log.tg
[2025-12-13 16:08:46] 2025-12-13 21:07:52,477 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 16:08:46] 2025-12-13 21:07:52,478 | INFO     | summary of transferred files:
[2025-12-13 16:08:46] 2025-12-13 21:07:52,478 | INFO     |  -- lfn=log.47886831._004754.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 16:08:46] 2025-12-13 21:07:52,478 | INFO     | stage-out finished correctly
[2025-12-13 16:08:46] 2025-12-13 21:07:52,899 | INFO     | monitor loop #351: job 0:6929309981 is in state 'finished'
[2025-12-13 16:08:46] 2025-12-13 21:07:52,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:08:46] 2025-12-13 21:07:54,214 | INFO     | time since job start (4701s) is within the limit (174528.0s)
[2025-12-13 16:08:46] 2025-12-13 21:07:54,777 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 16:08:46] 2025-12-13 21:07:55,403 | INFO     | monitor loop #352: job 0:6929309981 is in state 'finished'
[2025-12-13 16:08:46] 2025-12-13 21:07:55,403 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:08:46] 2025-12-13 21:07:56,220 | INFO     | time since job start (4703s) is within the limit (174528.0s)
[2025-12-13 16:08:46] 2025-12-13 21:07:56,513 | INFO     | job 6929309981 has state=finished
[2025-12-13 16:08:46] 2025-12-13 21:07:56,513 | INFO     | preparing for final server update for job 6929309981 in state='finished'
[2025-12-13 16:08:46] 2025-12-13 21:07:56,514 | INFO     | this job has now completed (state=finished)
[2025-12-13 16:08:46] 2025-12-13 21:07:56,514 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 16:08:46] 2025-12-13 21:07:56,514 | INFO     | log transfer has been attempted: DONE
[2025-12-13 16:08:46] 2025-12-13 21:07:56,514 | INFO     | job 6929309981 has finished - writing final server update
[2025-12-13 16:08:46] 2025-12-13 21:07:56,515 | INFO     | total number of processed events: 400 (read)
[2025-12-13 16:08:46] 2025-12-13 21:07:56,516 | INFO     | executing command: lscpu
[2025-12-13 16:08:46] 2025-12-13 21:07:56,542 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 16:08:46] 2025-12-13 21:07:57,906 | INFO     | monitor loop #353: job 0:6929309981 is in state 'finished'
[2025-12-13 16:08:46] 2025-12-13 21:07:57,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:08:46] 2025-12-13 21:07:58,225 | INFO     | time since job start (4705s) is within the limit (174528.0s)
[2025-12-13 16:08:46] 2025-12-13 21:07:59,348 | INFO     | PID=24165 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 16:08:46] 2025-12-13 21:08:00,348 | INFO     | time since job start (4707s) is within the limit (174528.0s)
[2025-12-13 16:08:46] 2025-12-13 21:08:00,409 | INFO     | monitor loop #354: job 0:6929309981 is in state 'finished'
[2025-12-13 16:08:46] 2025-12-13 21:08:00,409 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:08:46] 2025-12-13 21:08:01,349 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 16:08:46] 2025-12-13 21:08:01,353 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-13 16:08:46] 2025-12-13 21:08:01,356 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929309981/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 16:08:46] 2025-12-13 21:08:01,357 | INFO     | extracted standard info from prmon json
[2025-12-13 16:08:46] 2025-12-13 21:08:01,357 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 16:08:46] 2025-12-13 21:08:01,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 16:08:46] 2025-12-13 21:08:01,358 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 16:08:46] 2025-12-13 21:08:01,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 16:08:46] 2025-12-13 21:08:01,360 | INFO     | fitting pss+swap vs Time
[2025-12-13 16:08:46] 2025-12-13 21:08:01,360 | INFO     | sum of square deviations: 106336877.5
[2025-12-13 16:08:46] 2025-12-13 21:08:01,360 | INFO     | sum of deviations: -8427475313.0
[2025-12-13 16:08:46] 2025-12-13 21:08:01,360 | INFO     | mean x: 1765657811.5
[2025-12-13 16:08:46] 2025-12-13 21:08:01,361 | INFO     | mean y: 2734552.4
[2025-12-13 16:08:46] 2025-12-13 21:08:01,361 | INFO     | intersect: 139935728330.79883
[2025-12-13 16:08:46] 2025-12-13 21:08:01,361 | INFO     | chi2: 0.06299723524194369
[2025-12-13 16:08:46] 2025-12-13 21:08:01,361 | INFO     | current memory leak: -79.25 B/s (using 70 data points, chi2=0.06)
[2025-12-13 16:08:46] 2025-12-13 21:08:01,361 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | ..............................
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | . Timing measurements:
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | . get job = 0 s
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | . initial setup = 2 s
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | . payload setup = 7 s
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | . stage-in = 0 s
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | . payload execution = 4670 s
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | . stage-out = 0 s
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | . log creation = 0 s
[2025-12-13 16:08:46] 2025-12-13 21:08:01,362 | INFO     | ..............................
[2025-12-13 16:08:46] 2025-12-13 21:08:01,537 | INFO     | 
[2025-12-13 16:08:46] 2025-12-13 21:08:01,537 | INFO     | job summary report
[2025-12-13 16:08:46] 2025-12-13 21:08:01,537 | INFO     | --------------------------------------------------
[2025-12-13 16:08:46] 2025-12-13 21:08:01,537 | INFO     | PanDA job id: 6929309981
[2025-12-13 16:08:46] 2025-12-13 21:08:01,537 | INFO     | task id: 47886831
[2025-12-13 16:08:46] 2025-12-13 21:08:01,538 | INFO     | errors: (none)
[2025-12-13 16:08:46] 2025-12-13 21:08:01,538 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 16:08:46] 2025-12-13 21:08:01,538 | INFO     | pilot state: finished 
[2025-12-13 16:08:46] 2025-12-13 21:08:01,538 | INFO     | transexitcode: 0
[2025-12-13 16:08:46] 2025-12-13 21:08:01,538 | INFO     | exeerrorcode: 0
[2025-12-13 16:08:46] 2025-12-13 21:08:01,538 | INFO     | exeerrordiag: 
[2025-12-13 16:08:46] 2025-12-13 21:08:01,538 | INFO     | exitcode: 0
[2025-12-13 16:08:46] 2025-12-13 21:08:01,538 | INFO     | exitmsg: OK
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | cpuconsumptiontime: 51440 s
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | nevents: 400
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | neventsw: 0
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | pid: 30531
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | pgrp: 30531
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | corecount: 12
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | event service: False
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | sizes: {0: 2283763, 1: 2284018, 6: 2284280, 12: 2284308, 4681: 2310458, 4683: 2319456, 4685: 2319640, 4692: 2319834}
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | --------------------------------------------------
[2025-12-13 16:08:46] 2025-12-13 21:08:01,539 | INFO     | 
[2025-12-13 16:08:46] 2025-12-13 21:08:01,540 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 16:08:46] 2025-12-13 21:08:01,566 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,566 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,566 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,566 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,566 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,567 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,567 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,567 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,567 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,567 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,567 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,568 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 16:08:46] 2025-12-13 21:08:01,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,569 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 16:08:46] 2025-12-13 21:08:01,569 | INFO     | job 6929309981 has completed (purged errors)
[2025-12-13 16:08:46] 2025-12-13 21:08:01,569 | INFO     | overall cleanup function is called
[2025-12-13 16:08:46] 2025-12-13 21:08:02,576 | INFO     | --- collectZombieJob: --- 10, [30531]
[2025-12-13 16:08:46] 2025-12-13 21:08:02,577 | INFO     | zombie collector waiting for pid 30531
[2025-12-13 16:08:46] 2025-12-13 21:08:02,577 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 16:08:46] 2025-12-13 21:08:02,577 | INFO     | collected zombie processes
[2025-12-13 16:08:46] 2025-12-13 21:08:02,577 | INFO     | will attempt to kill all subprocesses of pid=30531
[2025-12-13 16:08:46] 2025-12-13 21:08:02,668 | INFO     | process IDs to be killed: [30531] (in reverse order)
[2025-12-13 16:08:46] 2025-12-13 21:08:02,721 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 16:08:46] 2025-12-13 21:08:02,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 16:08:46] 2025-12-13 21:08:02,724 | INFO     | did not find any defunct processes belonging to 30531
[2025-12-13 16:08:46] 2025-12-13 21:08:02,727 | INFO     | did not find any defunct processes belonging to 30531
[2025-12-13 16:08:46] 2025-12-13 21:08:02,728 | INFO     | ready for new job
[2025-12-13 16:08:46] 2025-12-13 21:08:02,728 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 16:08:46] 2025-12-13 21:08:02,729 | INFO     | ***************************************
[2025-12-13 16:08:46] 2025-12-13 21:08:02,729 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 16:08:46] 2025-12-13 21:08:02,729 | INFO     | ***************************************
[2025-12-13 16:08:46] 2025-12-13 21:08:02,729 | INFO     | 
[2025-12-13 16:08:46] 2025-12-13 21:08:02,730 | INFO     | architecture information:
[2025-12-13 16:08:46] 2025-12-13 21:08:02,730 | INFO     | executing command: cat /etc/os-release
[2025-12-13 16:08:46] 2025-12-13 21:08:02,745 | INFO     | cat /etc/os-release:
[2025-12-13 16:08:46] NAME="CentOS Linux"
[2025-12-13 16:08:46] VERSION="7 (Core)"
[2025-12-13 16:08:46] ID="centos"
[2025-12-13 16:08:46] ID_LIKE="rhel fedora"
[2025-12-13 16:08:46] VERSION_ID="7"
[2025-12-13 16:08:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 16:08:46] ANSI_COLOR="0;31"
[2025-12-13 16:08:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 16:08:46] HOME_URL="https://www.centos.org/"
[2025-12-13 16:08:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 16:08:46] 
[2025-12-13 16:08:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 16:08:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 16:08:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 16:08:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 16:08:46] 
[2025-12-13 16:08:46] 2025-12-13 21:08:02,760 | INFO     | ***************************************
[2025-12-13 16:08:46] 2025-12-13 21:08:03,263 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 16:08:46] 2025-12-13 21:08:03,280 | INFO     | sufficient remaining disk space (29455548416 B)
[2025-12-13 16:08:46] 2025-12-13 21:08:03,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 16:08:46] 2025-12-13 21:08:03,281 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 16:08:46] 2025-12-13 21:08:03,281 | INFO     | update_server=False
[2025-12-13 16:08:46] 2025-12-13 21:08:03,281 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 16:08:46] 2025-12-13 21:08:03,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:08:46] 2025-12-13 21:08:03,282 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 16:08:46] 2025-12-13 21:08:03,920 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:08:46] 2025-12-13 21:08:03,920 | INFO     | aborting loop
[2025-12-13 16:08:46] 2025-12-13 21:08:04,033 | INFO     | all data control threads have been joined
[2025-12-13 16:08:46] 2025-12-13 21:08:04,055 | INFO     | all job control threads have been joined
[2025-12-13 16:08:46] 2025-12-13 21:08:04,287 | INFO     | [job] retrieve thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:04,288 | INFO     | [job] queue monitor thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:04,365 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:04,468 | INFO     | [payload] validate_post thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:04,634 | INFO     | all payload control threads have been joined
[2025-12-13 16:08:46] 2025-12-13 21:08:04,926 | INFO     | [job] job monitor thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:04,941 | INFO     | [payload] failed_post thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,038 | INFO     | [data] copytool_in thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,039 | INFO     | [data] control thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,061 | INFO     | [job] control thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,117 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,158 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,288 | INFO     | [data] copytool_out thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 16:08:46] 2025-12-13 21:08:05,533 | INFO     | [job] validate thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,640 | INFO     | [payload] control thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:05,648 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:09,371 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 16:08:46] 2025-12-13 21:08:33,554 | INFO     | PID=24165 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 16:08:46] 2025-12-13 21:08:33,554 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 16:08:46] 2025-12-13 21:08:33,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 16:08:46] 2025-12-13 21:08:33,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 16:08:46] 2025-12-13 21:08:40,104 | INFO     | [monitor] cgroup control has ended
[2025-12-13 16:08:46] 2025-12-13 21:08:41,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140288492984128)>', '<ExcThread(monitor, started 140287313700608)>']
[2025-12-13 16:08:46] 2025-12-13 21:08:42,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 16:08:46] 2025-12-13 21:08:42,601 | INFO     | [monitor] control thread has ended
[2025-12-13 16:08:46] 2025-12-13 21:08:46,658 | INFO     | all workflow threads have been joined
[2025-12-13 16:08:46] 2025-12-13 21:08:46,658 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 16:08:46] 2025-12-13 21:08:46,659 | INFO     | traces error code: 0
[2025-12-13 16:08:46] 2025-12-13 21:08:46,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 16:08:46] 2025-12-13 21:08:46,745 [wrapper] ==== pilot stdout END ====
[2025-12-13 16:08:46] 2025-12-13 21:08:46,749 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 16:08:46] 2025-12-13 21:08:46,753 [wrapper] pilotpid: 24165
[2025-12-13 16:08:46] 2025-12-13 21:08:46,758 [wrapper] Pilot exit status: 0
[2025-12-13 16:08:46] 2025-12-13 21:08:46,775 [wrapper] pandaids: 6929309981
[2025-12-13 16:08:46] 2025-12-13 21:08:46,822 [wrapper] cleanup supervisor_pilot 26142 24166
[2025-12-13 16:08:46] 2025-12-13 21:08:46,825 [wrapper] Test setup, not cleaning
[2025-12-13 16:08:46] 2025-12-13 21:08:46,829 [wrapper] apfmon messages muted
[2025-12-13 16:08:46] 2025-12-13 21:08:46,833 [wrapper] ==== wrapper stdout END ====
[2025-12-13 16:08:46] 2025-12-13 21:08:46,837 [wrapper] ==== wrapper stderr END ====
[2025-12-13 16:08:46]  *** Error codes and diagnostics ***
[2025-12-13 16:08:46]     "exeErrorCode": 0,
[2025-12-13 16:08:46]     "exeErrorDiag": "",
[2025-12-13 16:08:46]     "pilotErrorCode": 0,
[2025-12-13 16:08:46]     "pilotErrorDiag": "",
[2025-12-13 16:08:46]  *** Listing of results directory ***
[2025-12-13 16:08:46] total 336664
[2025-12-13 16:08:46] -rwx------ 1 boincer umatlas     36322 Dec 13 08:45 runpilot2-wrapper.sh
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 08:45 pilot3.tar.gz
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 08:45 queuedata.json
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas       100 Dec 13 14:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 16:08:46] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 14:49 run_atlas
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas       105 Dec 13 14:49 job.xml
[2025-12-13 16:08:46] -rw-r--r-- 2 boincer umatlas 192744859 Dec 13 14:49 EVNT.47886829._000190.pool.root.1
[2025-12-13 16:08:46] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 14:49 start_atlas.sh
[2025-12-13 16:08:46] drwxrwx--x 2 boincer umatlas      4096 Dec 13 14:49 shared
[2025-12-13 16:08:46] -rw-r--r-- 2 boincer umatlas    592413 Dec 13 14:49 input.tar.gz
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas         0 Dec 13 14:49 boinc_lockfile
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas      2538 Dec 13 14:49 pandaJob.out
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas        57 Dec 13 14:49 setup.sh.local
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas    991736 Dec 13 14:49 agis_schedconf.cvmfs.json
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas   1516240 Dec 13 14:49 agis_ddmendpoints.agis.ALL.json
[2025-12-13 16:08:46] drwx------ 5 boincer umatlas      4096 Dec 13 14:49 pilot3
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 16:01 init_data.xml
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas 145925143 Dec 13 16:07 HITS.47886831._004754.pool.root.1
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas       530 Dec 13 16:07 boinc_task_state.xml
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas        95 Dec 13 16:07 pilot_heartbeat.json
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas      1045 Dec 13 16:07 memory_monitor_summary.json
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas    396427 Dec 13 16:07 log.47886831._004754.job.log.tgz.1
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas      7845 Dec 13 16:08 heartbeat.json
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 16:08 boinc_mmap_file
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas        27 Dec 13 16:08 wrapper_checkpoint.txt
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas      4746 Dec 13 16:08 pilotlog.txt
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas    680965 Dec 13 16:08 log.47886831._004754.job.log.1
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas       357 Dec 13 16:08 output.list
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas       620 Dec 13 16:08 runtime_log
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas   1095680 Dec 13 16:08 result.tar.gz
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 16:08 runtime_log.err
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas       658 Dec 13 16:08 ft9NDmQ7eo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuaTKDmRE4Ean.diag
[2025-12-13 16:08:46] -rw-r--r-- 1 boincer umatlas     22010 Dec 13 16:08 stderr.txt
[2025-12-13 16:08:46] HITS file was successfully produced:
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas 145925143 Dec 13 16:07 shared/HITS.pool.root.1
[2025-12-13 16:08:46]  *** Contents of shared directory: ***
[2025-12-13 16:08:46] total 332408
[2025-12-13 16:08:46] -rw-r--r-- 2 boincer umatlas 192744859 Dec 13 14:49 ATLAS.root_0
[2025-12-13 16:08:46] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 14:49 start_atlas.sh
[2025-12-13 16:08:46] -rw-r--r-- 2 boincer umatlas    592413 Dec 13 14:49 input.tar.gz
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas 145925143 Dec 13 16:07 HITS.pool.root.1
[2025-12-13 16:08:46] -rw------- 1 boincer umatlas   1095680 Dec 13 16:08 result.tar.gz
16:08:48 (20126): run_atlas exited; CPU time 51429.563979
16:08:48 (20126): called boinc_finish(0)

</stderr_txt>
]]>

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