Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:40:44 (28069): wrapper (7.7.26015): starting
02:40:44 (28069): wrapper: running run_atlas (--nthreads 8)
[2025-12-14 02:40:44] Arguments: --nthreads 8
[2025-12-14 02:40:44] Threads: 8
[2025-12-14 02:40:44] Checking for CVMFS
[2025-12-14 02:40:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 02:40:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 02:40:44] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 02:40:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 02:40:44] 2.11.2.0 1415 109461 145208 153979 2 202 23628756 25165824 3729 130560 313 33726486 99.825 24999180 1831 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-14 02:40:44] CVMFS is ok
[2025-12-14 02:40:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 02:40:44] Checking for apptainer binary...
[2025-12-14 02:40:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 02:40:44] Running /usr/bin/apptainer --version
[2025-12-14 02:40:44] apptainer version 1.3.2-1.el7
[2025-12-14 02:40:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 02:40:46] cg-vwn377.simple-grid.lan
[2025-12-14 02:40:46] apptainer works
[2025-12-14 02:40:46] Set ATHENA_PROC_NUMBER=8
[2025-12-14 02:40:46] Set ATHENA_CORE_NUMBER=8
[2025-12-14 02:40:46] Starting ATLAS job with PandaID=6929275703
[2025-12-14 02:40:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 08:16:49]  *** The last 200 lines of the pilot log: ***
[2025-12-14 08:16:49] 2025-12-14 07:15:58,511 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 08:16:49] 2025-12-14 07:15:58,512 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-14 08:16:49] 2025-12-14 07:15:58,514 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6929275703/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 08:16:49] 2025-12-14 07:15:58,515 | INFO     | extracted standard info from prmon json
[2025-12-14 08:16:49] 2025-12-14 07:15:58,516 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 08:16:49] 2025-12-14 07:15:58,516 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 08:16:49] 2025-12-14 07:15:58,516 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 08:16:49] 2025-12-14 07:15:58,516 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 08:16:49] 2025-12-14 07:15:58,524 | INFO     | fitting pss+swap vs Time
[2025-12-14 08:16:49] 2025-12-14 07:15:58,525 | INFO     | sum of square deviations: 10842205148.0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,537 | INFO     | sum of deviations: -15742346616.000011
[2025-12-14 08:16:49] 2025-12-14 07:15:58,537 | INFO     | mean x: 1765686466.0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,537 | INFO     | mean y: 2502359.7125382265
[2025-12-14 08:16:49] 2025-12-14 07:15:58,537 | INFO     | intersect: 2566191939.7865233
[2025-12-14 08:16:49] 2025-12-14 07:15:58,538 | INFO     | chi2: 2.50422412265056
[2025-12-14 08:16:49] 2025-12-14 07:15:58,539 | INFO     | sum of square deviations: 10352419220.5
[2025-12-14 08:16:49] 2025-12-14 07:15:58,542 | INFO     | sum of deviations: 5967576106.499998
[2025-12-14 08:16:49] 2025-12-14 07:15:58,543 | INFO     | mean x: 1765686313.5
[2025-12-14 08:16:49] 2025-12-14 07:15:58,543 | INFO     | mean y: 2509035.4378881985
[2025-12-14 08:16:49] 2025-12-14 07:15:58,543 | INFO     | intersect: -1015307885.5723641
[2025-12-14 08:16:49] 2025-12-14 07:15:58,544 | INFO     | chi2: 1.7341780577284553
[2025-12-14 08:16:49] 2025-12-14 07:15:58,544 | INFO     | current chi2=1.7341780577284553 (change=30.749886080765833 %)
[2025-12-14 08:16:49] 2025-12-14 07:15:58,544 | INFO     | sum of square deviations: 9877610318.0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,548 | INFO     | sum of deviations: 5825745464.000006
[2025-12-14 08:16:49] 2025-12-14 07:15:58,548 | INFO     | mean x: 1765686161.0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,548 | INFO     | mean y: 2508989.4889589907
[2025-12-14 08:16:49] 2025-12-14 07:15:58,549 | INFO     | intersect: -1038880355.9226863
[2025-12-14 08:16:49] 2025-12-14 07:15:58,549 | INFO     | chi2: 1.7342750967297282
[2025-12-14 08:16:49] 2025-12-14 07:15:58,549 | INFO     | current chi2=1.7342750967297282 (change=-0.005595676916821331 %)
[2025-12-14 08:16:49] 2025-12-14 07:15:58,549 | INFO     | right removable region: 316
[2025-12-14 08:16:49] 2025-12-14 07:15:58,550 | INFO     | sum of square deviations: 10352419220.5
[2025-12-14 08:16:49] 2025-12-14 07:15:58,554 | INFO     | sum of deviations: -67543511174.99999
[2025-12-14 08:16:49] 2025-12-14 07:15:58,554 | INFO     | mean x: 1765686618.5
[2025-12-14 08:16:49] 2025-12-14 07:15:58,554 | INFO     | mean y: 2518378.9192546583
[2025-12-14 08:16:49] 2025-12-14 07:15:58,554 | INFO     | intersect: 11522596083.272755
[2025-12-14 08:16:49] 2025-12-14 07:15:58,555 | INFO     | chi2: 0.9889678342494483
[2025-12-14 08:16:49] 2025-12-14 07:15:58,555 | INFO     | current chi2=0.9889678342494483 (change=60.50801422667036 %)
[2025-12-14 08:16:49] 2025-12-14 07:15:58,556 | INFO     | sum of square deviations: 9877610318.0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,559 | INFO     | sum of deviations: -64339765738.0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,560 | INFO     | mean x: 1765686771.0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,560 | INFO     | mean y: 2517333.0788643532
[2025-12-14 08:16:49] 2025-12-14 07:15:58,560 | INFO     | intersect: 11503666857.656178
[2025-12-14 08:16:49] 2025-12-14 07:15:58,561 | INFO     | chi2: 0.9748427648250786
[2025-12-14 08:16:49] 2025-12-14 07:15:58,561 | INFO     | current chi2=0.9748427648250786 (change=1.4282637852513789 %)
[2025-12-14 08:16:49] 2025-12-14 07:15:58,561 | INFO     | left removable region: 20
[2025-12-14 08:16:49] 2025-12-14 07:15:58,561 | INFO     | sum of square deviations: 8041713570.0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,565 | INFO     | sum of deviations: -21872960655.5
[2025-12-14 08:16:49] 2025-12-14 07:15:58,565 | INFO     | mean x: 1765686740.5
[2025-12-14 08:16:49] 2025-12-14 07:15:58,565 | INFO     | mean y: 2517456.239864865
[2025-12-14 08:16:49] 2025-12-14 07:15:58,565 | INFO     | intersect: 4805075551.441276
[2025-12-14 08:16:49] 2025-12-14 07:15:58,566 | INFO     | chi2: 0.13849783705847857
[2025-12-14 08:16:49] 2025-12-14 07:15:58,566 | INFO     | current memory leak: -2.72 B/s (using 296 data points, chi2=0.14)
[2025-12-14 08:16:49] 2025-12-14 07:15:58,567 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2025-12-14 08:16:49] 2025-12-14 07:15:58,567 | INFO     | ..............................
[2025-12-14 08:16:49] 2025-12-14 07:15:58,567 | INFO     | . Timing measurements:
[2025-12-14 08:16:49] 2025-12-14 07:15:58,568 | INFO     | . get job = 0 s
[2025-12-14 08:16:49] 2025-12-14 07:15:58,568 | INFO     | . initial setup = 1 s
[2025-12-14 08:16:49] 2025-12-14 07:15:58,568 | INFO     | . payload setup = 11 s
[2025-12-14 08:16:49] 2025-12-14 07:15:58,568 | INFO     | . stage-in = 0 s
[2025-12-14 08:16:49] 2025-12-14 07:15:58,568 | INFO     | . payload execution = 19951 s
[2025-12-14 08:16:49] 2025-12-14 07:15:58,568 | INFO     | . stage-out = 3 s
[2025-12-14 08:16:49] 2025-12-14 07:15:58,568 | INFO     | . log creation = 1 s
[2025-12-14 08:16:49] 2025-12-14 07:15:58,568 | INFO     | ..............................
[2025-12-14 08:16:49] 2025-12-14 07:15:58,695 | INFO     | 
[2025-12-14 08:16:49] 2025-12-14 07:15:58,695 | INFO     | job summary report
[2025-12-14 08:16:49] 2025-12-14 07:15:58,695 | INFO     | --------------------------------------------------
[2025-12-14 08:16:49] 2025-12-14 07:15:58,695 | INFO     | PanDA job id: 6929275703
[2025-12-14 08:16:49] 2025-12-14 07:15:58,695 | INFO     | task id: 47898836
[2025-12-14 08:16:49] 2025-12-14 07:15:58,695 | INFO     | errors: (none)
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | pilot state: finished 
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | transexitcode: 0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | exeerrorcode: 0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | exeerrordiag: 
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | exitcode: 0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | exitmsg: OK
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | cpuconsumptiontime: 76828 s
[2025-12-14 08:16:49] 2025-12-14 07:15:58,696 | INFO     | nevents: 400
[2025-12-14 08:16:49] 2025-12-14 07:15:58,697 | INFO     | neventsw: 0
[2025-12-14 08:16:49] 2025-12-14 07:15:58,697 | INFO     | pid: 6668
[2025-12-14 08:16:49] 2025-12-14 07:15:58,697 | INFO     | pgrp: 6668
[2025-12-14 08:16:49] 2025-12-14 07:15:58,697 | INFO     | corecount: 8
[2025-12-14 08:16:49] 2025-12-14 07:15:58,697 | INFO     | event service: False
[2025-12-14 08:16:49] 2025-12-14 07:15:58,697 | INFO     | sizes: {0: 2283996, 1: 2283996, 7: 2284286, 12: 2284314, 19967: 2316852, 19971: 2325850, 19972: 2326034, 20075: 2326228}
[2025-12-14 08:16:49] 2025-12-14 07:15:58,697 | INFO     | --------------------------------------------------
[2025-12-14 08:16:49] 2025-12-14 07:15:58,697 | INFO     | 
[2025-12-14 08:16:49] 2025-12-14 07:15:58,698 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-12-14 08:16:49] 2025-12-14 07:15:59,280 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,280 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,280 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,280 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,282 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,282 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 08:16:49] 2025-12-14 07:15:59,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 08:16:49] 2025-12-14 07:15:59,282 | INFO     | job 6929275703 has completed (purged errors)
[2025-12-14 08:16:49] 2025-12-14 07:15:59,283 | INFO     | overall cleanup function is called
[2025-12-14 08:16:49] 2025-12-14 07:16:00,291 | INFO     | --- collectZombieJob: --- 10, [6668]
[2025-12-14 08:16:49] 2025-12-14 07:16:00,291 | INFO     | zombie collector waiting for pid 6668
[2025-12-14 08:16:49] 2025-12-14 07:16:00,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 08:16:49] 2025-12-14 07:16:00,291 | INFO     | collected zombie processes
[2025-12-14 08:16:49] 2025-12-14 07:16:00,292 | INFO     | will attempt to kill all subprocesses of pid=6668
[2025-12-14 08:16:49] 2025-12-14 07:16:00,402 | INFO     | process IDs to be killed: [6668] (in reverse order)
[2025-12-14 08:16:49] 2025-12-14 07:16:00,538 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 08:16:49] 2025-12-14 07:16:00,539 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 08:16:49] 2025-12-14 07:16:00,542 | INFO     | did not find any defunct processes belonging to 6668
[2025-12-14 08:16:49] 2025-12-14 07:16:00,545 | INFO     | did not find any defunct processes belonging to 6668
[2025-12-14 08:16:49] 2025-12-14 07:16:00,545 | INFO     | ready for new job
[2025-12-14 08:16:49] 2025-12-14 07:16:00,545 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 08:16:49] 2025-12-14 07:16:00,547 | INFO     | ***************************************
[2025-12-14 08:16:49] 2025-12-14 07:16:00,547 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 08:16:49] 2025-12-14 07:16:00,548 | INFO     | ***************************************
[2025-12-14 08:16:49] 2025-12-14 07:16:00,548 | INFO     | 
[2025-12-14 08:16:49] 2025-12-14 07:16:00,548 | INFO     | pilot is running in a VM
[2025-12-14 08:16:49] 2025-12-14 07:16:00,548 | INFO     | architecture information:
[2025-12-14 08:16:49] 2025-12-14 07:16:00,549 | INFO     | executing command: cat /etc/os-release
[2025-12-14 08:16:49] 2025-12-14 07:16:00,677 | INFO     | cat /etc/os-release:
[2025-12-14 08:16:49] NAME="CentOS Linux"
[2025-12-14 08:16:49] VERSION="7 (Core)"
[2025-12-14 08:16:49] ID="centos"
[2025-12-14 08:16:49] ID_LIKE="rhel fedora"
[2025-12-14 08:16:49] VERSION_ID="7"
[2025-12-14 08:16:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 08:16:49] ANSI_COLOR="0;31"
[2025-12-14 08:16:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 08:16:49] HOME_URL="https://www.centos.org/"
[2025-12-14 08:16:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 08:16:49] 
[2025-12-14 08:16:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 08:16:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 08:16:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 08:16:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 08:16:49] 
[2025-12-14 08:16:49] 2025-12-14 07:16:00,678 | INFO     | ***************************************
[2025-12-14 08:16:49] 2025-12-14 07:16:01,181 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-12-14 08:16:49] 2025-12-14 07:16:01,368 | INFO     | sufficient remaining disk space (497428725760 B)
[2025-12-14 08:16:49] 2025-12-14 07:16:01,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 08:16:49] 2025-12-14 07:16:01,369 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 08:16:49] 2025-12-14 07:16:01,369 | INFO     | update_server=False
[2025-12-14 08:16:49] 2025-12-14 07:16:01,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 08:16:49] 2025-12-14 07:16:01,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 08:16:49] 2025-12-14 07:16:01,370 | INFO     | aborting loop
[2025-12-14 08:16:49] 2025-12-14 07:16:01,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 08:16:49] 2025-12-14 07:16:01,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 08:16:49] 2025-12-14 07:16:01,621 | INFO     | all job control threads have been joined
[2025-12-14 08:16:49] 2025-12-14 07:16:01,885 | INFO     | all payload control threads have been joined
[2025-12-14 08:16:49] 2025-12-14 07:16:02,219 | INFO     | all data control threads have been joined
[2025-12-14 08:16:49] 2025-12-14 07:16:02,376 | INFO     | [job] job monitor thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:02,378 | INFO     | [job] retrieve thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:02,599 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:02,627 | INFO     | [job] control thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:02,803 | INFO     | [payload] validate_post thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:02,892 | INFO     | [payload] control thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:03,003 | INFO     | [data] copytool_in thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:03,017 | INFO     | [job] validate thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:03,042 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:03,078 | INFO     | [payload] failed_post thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:03,225 | INFO     | [data] control thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:03,336 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:03,381 | INFO     | [data] copytool_out thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:03,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 08:16:49] 2025-12-14 07:16:04,715 | INFO     | [job] queue monitor thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:05,382 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:11,990 | INFO     | job.realtimelogging is not enabled
[2025-12-14 08:16:49] 2025-12-14 07:16:12,996 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 08:16:49] 2025-12-14 07:16:31,708 | INFO     | PID=31818 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 08:16:49] 2025-12-14 07:16:31,708 | INFO     | .. there are 9 such processes running
[2025-12-14 08:16:49] 2025-12-14 07:16:31,709 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 08:16:49] 2025-12-14 07:16:31,709 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 08:16:49] 2025-12-14 07:16:31,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 08:16:49] 2025-12-14 07:16:39,933 | INFO     | [monitor] cgroup control has ended
[2025-12-14 08:16:49] 2025-12-14 07:16:41,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140560717965120)>', '<ExcThread(monitor, started 140560429991680)>']
[2025-12-14 08:16:49] 2025-12-14 07:16:41,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 08:16:49] 2025-12-14 07:16:41,771 | INFO     | [monitor] control thread has ended
[2025-12-14 08:16:49] 2025-12-14 07:16:46,765 | INFO     | all workflow threads have been joined
[2025-12-14 08:16:49] 2025-12-14 07:16:46,765 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 08:16:49] 2025-12-14 07:16:46,765 | INFO     | traces error code: 0
[2025-12-14 08:16:49] 2025-12-14 07:16:46,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 08:16:49] 2025-12-14 07:16:46,994 [wrapper] ==== pilot stdout END ====
[2025-12-14 08:16:49] 2025-12-14 07:16:46,999 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 08:16:49] 2025-12-14 07:16:47,007 [wrapper] pilotpid: 31818
[2025-12-14 08:16:49] 2025-12-14 07:16:47,014 [wrapper] Pilot exit status: 0
[2025-12-14 08:16:49] 2025-12-14 07:16:47,486 [wrapper] pandaids: 6929275703
[2025-12-14 08:16:49] 2025-12-14 07:16:47,630 [wrapper] cleanup supervisor_pilot 20455 31819
[2025-12-14 08:16:49] 2025-12-14 07:16:47,637 [wrapper] Test setup, not cleaning
[2025-12-14 08:16:49] 2025-12-14 07:16:47,687 [wrapper] apfmon messages muted
[2025-12-14 08:16:49] 2025-12-14 07:16:47,702 [wrapper] ==== wrapper stdout END ====
[2025-12-14 08:16:49] 2025-12-14 07:16:47,716 [wrapper] ==== wrapper stderr END ====
[2025-12-14 08:16:49]  *** Error codes and diagnostics ***
[2025-12-14 08:16:49]     "exeErrorCode": 0,
[2025-12-14 08:16:49]     "exeErrorDiag": "",
[2025-12-14 08:16:49]     "pilotErrorCode": 0,
[2025-12-14 08:16:49]     "pilotErrorDiag": "",
[2025-12-14 08:16:49]  *** Listing of results directory ***
[2025-12-14 08:16:49] total 417352
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc    579449 Dec 13 11:01 pilot3.tar.gz
[2025-12-14 08:16:49] -rwx------. 1 boinc boinc     36322 Dec 13 11:03 runpilot2-wrapper.sh
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc      5112 Dec 13 11:05 queuedata.json
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc       100 Dec 14 02:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 08:16:49] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 02:40 run_atlas
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc       105 Dec 14 02:40 job.xml
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc      6392 Dec 14 02:40 init_data.xml
[2025-12-14 08:16:49] -rw-r--r--. 2 boinc boinc 212580670 Dec 14 02:40 EVNT.47898833._000035.pool.root.1
[2025-12-14 08:16:49] -rw-r--r--. 2 boinc boinc     15847 Dec 14 02:40 start_atlas.sh
[2025-12-14 08:16:49] drwxrwx--x. 2 boinc boinc        68 Dec 14 02:40 shared
[2025-12-14 08:16:49] -rw-r--r--. 2 boinc boinc    592400 Dec 14 02:40 input.tar.gz
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc         0 Dec 14 02:40 boinc_lockfile
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc      2544 Dec 14 02:40 pandaJob.out
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc    991744 Dec 14 02:41 agis_schedconf.cvmfs.json
[2025-12-14 08:16:49] drwx------. 5 boinc boinc      4096 Dec 14 02:41 pilot3
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc 204486151 Dec 14 08:13 HITS.47898836._000851.pool.root.1
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc       531 Dec 14 08:13 boinc_task_state.xml
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc      1018 Dec 14 08:14 memory_monitor_summary.json
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc   1516240 Dec 14 08:14 agis_ddmendpoints.agis.ALL.json
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc    516148 Dec 14 08:14 log.47898836._000851.job.log.tgz.1
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc      7766 Dec 14 08:15 heartbeat.json
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc        95 Dec 14 08:16 pilot_heartbeat.json
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc      8192 Dec 14 08:16 boinc_mmap_file
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc        28 Dec 14 08:16 wrapper_checkpoint.txt
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc      4956 Dec 14 08:16 pilotlog.txt
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc   2684671 Dec 14 08:16 log.47898836._000851.job.log.1
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc       357 Dec 14 08:16 output.list
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc       620 Dec 14 08:16 runtime_log
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc   3215360 Dec 14 08:16 result.tar.gz
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc      8817 Dec 14 08:16 runtime_log.err
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc       657 Dec 14 08:16 8o1KDmdebo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHwSKDmhUCq4m.diag
[2025-12-14 08:16:49] -rw-r--r--. 1 boinc boinc     20712 Dec 14 08:16 stderr.txt
[2025-12-14 08:16:49] HITS file was successfully produced:
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc 204486151 Dec 14 08:13 shared/HITS.pool.root.1
[2025-12-14 08:16:49]  *** Contents of shared directory: ***
[2025-12-14 08:16:49] total 411032
[2025-12-14 08:16:49] -rw-r--r--. 2 boinc boinc 212580670 Dec 14 02:40 ATLAS.root_0
[2025-12-14 08:16:49] -rw-r--r--. 2 boinc boinc     15847 Dec 14 02:40 start_atlas.sh
[2025-12-14 08:16:49] -rw-r--r--. 2 boinc boinc    592400 Dec 14 02:40 input.tar.gz
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc 204486151 Dec 14 08:13 HITS.pool.root.1
[2025-12-14 08:16:49] -rw-------. 1 boinc boinc   3215360 Dec 14 08:16 result.tar.gz
08:16:51 (28069): run_atlas exited; CPU time 77107.615063
08:16:51 (28069): called boinc_finish(0)

</stderr_txt>
]]>

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