Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:57:41 (2750889): wrapper (7.7.26015): starting
16:57:41 (2750889): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 16:57:41] Arguments: --nthreads 8
[2025-12-13 16:57:41] Threads: 8
[2025-12-13 16:57:41] Checking for CVMFS
[2025-12-13 16:57:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 16:57:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 16:57:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 16:57:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 16:57:45] 2.13.3.0 12022 54964 363624 153973 1 115 29955266 32935936 41766 16776704 0 114565463 99.518 137139138 12164 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 16:57:45] CVMFS is ok
[2025-12-13 16:57:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 16:57:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 16:57:45] Further information can be found at the LHC@home message board.
[2025-12-13 16:57:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 16:57:45] Checking for apptainer binary...
[2025-12-13 16:57:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 16:57:45] Running /usr/bin/apptainer --version
[2025-12-13 16:57:47] apptainer version 1.4.5-2.el9
[2025-12-13 16:57:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 16:57:49] c6-12-25-4.aglt2.org
[2025-12-13 16:57:49] apptainer works
[2025-12-13 16:57:49] Set ATHENA_PROC_NUMBER=8
[2025-12-13 16:57:49] Set ATHENA_CORE_NUMBER=8
[2025-12-13 16:57:49] Starting ATLAS job with PandaID=6929263491
[2025-12-13 16:57:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 19:48:24]  *** The last 200 lines of the pilot log: ***
[2025-12-14 19:48:24] 2025-12-15 00:47:16,746 | INFO     | monitor loop #2395: job 0:6929263491 is in state 'finished'
[2025-12-14 19:48:24] 2025-12-15 00:47:16,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 19:48:24] 2025-12-15 00:47:17,936 | INFO     | time since job start (96465s) is within the limit (174528.0s)
[2025-12-14 19:48:24] 2025-12-15 00:47:19,085 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-14 19:48:24] 2025-12-15 00:47:19,273 | INFO     | monitor loop #2396: job 0:6929263491 is in state 'finished'
[2025-12-14 19:48:24] 2025-12-15 00:47:19,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 19:48:24] 2025-12-15 00:47:19,402 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9990729166669
[2025-12-14 19:48:24] 2025-12-15 00:47:19,522 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6929263491/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 19:48:24] 2025-12-15 00:47:19,528 | INFO     | extracted standard info from prmon json
[2025-12-14 19:48:24] 2025-12-15 00:47:19,529 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 19:48:24] 2025-12-15 00:47:19,529 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 19:48:24] 2025-12-15 00:47:19,530 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 19:48:24] 2025-12-15 00:47:19,530 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 19:48:24] 2025-12-15 00:47:19,744 | INFO     | fitting pss+swap vs Time
[2025-12-14 19:48:24] 2025-12-15 00:47:19,754 | INFO     | sum of square deviations: 1216110578576.1523
[2025-12-14 19:48:24] 2025-12-15 00:47:20,351 | INFO     | sum of deviations: 2185251477384.4832
[2025-12-14 19:48:24] 2025-12-15 00:47:20,351 | INFO     | mean x: 1765711459.103361
[2025-12-14 19:48:24] 2025-12-15 00:47:20,352 | INFO     | mean y: 2451582.757767914
[2025-12-14 19:48:24] 2025-12-15 00:47:20,352 | INFO     | intersect: -3170387830.5445743
[2025-12-14 19:48:24] 2025-12-15 00:47:20,383 | INFO     | chi2: 8.101920707949517
[2025-12-14 19:48:24] 2025-12-15 00:47:20,397 | INFO     | sum of square deviations: 1204580226629.47
[2025-12-14 19:48:24] 2025-12-15 00:47:21,066 | INFO     | sum of deviations: 2384327373996.196
[2025-12-14 19:48:24] 2025-12-15 00:47:21,067 | INFO     | mean x: 1765711306.605598
[2025-12-14 19:48:24] 2025-12-15 00:47:21,067 | INFO     | mean y: 2454210.5229007634
[2025-12-14 19:48:24] 2025-12-15 00:47:21,067 | INFO     | intersect: -3492567299.745778
[2025-12-14 19:48:24] 2025-12-15 00:47:21,129 | INFO     | chi2: 6.582264387513929
[2025-12-14 19:48:24] 2025-12-15 00:47:21,130 | INFO     | current chi2=6.582264387513929 (change=18.756741459398857 %)
[2025-12-14 19:48:24] 2025-12-15 00:47:21,130 | INFO     | right removable region: 1571
[2025-12-14 19:48:24] 2025-12-15 00:47:21,154 | INFO     | sum of square deviations: 1204579837878.099
[2025-12-14 19:48:24] 2025-12-15 00:47:21,706 | INFO     | sum of deviations: 1752403329834.2812
[2025-12-14 19:48:24] 2025-12-15 00:47:21,715 | INFO     | mean x: 1765711611.6036897
[2025-12-14 19:48:24] 2025-12-15 00:47:21,715 | INFO     | mean y: 2457305.295801527
[2025-12-14 19:48:24] 2025-12-15 00:47:21,716 | INFO     | intersect: -2566271483.284911
[2025-12-14 19:48:24] 2025-12-15 00:47:21,725 | INFO     | chi2: 5.271018552725177
[2025-12-14 19:48:24] 2025-12-15 00:47:21,742 | INFO     | current chi2=5.271018552725177 (change=34.94112392937503 %)
[2025-12-14 19:48:24] 2025-12-15 00:47:21,751 | INFO     | sum of square deviations: 1193122310961.2515
[2025-12-14 19:48:24] 2025-12-15 00:47:21,835 | INFO     | monitor loop #2397: job 0:6929263491 is in state 'finished'
[2025-12-14 19:48:24] 2025-12-15 00:47:21,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 19:48:24] 2025-12-15 00:47:22,246 | INFO     | sum of deviations: 1481842675479.5793
[2025-12-14 19:48:24] 2025-12-15 00:47:22,247 | INFO     | mean x: 1765711764.1033823
[2025-12-14 19:48:24] 2025-12-15 00:47:22,247 | INFO     | mean y: 2460905.663050415
[2025-12-14 19:48:24] 2025-12-15 00:47:22,247 | INFO     | intersect: -2190530559.3416624
[2025-12-14 19:48:24] 2025-12-15 00:47:22,377 | INFO     | chi2: 4.239877775424044
[2025-12-14 19:48:24] 2025-12-15 00:47:22,378 | INFO     | current chi2=4.239877775424044 (change=19.562457748664567 %)
[2025-12-14 19:48:24] 2025-12-15 00:47:22,378 | INFO     | left removable region: 20
[2025-12-14 19:48:24] 2025-12-15 00:47:22,453 | INFO     | sum of square deviations: 1156946583884.1458
[2025-12-14 19:48:24] 2025-12-15 00:47:23,238 | INFO     | sum of deviations: 1293969531113.482
[2025-12-14 19:48:24] 2025-12-15 00:47:23,239 | INFO     | mean x: 1765711886.1102514
[2025-12-14 19:48:24] 2025-12-15 00:47:23,239 | INFO     | mean y: 2468787.944551902
[2025-12-14 19:48:24] 2025-12-15 00:47:23,239 | INFO     | intersect: -1972365152.6865194
[2025-12-14 19:48:24] 2025-12-15 00:47:23,303 | INFO     | chi2: 1.673375306930523
[2025-12-14 19:48:24] 2025-12-15 00:47:23,304 | INFO     | current memory leak: 1.12 B/s (using 1551 data points, chi2=1.67)
[2025-12-14 19:48:24] 2025-12-15 00:47:23,312 | INFO     | could have reported an average CPU frequency of 999 MHz (55 samples)
[2025-12-14 19:48:24] 2025-12-15 00:47:23,313 | INFO     | ..............................
[2025-12-14 19:48:24] 2025-12-15 00:47:23,313 | INFO     | . Timing measurements:
[2025-12-14 19:48:24] 2025-12-15 00:47:23,313 | INFO     | . get job = 0 s
[2025-12-14 19:48:24] 2025-12-15 00:47:23,318 | INFO     | . initial setup = 11 s
[2025-12-14 19:48:24] 2025-12-15 00:47:23,318 | INFO     | . payload setup = 57 s
[2025-12-14 19:48:24] 2025-12-15 00:47:23,318 | INFO     | . stage-in = 1 s
[2025-12-14 19:48:24] 2025-12-15 00:47:23,318 | INFO     | . payload execution = 96201 s
[2025-12-14 19:48:24] 2025-12-15 00:47:23,319 | INFO     | . stage-out = 25 s
[2025-12-14 19:48:24] 2025-12-15 00:47:23,319 | INFO     | . log creation = 8 s
[2025-12-14 19:48:24] 2025-12-15 00:47:23,319 | INFO     | ..............................
[2025-12-14 19:48:24] 2025-12-15 00:47:27,395 | INFO     | 
[2025-12-14 19:48:24] 2025-12-15 00:47:27,395 | INFO     | job summary report
[2025-12-14 19:48:24] 2025-12-15 00:47:27,396 | INFO     | --------------------------------------------------
[2025-12-14 19:48:24] 2025-12-15 00:47:27,396 | INFO     | PanDA job id: 6929263491
[2025-12-14 19:48:24] 2025-12-15 00:47:27,396 | INFO     | task id: 47886933
[2025-12-14 19:48:24] 2025-12-15 00:47:27,396 | INFO     | errors: (none)
[2025-12-14 19:48:24] 2025-12-15 00:47:27,396 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 19:48:24] 2025-12-15 00:47:27,397 | INFO     | pilot state: finished 
[2025-12-14 19:48:24] 2025-12-15 00:47:27,397 | INFO     | transexitcode: 0
[2025-12-14 19:48:24] 2025-12-15 00:47:27,397 | INFO     | exeerrorcode: 0
[2025-12-14 19:48:24] 2025-12-15 00:47:27,397 | INFO     | exeerrordiag: 
[2025-12-14 19:48:24] 2025-12-15 00:47:27,397 | INFO     | exitcode: 0
[2025-12-14 19:48:24] 2025-12-15 00:47:27,398 | INFO     | exitmsg: OK
[2025-12-14 19:48:24] 2025-12-15 00:47:27,398 | INFO     | cpuconsumptiontime: 118444 s
[2025-12-14 19:48:24] 2025-12-15 00:47:27,398 | INFO     | nevents: 400
[2025-12-14 19:48:24] 2025-12-15 00:47:27,398 | INFO     | neventsw: 0
[2025-12-14 19:48:24] 2025-12-15 00:47:27,398 | INFO     | pid: 2768253
[2025-12-14 19:48:24] 2025-12-15 00:47:27,495 | INFO     | pgrp: 2768253
[2025-12-14 19:48:24] 2025-12-15 00:47:27,495 | INFO     | corecount: 8
[2025-12-14 19:48:24] 2025-12-15 00:47:27,496 | INFO     | event service: False
[2025-12-14 19:48:24] 2025-12-15 00:47:27,496 | INFO     | sizes: {0: 2283076, 1: 2283677, 2: 2283761, 7: 2283817, 10: 2283988, 11: 2284016, 12: 2284172, 25: 2284200, 37: 2284228, 49: 2284256, 57: 2284546, 63: 2284854, 962
[2025-12-14 19:48:24] 2025-12-15 00:47:27,496 | INFO     | --------------------------------------------------
[2025-12-14 19:48:24] 2025-12-15 00:47:27,496 | INFO     | 
[2025-12-14 19:48:24] 2025-12-15 00:47:27,497 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-14 19:48:24] 2025-12-15 00:47:27,910 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,911 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,911 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,912 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,912 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,913 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,913 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,913 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,913 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,967 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,967 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,967 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,968 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,968 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,968 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 19:48:24] 2025-12-15 00:47:27,968 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,968 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 19:48:24] 2025-12-15 00:47:27,969 | INFO     | job 6929263491 has completed (purged errors)
[2025-12-14 19:48:24] 2025-12-15 00:47:27,969 | INFO     | overall cleanup function is called
[2025-12-14 19:48:24] 2025-12-15 00:47:29,208 | INFO     | --- collectZombieJob: --- 10, [2768253]
[2025-12-14 19:48:24] 2025-12-15 00:47:29,208 | INFO     | zombie collector waiting for pid 2768253
[2025-12-14 19:48:24] 2025-12-15 00:47:29,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 19:48:24] 2025-12-15 00:47:29,209 | INFO     | collected zombie processes
[2025-12-14 19:48:24] 2025-12-15 00:47:29,209 | INFO     | will attempt to kill all subprocesses of pid=2768253
[2025-12-14 19:48:24] 2025-12-15 00:47:32,553 | INFO     | PID=2756897 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 19:48:24] 2025-12-15 00:47:32,554 | INFO     | .. there are 45 such processes running
[2025-12-14 19:48:24] 2025-12-15 00:47:36,779 | INFO     | process IDs to be killed: [2768253] (in reverse order)
[2025-12-14 19:48:24] 2025-12-15 00:47:37,903 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 19:48:24] 2025-12-15 00:47:37,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 19:48:24] 2025-12-15 00:47:38,137 | INFO     | did not find any defunct processes belonging to 2768253
[2025-12-14 19:48:24] 2025-12-15 00:47:38,428 | INFO     | did not find any defunct processes belonging to 2768253
[2025-12-14 19:48:24] 2025-12-15 00:47:38,429 | INFO     | ready for new job
[2025-12-14 19:48:24] 2025-12-15 00:47:38,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 19:48:24] 2025-12-15 00:47:38,466 | INFO     | ***************************************
[2025-12-14 19:48:24] 2025-12-15 00:47:38,467 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 19:48:24] 2025-12-15 00:47:38,467 | INFO     | ***************************************
[2025-12-14 19:48:24] 2025-12-15 00:47:38,467 | INFO     | 
[2025-12-14 19:48:24] 2025-12-15 00:47:38,506 | INFO     | architecture information:
[2025-12-14 19:48:24] 2025-12-15 00:47:38,528 | INFO     | executing command: cat /etc/os-release
[2025-12-14 19:48:24] 2025-12-15 00:47:38,698 | INFO     | cat /etc/os-release:
[2025-12-14 19:48:24] NAME="CentOS Linux"
[2025-12-14 19:48:24] VERSION="7 (Core)"
[2025-12-14 19:48:24] ID="centos"
[2025-12-14 19:48:24] ID_LIKE="rhel fedora"
[2025-12-14 19:48:24] VERSION_ID="7"
[2025-12-14 19:48:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 19:48:24] ANSI_COLOR="0;31"
[2025-12-14 19:48:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 19:48:24] HOME_URL="https://www.centos.org/"
[2025-12-14 19:48:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 19:48:24] 
[2025-12-14 19:48:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 19:48:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 19:48:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 19:48:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 19:48:24] 
[2025-12-14 19:48:24] 2025-12-15 00:47:38,699 | INFO     | ***************************************
[2025-12-14 19:48:24] 2025-12-15 00:47:39,203 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-14 19:48:24] 2025-12-15 00:47:39,348 | INFO     | sufficient remaining disk space (94050975744 B)
[2025-12-14 19:48:24] 2025-12-15 00:47:39,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 19:48:24] 2025-12-15 00:47:39,349 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 19:48:24] 2025-12-15 00:47:39,349 | INFO     | update_server=False
[2025-12-14 19:48:24] 2025-12-15 00:47:39,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 19:48:24] 2025-12-15 00:47:39,350 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 19:48:24] 2025-12-15 00:47:39,350 | INFO     | aborting loop
[2025-12-14 19:48:24] 2025-12-15 00:47:39,474 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 19:48:24] 2025-12-15 00:47:39,687 | INFO     | all job control threads have been joined
[2025-12-14 19:48:24] 2025-12-15 00:47:40,306 | INFO     | all data control threads have been joined
[2025-12-14 19:48:24] 2025-12-15 00:47:40,356 | INFO     | [job] retrieve thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:40,364 | INFO     | [job] job monitor thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:40,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:40,487 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:40,496 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:40,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 19:48:24] 2025-12-15 00:47:40,713 | INFO     | [job] control thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:40,767 | INFO     | all payload control threads have been joined
[2025-12-14 19:48:24] 2025-12-15 00:47:40,921 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:40,932 | INFO     | [job] validate thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:41,028 | INFO     | [payload] failed_post thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:41,287 | INFO     | [data] copytool_in thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:41,312 | INFO     | [data] control thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:41,479 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 19:48:24] 2025-12-15 00:47:41,484 | INFO     | [data] copytool_out thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:41,608 | INFO     | [job] queue monitor thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:41,629 | INFO     | [payload] validate_post thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:41,800 | INFO     | [payload] control thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:45,492 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 19:48:24] 2025-12-15 00:47:52,929 | INFO     | [monitor] cgroup control has ended
[2025-12-14 19:48:24] 2025-12-15 00:47:54,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031317419840)>', '<ExcThread(monitor, started 140030664226560)>']
[2025-12-14 19:48:24] 2025-12-15 00:47:59,144 | INFO     | all workflow threads have been joined
[2025-12-14 19:48:24] 2025-12-15 00:47:59,144 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 19:48:24] 2025-12-15 00:47:59,145 | INFO     | traces error code: 0
[2025-12-14 19:48:24] 2025-12-15 00:47:59,145 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 19:48:24] 2025-12-15 00:48:22,616 | INFO     | PID=2756897 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 19:48:24] 2025-12-15 00:48:22,617 | INFO     | .. there are 45 such processes running
[2025-12-14 19:48:24] 2025-12-15 00:48:22,619 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 19:48:24] 2025-12-15 00:48:22,620 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 19:48:24] 2025-12-15 00:48:22,620 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 19:48:24] 2025-12-15 00:48:22,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 19:48:24] 2025-12-15 00:48:22,620 | INFO     | [monitor] control thread has ended
[2025-12-14 19:48:24] 2025-12-15 00:48:22,948 [wrapper] ==== pilot stdout END ====
[2025-12-14 19:48:24] 2025-12-15 00:48:22,974 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 19:48:24] 2025-12-15 00:48:23,052 [wrapper] pilotpid: 2756897
[2025-12-14 19:48:24] 2025-12-15 00:48:23,078 [wrapper] Pilot exit status: 0
[2025-12-14 19:48:24] 2025-12-15 00:48:23,243 [wrapper] pandaids: 6929263491
[2025-12-14 19:48:24] 2025-12-15 00:48:23,575 [wrapper] cleanup supervisor_pilot 3336083 2756898
[2025-12-14 19:48:24] 2025-12-15 00:48:23,618 [wrapper] Test setup, not cleaning
[2025-12-14 19:48:24] 2025-12-15 00:48:23,645 [wrapper] apfmon messages muted
[2025-12-14 19:48:24] 2025-12-15 00:48:23,674 [wrapper] ==== wrapper stdout END ====
[2025-12-14 19:48:24] 2025-12-15 00:48:23,702 [wrapper] ==== wrapper stderr END ====
[2025-12-14 19:48:24]  *** Error codes and diagnostics ***
[2025-12-14 19:48:24]     "exeErrorCode": 0,
[2025-12-14 19:48:24]     "exeErrorDiag": "",
[2025-12-14 19:48:24]     "pilotErrorCode": 0,
[2025-12-14 19:48:24]     "pilotErrorDiag": "",
[2025-12-14 19:48:24]  *** Listing of results directory ***
[2025-12-14 19:48:24] total 346524
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 05:01 queuedata.json
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 05:01 pilot3.tar.gz
[2025-12-14 19:48:24] -rwx------. 1 boincer umatlas     36322 Dec 13 05:02 runpilot2-wrapper.sh
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas       100 Dec 13 16:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 19:48:24] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 16:57 run_atlas
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas       105 Dec 13 16:57 job.xml
[2025-12-14 19:48:24] -rw-r--r--. 2 boincer umatlas 191296828 Dec 13 16:57 EVNT.47886929._000004.pool.root.1
[2025-12-14 19:48:24] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 16:57 start_atlas.sh
[2025-12-14 19:48:24] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 16:57 shared
[2025-12-14 19:48:24] -rw-r--r--. 2 boincer umatlas    592399 Dec 13 16:57 input.tar.gz
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas         0 Dec 13 16:57 boinc_lockfile
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas      2508 Dec 13 16:57 pandaJob.out
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas        57 Dec 13 16:57 setup.sh.local
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas    991736 Dec 13 16:59 agis_schedconf.cvmfs.json
[2025-12-14 19:48:24] drwx------. 5 boincer umatlas      4096 Dec 13 16:59 pilot3
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas      6880 Dec 14 19:37 init_data.xml
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas 144022663 Dec 14 19:43 HITS.47886933._001745.pool.root.1
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas       532 Dec 14 19:44 boinc_task_state.xml
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas      1040 Dec 14 19:45 memory_monitor_summary.json
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas   1516240 Dec 14 19:46 agis_ddmendpoints.agis.ALL.json
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas   1087271 Dec 14 19:46 log.47886933._001745.job.log.tgz.1
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas      7825 Dec 14 19:47 heartbeat.json
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 19:48 boinc_mmap_file
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas        29 Dec 14 19:48 wrapper_checkpoint.txt
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas        96 Dec 14 19:48 pilot_heartbeat.json
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas       823 Dec 14 19:48 pilotlog.txt
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas   6715677 Dec 14 19:48 log.47886933._001745.job.log.1
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas       357 Dec 14 19:48 output.list
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas       620 Dec 14 19:48 runtime_log
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas   7823360 Dec 14 19:48 result.tar.gz
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas      9353 Dec 14 19:48 runtime_log.err
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas       663 Dec 14 19:48 GyOLDmVdbo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmueOKDmduGPHm.diag
[2025-12-14 19:48:24] -rw-r--r--. 1 boincer umatlas     21538 Dec 14 19:48 stderr.txt
[2025-12-14 19:48:24] HITS file was successfully produced:
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas 144022663 Dec 14 19:43 shared/HITS.pool.root.1
[2025-12-14 19:48:24]  *** Contents of shared directory: ***
[2025-12-14 19:48:24] total 335704
[2025-12-14 19:48:24] -rw-r--r--. 2 boincer umatlas 191296828 Dec 13 16:57 ATLAS.root_0
[2025-12-14 19:48:24] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 16:57 start_atlas.sh
[2025-12-14 19:48:24] -rw-r--r--. 2 boincer umatlas    592399 Dec 13 16:57 input.tar.gz
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas 144022663 Dec 14 19:43 HITS.pool.root.1
[2025-12-14 19:48:24] -rw-------. 1 boincer umatlas   7823360 Dec 14 19:48 result.tar.gz
19:48:25 (2750889): run_atlas exited; CPU time 126473.100676
19:48:25 (2750889): called boinc_finish(0)

</stderr_txt>
]]>

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