Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:27:49 (3847157): wrapper (7.7.26015): starting
00:27:49 (3847157): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 00:27:49] Arguments: --nthreads 4
[2025-12-14 00:27:49] Threads: 4
[2025-12-14 00:27:49] Checking for CVMFS
[2025-12-14 00:27:49] No cvmfs_config command found, will try listing directly
[2025-12-14 00:27:49] CVMFS is ok
[2025-12-14 00:27:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 00:27:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 00:27:49] Further information can be found at the LHC@home message board.
[2025-12-14 00:27:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 00:27:49] Checking for apptainer binary...
[2025-12-14 00:27:49] which: no apptainer in ((null))
[2025-12-14 00:27:49] apptainer is not installed, using version from CVMFS
[2025-12-14 00:27:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 00:27:49] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-12-14 00:27:49] apptainer works
[2025-12-14 00:27:49] Set ATHENA_PROC_NUMBER=4
[2025-12-14 00:27:49] Set ATHENA_CORE_NUMBER=4
[2025-12-14 00:27:49] Starting ATLAS job with PandaID=6929288737
[2025-12-14 00:27:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 04:32:43]  *** The last 200 lines of the pilot log: ***
[2025-12-14 04:32:43] 2025-12-14 03:30:37,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 04:32:43] 2025-12-14 03:30:39,845 | INFO     | time since job start (14554s) is within the limit (174528.0s)
[2025-12-14 04:32:43] 2025-12-14 03:30:40,496 | INFO     | monitor loop #956: job 0:6929288737 is in state 'finished'
[2025-12-14 04:32:43] 2025-12-14 03:30:40,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 04:32:43] 2025-12-14 03:30:41,853 | INFO     | time since job start (14556s) is within the limit (174528.0s)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,000 | INFO     | monitor loop #957: job 0:6929288737 is in state 'finished'
[2025-12-14 04:32:43] 2025-12-14 03:30:43,000 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,412 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 04:32:43] 2025-12-14 03:30:43,435 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2666.144617187501
[2025-12-14 04:32:43] 2025-12-14 03:30:43,460 | INFO     | using path: /var/lib/boinc/var/slot88/slots/0/PanDA_Pilot-6929288737/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,461 | INFO     | extracted standard info from prmon json
[2025-12-14 04:32:43] 2025-12-14 03:30:43,461 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 04:32:43] 2025-12-14 03:30:43,462 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 04:32:43] 2025-12-14 03:30:43,462 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 04:32:43] 2025-12-14 03:30:43,462 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 04:32:43] 2025-12-14 03:30:43,467 | INFO     | fitting pss+swap vs Time
[2025-12-14 04:32:43] 2025-12-14 03:30:43,467 | INFO     | sum of square deviations: 4180243959.5
[2025-12-14 04:32:43] 2025-12-14 03:30:43,469 | INFO     | sum of deviations: 23804123787.50001
[2025-12-14 04:32:43] 2025-12-14 03:30:43,469 | INFO     | mean x: 1765675750.5
[2025-12-14 04:32:43] 2025-12-14 03:30:43,469 | INFO     | mean y: 2336609.5756302522
[2025-12-14 04:32:43] 2025-12-14 03:30:43,469 | INFO     | intersect: -10052187609.751572
[2025-12-14 04:32:43] 2025-12-14 03:30:43,470 | INFO     | chi2: 1.3072301027198137
[2025-12-14 04:32:43] 2025-12-14 03:30:43,470 | INFO     | sum of square deviations: 3922276332.0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,472 | INFO     | sum of deviations: 23155594387.999996
[2025-12-14 04:32:43] 2025-12-14 03:30:43,472 | INFO     | mean x: 1765675598.0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,472 | INFO     | mean y: 2336226.137339056
[2025-12-14 04:32:43] 2025-12-14 03:30:43,472 | INFO     | intersect: -10421525966.975815
[2025-12-14 04:32:43] 2025-12-14 03:30:43,473 | INFO     | chi2: 1.307803140115469
[2025-12-14 04:32:43] 2025-12-14 03:30:43,473 | INFO     | current chi2=1.307803140115469 (change=-0.0438360005987575 %)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,473 | INFO     | right removable region: 232
[2025-12-14 04:32:43] 2025-12-14 03:30:43,474 | INFO     | sum of square deviations: 3922276332.0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,475 | INFO     | sum of deviations: -5786885353.000001
[2025-12-14 04:32:43] 2025-12-14 03:30:43,475 | INFO     | mean x: 1765675903.0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,476 | INFO     | mean y: 2353908.188841202
[2025-12-14 04:32:43] 2025-12-14 03:30:43,476 | INFO     | intersect: 2607413612.3850603
[2025-12-14 04:32:43] 2025-12-14 03:30:43,476 | INFO     | chi2: 0.02083112182056485
[2025-12-14 04:32:43] 2025-12-14 03:30:43,476 | INFO     | current chi2=0.02083112182056485 (change=98.40646862574357 %)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,477 | INFO     | sum of square deviations: 3675146117.0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,478 | INFO     | sum of deviations: -5986049407.499999
[2025-12-14 04:32:43] 2025-12-14 03:30:43,478 | INFO     | mean x: 1765676055.5
[2025-12-14 04:32:43] 2025-12-14 03:30:43,479 | INFO     | mean y: 2354019.057017544
[2025-12-14 04:32:43] 2025-12-14 03:30:43,479 | INFO     | intersect: 2878273443.5860395
[2025-12-14 04:32:43] 2025-12-14 03:30:43,479 | INFO     | chi2: 0.017738462200149636
[2025-12-14 04:32:43] 2025-12-14 03:30:43,479 | INFO     | current chi2=0.017738462200149636 (change=14.846342156004702 %)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,479 | INFO     | left removable region: 20
[2025-12-14 04:32:43] 2025-12-14 03:30:43,480 | INFO     | sum of square deviations: 2954447953.0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,481 | INFO     | sum of deviations: -2520793493.499998
[2025-12-14 04:32:43] 2025-12-14 03:30:43,481 | INFO     | mean x: 1765676177.5
[2025-12-14 04:32:43] 2025-12-14 03:30:43,481 | INFO     | mean y: 2351576.0518867923
[2025-12-14 04:32:43] 2025-12-14 03:30:43,482 | INFO     | intersect: 1508861452.2371883
[2025-12-14 04:32:43] 2025-12-14 03:30:43,482 | INFO     | chi2: 0.014038672643701936
[2025-12-14 04:32:43] 2025-12-14 03:30:43,482 | INFO     | current memory leak: -0.85 B/s (using 212 data points, chi2=0.01)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,482 | INFO     | could have reported an average CPU frequency of 2604 MHz (12 samples)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | ..............................
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | . Timing measurements:
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | . get job = 0 s
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | . initial setup = 1 s
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | . payload setup = 9 s
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | . stage-in = 0 s
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | . payload execution = 14516 s
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | . stage-out = 1 s
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | . log creation = 0 s
[2025-12-14 04:32:43] 2025-12-14 03:30:43,483 | INFO     | ..............................
[2025-12-14 04:32:43] 2025-12-14 03:30:43,845 | INFO     | 
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | job summary report
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | --------------------------------------------------
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | PanDA job id: 6929288737
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | task id: 47898782
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | errors: (none)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | pilot state: finished 
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | transexitcode: 0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | exeerrorcode: 0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | exeerrordiag: 
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | exitcode: 0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,846 | INFO     | exitmsg: OK
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | cpuconsumptiontime: 55583 s
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | nevents: 400
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | neventsw: 0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | pid: 3871173
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | pgrp: 3871173
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | corecount: 4
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | event service: False
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | sizes: {0: 2283764, 1: 2284019, 9: 2284281, 12: 2284309, 14530: 2315472, 14532: 2324676, 14540: 2324814}
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | --------------------------------------------------
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | 
[2025-12-14 04:32:43] 2025-12-14 03:30:43,847 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/0
[2025-12-14 04:32:43] 2025-12-14 03:30:43,861 | INFO     | time since job start (14558s) is within the limit (174528.0s)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,880 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,880 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,880 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,880 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,880 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,880 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,880 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,881 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,882 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,882 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 04:32:43] 2025-12-14 03:30:43,882 | INFO     | job 6929288737 has completed (purged errors)
[2025-12-14 04:32:43] 2025-12-14 03:30:43,882 | INFO     | overall cleanup function is called
[2025-12-14 04:32:43] 2025-12-14 03:30:44,890 | INFO     | --- collectZombieJob: --- 10, [3871173]
[2025-12-14 04:32:43] 2025-12-14 03:30:44,893 | INFO     | zombie collector waiting for pid 3871173
[2025-12-14 04:32:43] 2025-12-14 03:30:44,893 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 04:32:43] 2025-12-14 03:30:44,893 | INFO     | collected zombie processes
[2025-12-14 04:32:43] 2025-12-14 03:30:44,894 | INFO     | will attempt to kill all subprocesses of pid=3871173
[2025-12-14 04:32:43] 2025-12-14 03:30:45,776 | INFO     | process IDs to be killed: [3871173] (in reverse order)
[2025-12-14 04:32:43] 2025-12-14 03:30:46,106 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 04:32:43] 2025-12-14 03:30:46,106 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 04:32:43] 2025-12-14 03:30:46,143 | INFO     | did not find any defunct processes belonging to 3871173
[2025-12-14 04:32:43] 2025-12-14 03:30:46,180 | INFO     | did not find any defunct processes belonging to 3871173
[2025-12-14 04:32:43] 2025-12-14 03:30:46,181 | INFO     | ready for new job
[2025-12-14 04:32:43] 2025-12-14 03:30:46,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 04:32:43] 2025-12-14 03:30:46,183 | INFO     | ***************************************
[2025-12-14 04:32:43] 2025-12-14 03:30:46,183 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 04:32:43] 2025-12-14 03:30:46,183 | INFO     | ***************************************
[2025-12-14 04:32:43] 2025-12-14 03:30:46,183 | INFO     | 
[2025-12-14 04:32:43] 2025-12-14 03:30:46,191 | INFO     | architecture information:
[2025-12-14 04:32:43] 2025-12-14 03:30:46,192 | INFO     | executing command: cat /etc/os-release
[2025-12-14 04:32:43] 2025-12-14 03:30:46,219 | INFO     | cat /etc/os-release:
[2025-12-14 04:32:43] NAME="CentOS Linux"
[2025-12-14 04:32:43] VERSION="7 (Core)"
[2025-12-14 04:32:43] ID="centos"
[2025-12-14 04:32:43] ID_LIKE="rhel fedora"
[2025-12-14 04:32:43] VERSION_ID="7"
[2025-12-14 04:32:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 04:32:43] ANSI_COLOR="0;31"
[2025-12-14 04:32:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 04:32:43] HOME_URL="https://www.centos.org/"
[2025-12-14 04:32:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 04:32:43] 
[2025-12-14 04:32:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 04:32:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 04:32:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 04:32:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 04:32:43] 
[2025-12-14 04:32:43] 2025-12-14 03:30:46,219 | INFO     | ***************************************
[2025-12-14 04:32:43] 2025-12-14 03:30:46,722 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/0
[2025-12-14 04:32:43] 2025-12-14 03:30:46,753 | INFO     | sufficient remaining disk space (319198068736 B)
[2025-12-14 04:32:43] 2025-12-14 03:30:46,754 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 04:32:43] 2025-12-14 03:30:46,754 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 04:32:43] 2025-12-14 03:30:46,755 | INFO     | update_server=False
[2025-12-14 04:32:43] 2025-12-14 03:30:46,755 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 04:32:43] 2025-12-14 03:30:46,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 04:32:43] 2025-12-14 03:30:46,755 | INFO     | aborting loop
[2025-12-14 04:32:43] 2025-12-14 03:30:46,812 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 04:32:43] 2025-12-14 03:30:46,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 04:32:43] 2025-12-14 03:30:47,259 | INFO     | all data control threads have been joined
[2025-12-14 04:32:43] 2025-12-14 03:30:47,357 | INFO     | all job control threads have been joined
[2025-12-14 04:32:43] 2025-12-14 03:30:47,759 | INFO     | [job] retrieve thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:47,761 | INFO     | [job] job monitor thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:47,954 | INFO     | all payload control threads have been joined
[2025-12-14 04:32:43] 2025-12-14 03:30:48,212 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,213 | INFO     | [data] copytool_in thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,260 | INFO     | [data] control thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,362 | INFO     | [job] control thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,542 | INFO     | [payload] failed_post thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 04:32:43] 2025-12-14 03:30:48,722 | INFO     | [job] validate thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,724 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,817 | INFO     | [data] copytool_out thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,907 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:48,960 | INFO     | [payload] control thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:49,189 | INFO     | [payload] validate_post thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:49,595 | INFO     | [job] queue monitor thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:50,911 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:30:57,709 | INFO     | job.realtimelogging is not enabled
[2025-12-14 04:32:43] 2025-12-14 03:30:58,714 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 04:32:43] 2025-12-14 03:31:18,126 | INFO     | PID=3855259 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-12-14 04:32:43] 2025-12-14 03:31:18,129 | INFO     | .. there are 9 such processes running
[2025-12-14 04:32:43] 2025-12-14 03:31:18,129 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 04:32:43] 2025-12-14 03:31:18,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 04:32:43] 2025-12-14 03:31:18,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 04:32:43] 2025-12-14 03:31:29,145 | INFO     | [monitor] cgroup control has ended
[2025-12-14 04:32:43] 2025-12-14 03:31:30,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23346223351616)>', '<ExcThread(monitor, started 23345976260352)>']
[2025-12-14 04:32:43] 2025-12-14 03:31:31,194 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 04:32:43] 2025-12-14 03:31:31,195 | INFO     | [monitor] control thread has ended
[2025-12-14 04:32:43] 2025-12-14 03:31:35,909 | INFO     | all workflow threads have been joined
[2025-12-14 04:32:43] 2025-12-14 03:31:35,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 04:32:43] 2025-12-14 03:31:35,910 | INFO     | traces error code: 0
[2025-12-14 04:32:43] 2025-12-14 03:31:35,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 04:32:43] 2025-12-14 03:31:36,111 [wrapper] ==== pilot stdout END ====
[2025-12-14 04:32:43] 2025-12-14 03:31:36,115 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 04:32:43] 2025-12-14 03:31:36,119 [wrapper] pilotpid: 3855259
[2025-12-14 04:32:43] 2025-12-14 03:31:36,123 [wrapper] Pilot exit status: 0
[2025-12-14 04:32:43] 2025-12-14 03:31:36,136 [wrapper] pandaids: 6929288737
[2025-12-14 04:32:43] 2025-12-14 03:31:36,376 [wrapper] cleanup supervisor_pilot  322215 3855260
[2025-12-14 04:32:43] 2025-12-14 03:31:36,382 [wrapper] Test setup, not cleaning
[2025-12-14 04:32:43] 2025-12-14 03:31:36,386 [wrapper] apfmon messages muted
[2025-12-14 04:32:43] 2025-12-14 03:31:36,390 [wrapper] ==== wrapper stdout END ====
[2025-12-14 04:32:43] 2025-12-14 03:31:36,393 [wrapper] ==== wrapper stderr END ====
[2025-12-14 04:32:43]  *** Error codes and diagnostics ***
[2025-12-14 04:32:43]     "exeErrorCode": 0,
[2025-12-14 04:32:43]     "exeErrorDiag": "",
[2025-12-14 04:32:43]     "pilotErrorCode": 0,
[2025-12-14 04:32:43]     "pilotErrorDiag": "",
[2025-12-14 04:32:43]  *** Listing of results directory ***
[2025-12-14 04:32:43] total 414816
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc    579449 Dec 13 11:01 pilot3.tar.gz
[2025-12-14 04:32:43] -rwx------. 1 boinc boinc     36322 Dec 13 11:03 runpilot2-wrapper.sh
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc      5112 Dec 13 11:04 queuedata.json
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc       100 Dec 14 00:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 04:32:43] -rwxr-xr-x. 1 boinc boinc      7986 Dec 14 00:27 run_atlas
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc       105 Dec 14 00:27 job.xml
[2025-12-14 04:32:43] -rw-r--r--. 2 boinc boinc 214948500 Dec 14 00:27 EVNT.47898779._000111.pool.root.1
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc      6682 Dec 14 00:27 init_data.xml
[2025-12-14 04:32:43] -rw-r--r--. 2 boinc boinc     15847 Dec 14 00:27 start_atlas.sh
[2025-12-14 04:32:43] drwxrwx--x. 2 boinc boinc      4096 Dec 14 00:27 shared
[2025-12-14 04:32:43] -rw-r--r--. 2 boinc boinc    592398 Dec 14 00:27 input.tar.gz
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc         0 Dec 14 00:27 boinc_lockfile
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc      2522 Dec 14 00:27 pandaJob.out
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc    991736 Dec 14 00:28 agis_schedconf.cvmfs.json
[2025-12-14 04:32:43] drwx------. 5 boinc boinc      4096 Dec 14 00:28 pilot3
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc 201164026 Dec 14 04:29 HITS.47898782._002589.pool.root.1
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc        95 Dec 14 04:30 pilot_heartbeat.json
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc       529 Dec 14 04:30 boinc_task_state.xml
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc      1031 Dec 14 04:30 memory_monitor_summary.json
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc   1516240 Dec 14 04:30 agis_ddmendpoints.agis.ALL.json
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc    401690 Dec 14 04:30 log.47898782._002589.job.log.tgz.1
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc      7790 Dec 14 04:30 heartbeat.json
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc      4906 Dec 14 04:31 pilotlog.txt
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc   1969477 Dec 14 04:31 log.47898782._002589.job.log.1
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc       357 Dec 14 04:31 output.list
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc       620 Dec 14 04:31 runtime_log
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc   2385920 Dec 14 04:31 result.tar.gz
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc      9206 Dec 14 04:31 runtime_log.err
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc       666 Dec 14 04:31 iI1NDmKebo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrmOKDmZaP1Un.diag
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc        26 Dec 14 04:32 wrapper_checkpoint.txt
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc      8192 Dec 14 04:32 boinc_mmap_file
[2025-12-14 04:32:43] -rw-r--r--. 1 boinc boinc     21108 Dec 14 04:32 stderr.txt
[2025-12-14 04:32:43] HITS file was successfully produced:
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc 201164026 Dec 14 04:29 shared/HITS.pool.root.1
[2025-12-14 04:32:43]  *** Contents of shared directory: ***
[2025-12-14 04:32:43] total 409300
[2025-12-14 04:32:43] -rw-r--r--. 2 boinc boinc 214948500 Dec 14 00:27 ATLAS.root_0
[2025-12-14 04:32:43] -rw-r--r--. 2 boinc boinc     15847 Dec 14 00:27 start_atlas.sh
[2025-12-14 04:32:43] -rw-r--r--. 2 boinc boinc    592398 Dec 14 00:27 input.tar.gz
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc 201164026 Dec 14 04:29 HITS.pool.root.1
[2025-12-14 04:32:43] -rw-------. 1 boinc boinc   2385920 Dec 14 04:31 result.tar.gz
04:32:44 (3847157): run_atlas exited; CPU time 56720.682898
04:32:44 (3847157): called boinc_finish(0)

</stderr_txt>
]]>

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