Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:32:23 (3532983): wrapper (7.7.26015): starting
18:32:23 (3532983): wrapper: running run_atlas (--nthreads 9)
[2025-12-13 18:32:23] Arguments: --nthreads 9
[2025-12-13 18:32:23] Threads: 9
[2025-12-13 18:32:23] Checking for CVMFS
[2025-12-13 18:32:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 18:32:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 18:32:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 18:32:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 18:32:25] 2.13.3.0 11601 55194 329812 153977 0 254 16804741 32935936 19207 16776704 0 198561938 99.446 285599807 38817 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 18:32:25] CVMFS is ok
[2025-12-13 18:32:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 18:32:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 18:32:25] Further information can be found at the LHC@home message board.
[2025-12-13 18:32:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 18:32:25] Checking for apptainer binary...
[2025-12-13 18:32:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 18:32:25] Running /usr/bin/apptainer --version
[2025-12-13 18:32:25] apptainer version 1.4.5-2.el9
[2025-12-13 18:32:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 18:32:26] c6-6-39-4.aglt2.org
[2025-12-13 18:32:26] apptainer works
[2025-12-13 18:32:26] Set ATHENA_PROC_NUMBER=9
[2025-12-13 18:32:26] Set ATHENA_CORE_NUMBER=9
[2025-12-13 18:32:26] Starting ATLAS job with PandaID=6929261160
[2025-12-13 18:32:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 02:47:32]  *** The last 200 lines of the pilot log: ***
[2025-12-14 02:47:32] 2025-12-14 07:46:41,488 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 02:47:32] 2025-12-14 07:46:41,488 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 02:47:32] 2025-12-14 07:46:41,512 | INFO     | monitor loop #1650: job 0:6929261160 is in state 'finished'
[2025-12-14 02:47:32] 2025-12-14 07:46:41,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 02:47:32] 2025-12-14 07:46:41,513 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 02:47:32] 2025-12-14 07:46:41,513 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 02:47:32] 2025-12-14 07:46:41,556 | INFO     | fitting pss+swap vs Time
[2025-12-14 02:47:32] 2025-12-14 07:46:41,597 | INFO     | sum of square deviations: 35159105564.74999
[2025-12-14 02:47:32] 2025-12-14 07:46:41,876 | INFO     | sum of deviations: -22906359280.204487
[2025-12-14 02:47:32] 2025-12-14 07:46:41,877 | INFO     | mean x: 1765683569.6136363
[2025-12-14 02:47:32] 2025-12-14 07:46:41,877 | INFO     | mean y: 2543395.0309917354
[2025-12-14 02:47:32] 2025-12-14 07:46:41,877 | INFO     | intersect: 1152896385.275256
[2025-12-14 02:47:32] 2025-12-14 07:46:41,877 | INFO     | chi2: 5.1232000928434305
[2025-12-14 02:47:32] 2025-12-14 07:46:41,878 | INFO     | sum of square deviations: 34080905548.48442
[2025-12-14 02:47:32] 2025-12-14 07:46:42,756 | INFO     | sum of deviations: 101786170447.55531
[2025-12-14 02:47:32] 2025-12-14 07:46:42,756 | INFO     | mean x: 1765683417.125261
[2025-12-14 02:47:32] 2025-12-14 07:46:42,756 | INFO     | mean y: 2560992.5574112735
[2025-12-14 02:47:32] 2025-12-14 07:46:42,756 | INFO     | intersect: -5270836247.320975
[2025-12-14 02:47:32] 2025-12-14 07:46:42,757 | INFO     | chi2: 2.2415993432076853
[2025-12-14 02:47:32] 2025-12-14 07:46:42,757 | INFO     | current chi2=2.2415993432076853 (change=56.24610980275857 %)
[2025-12-14 02:47:32] 2025-12-14 07:46:42,757 | INFO     | sum of square deviations: 33024780369.402954
[2025-12-14 02:47:32] 2025-12-14 07:46:42,800 | INFO     | sum of deviations: 100745482122.84818
[2025-12-14 02:47:32] 2025-12-14 07:46:42,800 | INFO     | mean x: 1765683264.6223629
[2025-12-14 02:47:32] 2025-12-14 07:46:42,851 | INFO     | mean y: 2560842.2784810127
[2025-12-14 02:47:32] 2025-12-14 07:46:42,851 | INFO     | intersect: -5383837183.109519
[2025-12-14 02:47:32] 2025-12-14 07:46:42,852 | INFO     | chi2: 2.2419346741871005
[2025-12-14 02:47:32] 2025-12-14 07:46:42,853 | INFO     | current chi2=2.2419346741871005 (change=-0.01495945207297083 %)
[2025-12-14 02:47:32] 2025-12-14 07:46:42,853 | INFO     | right removable region: 473
[2025-12-14 02:47:32] 2025-12-14 07:46:42,854 | INFO     | sum of square deviations: 34080576758.48443
[2025-12-14 02:47:32] 2025-12-14 07:46:43,356 | INFO     | sum of deviations: -124155491923.77666
[2025-12-14 02:47:32] 2025-12-14 07:46:43,356 | INFO     | mean x: 1765683722.125261
[2025-12-14 02:47:32] 2025-12-14 07:46:43,356 | INFO     | mean y: 2557672.2129436326
[2025-12-14 02:47:32] 2025-12-14 07:46:43,356 | INFO     | intersect: 6434940922.525504
[2025-12-14 02:47:32] 2025-12-14 07:46:43,357 | INFO     | chi2: 3.2833693643341295
[2025-12-14 02:47:32] 2025-12-14 07:46:43,357 | INFO     | current chi2=3.2833693643341295 (change=35.91174842222833 %)
[2025-12-14 02:47:32] 2025-12-14 07:46:43,936 | INFO     | sum of square deviations: 33024415344.39023
[2025-12-14 02:47:32] 2025-12-14 07:46:44,033 | INFO     | sum of deviations: -151401841757.82062
[2025-12-14 02:47:32] 2025-12-14 07:46:44,033 | INFO     | mean x: 1765683874.6308017
[2025-12-14 02:47:32] 2025-12-14 07:46:44,034 | INFO     | mean y: 2561603.3438818567
[2025-12-14 02:47:32] 2025-12-14 07:46:44,034 | INFO     | intersect: 8097414692.895957
[2025-12-14 02:47:32] 2025-12-14 07:46:44,034 | INFO     | chi2: 3.1589452671620646
[2025-12-14 02:47:32] 2025-12-14 07:46:44,034 | INFO     | current chi2=3.1589452671620646 (change=3.789524825431825 %)
[2025-12-14 02:47:32] 2025-12-14 07:46:44,034 | INFO     | left removable region: 20
[2025-12-14 02:47:32] 2025-12-14 07:46:44,035 | INFO     | sum of square deviations: 28826881469.672955
[2025-12-14 02:47:32] 2025-12-14 07:46:44,289 | INFO     | monitor loop #1651: job 0:6929261160 is in state 'finished'
[2025-12-14 02:47:32] 2025-12-14 07:46:44,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 02:47:32] 2025-12-14 07:46:44,299 | INFO     | sum of deviations: -43247123176.242836
[2025-12-14 02:47:32] 2025-12-14 07:46:44,299 | INFO     | mean x: 1765683844.143488
[2025-12-14 02:47:32] 2025-12-14 07:46:44,299 | INFO     | mean y: 2582250.849889625
[2025-12-14 02:47:32] 2025-12-14 07:46:44,299 | INFO     | intersect: 2651524585.3965516
[2025-12-14 02:47:32] 2025-12-14 07:46:44,299 | INFO     | chi2: 0.19628332124804312
[2025-12-14 02:47:32] 2025-12-14 07:46:44,300 | INFO     | current memory leak: -1.50 B/s (using 453 data points, chi2=0.20)
[2025-12-14 02:47:32] 2025-12-14 07:46:44,405 | INFO     | could have reported an average CPU frequency of 2814 MHz (20 samples)
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | ..............................
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | . Timing measurements:
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | . get job = 0 s
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | . initial setup = 4 s
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | . payload setup = 10 s
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | . stage-in = 1 s
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | . payload execution = 29517 s
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | . stage-out = 8 s
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | . log creation = 2 s
[2025-12-14 02:47:32] 2025-12-14 07:46:44,406 | INFO     | ..............................
[2025-12-14 02:47:32] 2025-12-14 07:46:48,849 | INFO     | 
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | job summary report
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | --------------------------------------------------
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | PanDA job id: 6929261160
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | task id: 47898763
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | errors: (none)
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | pilot state: finished 
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | transexitcode: 0
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | exeerrorcode: 0
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | exeerrordiag: 
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | exitcode: 0
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | exitmsg: OK
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | cpuconsumptiontime: 62792 s
[2025-12-14 02:47:32] 2025-12-14 07:46:48,850 | INFO     | nevents: 400
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | neventsw: 0
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | pid: 3555634
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | pgrp: 3555634
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | corecount: 9
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | event service: False
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | sizes: {0: 2283776, 1: 2283975, 11: 2284237, 12: 2284265, 29533: 2316483, 29543: 2325481, 29548: 2325665, 29602: 2325689}
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | --------------------------------------------------
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | 
[2025-12-14 02:47:32] 2025-12-14 07:46:48,851 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 02:47:32] 2025-12-14 07:46:49,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,177 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,177 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,178 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 02:47:32] 2025-12-14 07:46:49,179 | INFO     | job 6929261160 has completed (purged errors)
[2025-12-14 02:47:32] 2025-12-14 07:46:49,179 | INFO     | overall cleanup function is called
[2025-12-14 02:47:32] 2025-12-14 07:46:50,285 | INFO     | --- collectZombieJob: --- 10, [3555634]
[2025-12-14 02:47:32] 2025-12-14 07:46:50,286 | INFO     | zombie collector waiting for pid 3555634
[2025-12-14 02:47:32] 2025-12-14 07:46:50,286 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 02:47:32] 2025-12-14 07:46:50,286 | INFO     | collected zombie processes
[2025-12-14 02:47:32] 2025-12-14 07:46:50,286 | INFO     | will attempt to kill all subprocesses of pid=3555634
[2025-12-14 02:47:32] 2025-12-14 07:46:54,362 | INFO     | PID=3544554 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 02:47:32] 2025-12-14 07:46:54,362 | INFO     | .. there are 25 such processes running
[2025-12-14 02:47:32] 2025-12-14 07:46:54,499 | INFO     | process IDs to be killed: [3555634] (in reverse order)
[2025-12-14 02:47:32] 2025-12-14 07:46:55,979 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 02:47:32] 2025-12-14 07:46:56,025 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 02:47:32] 2025-12-14 07:46:56,084 | INFO     | did not find any defunct processes belonging to 3555634
[2025-12-14 02:47:32] 2025-12-14 07:46:56,272 | INFO     | did not find any defunct processes belonging to 3555634
[2025-12-14 02:47:32] 2025-12-14 07:46:56,272 | INFO     | ready for new job
[2025-12-14 02:47:32] 2025-12-14 07:46:56,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 02:47:32] 2025-12-14 07:46:56,279 | INFO     | ***************************************
[2025-12-14 02:47:32] 2025-12-14 07:46:56,279 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 02:47:32] 2025-12-14 07:46:56,279 | INFO     | ***************************************
[2025-12-14 02:47:32] 2025-12-14 07:46:56,280 | INFO     | 
[2025-12-14 02:47:32] 2025-12-14 07:46:56,287 | INFO     | architecture information:
[2025-12-14 02:47:32] 2025-12-14 07:46:56,288 | INFO     | executing command: cat /etc/os-release
[2025-12-14 02:47:32] 2025-12-14 07:46:56,427 | INFO     | cat /etc/os-release:
[2025-12-14 02:47:32] NAME="CentOS Linux"
[2025-12-14 02:47:32] VERSION="7 (Core)"
[2025-12-14 02:47:32] ID="centos"
[2025-12-14 02:47:32] ID_LIKE="rhel fedora"
[2025-12-14 02:47:32] VERSION_ID="7"
[2025-12-14 02:47:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 02:47:32] ANSI_COLOR="0;31"
[2025-12-14 02:47:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 02:47:32] HOME_URL="https://www.centos.org/"
[2025-12-14 02:47:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 02:47:32] 
[2025-12-14 02:47:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 02:47:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 02:47:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 02:47:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 02:47:32] 
[2025-12-14 02:47:32] 2025-12-14 07:46:56,427 | INFO     | ***************************************
[2025-12-14 02:47:32] 2025-12-14 07:46:57,037 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 02:47:32] 2025-12-14 07:46:57,319 | INFO     | sufficient remaining disk space (74588356608 B)
[2025-12-14 02:47:32] 2025-12-14 07:46:57,320 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 02:47:32] 2025-12-14 07:46:57,320 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 02:47:32] 2025-12-14 07:46:57,320 | INFO     | update_server=False
[2025-12-14 02:47:32] 2025-12-14 07:46:57,320 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 02:47:32] 2025-12-14 07:46:57,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 02:47:32] 2025-12-14 07:46:57,357 | INFO     | aborting loop
[2025-12-14 02:47:32] 2025-12-14 07:46:57,698 | INFO     | all payload control threads have been joined
[2025-12-14 02:47:32] 2025-12-14 07:46:57,812 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 02:47:32] 2025-12-14 07:46:58,290 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 02:47:32] 2025-12-14 07:46:58,335 | INFO     | [job] retrieve thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:58,375 | INFO     | all data control threads have been joined
[2025-12-14 02:47:32] 2025-12-14 07:46:58,376 | INFO     | [job] job monitor thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:58,410 | INFO     | [payload] validate_post thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:58,411 | INFO     | [payload] failed_post thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:58,672 | INFO     | [data] copytool_in thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:58,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 02:47:32] 2025-12-14 07:46:58,731 | INFO     | [payload] control thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:58,740 | INFO     | all job control threads have been joined
[2025-12-14 02:47:32] 2025-12-14 07:46:58,762 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:58,769 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:58,776 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:59,263 | INFO     | [job] validate thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:59,265 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:59,308 | INFO     | [job] queue monitor thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:59,402 | INFO     | [data] control thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:46:59,770 | INFO     | [job] control thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:47:00,707 | INFO     | [data] copytool_out thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:47:01,879 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 02:47:32] 2025-12-14 07:47:01,989 | INFO     | [monitor] cgroup control has ended
[2025-12-14 02:47:32] 2025-12-14 07:47:03,114 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140584586553152)>', '<ExcThread(monitor, started 140583867770624)>']
[2025-12-14 02:47:32] 2025-12-14 07:47:08,153 | INFO     | all workflow threads have been joined
[2025-12-14 02:47:32] 2025-12-14 07:47:08,153 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 02:47:32] 2025-12-14 07:47:08,154 | INFO     | traces error code: 0
[2025-12-14 02:47:32] 2025-12-14 07:47:08,154 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 02:47:32] 2025-12-14 07:47:28,516 | INFO     | PID=3544554 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 02:47:32] 2025-12-14 07:47:28,528 | INFO     | .. there are 25 such processes running
[2025-12-14 02:47:32] 2025-12-14 07:47:28,529 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 02:47:32] 2025-12-14 07:47:28,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 02:47:32] 2025-12-14 07:47:28,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 02:47:32] 2025-12-14 07:47:28,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 02:47:32] 2025-12-14 07:47:28,529 | INFO     | [monitor] control thread has ended
[2025-12-14 02:47:32] 2025-12-14 07:47:30,211 [wrapper] ==== pilot stdout END ====
[2025-12-14 02:47:32] 2025-12-14 07:47:30,260 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 02:47:32] 2025-12-14 07:47:30,282 [wrapper] pilotpid: 3544554
[2025-12-14 02:47:32] 2025-12-14 07:47:30,342 [wrapper] Pilot exit status: 0
[2025-12-14 02:47:32] 2025-12-14 07:47:30,610 [wrapper] pandaids: 6929261160
[2025-12-14 02:47:32] 2025-12-14 07:47:31,573 [wrapper] cleanup supervisor_pilot  852274 3544555
[2025-12-14 02:47:32] 2025-12-14 07:47:31,612 [wrapper] Test setup, not cleaning
[2025-12-14 02:47:32] 2025-12-14 07:47:31,616 [wrapper] apfmon messages muted
[2025-12-14 02:47:32] 2025-12-14 07:47:31,619 [wrapper] ==== wrapper stdout END ====
[2025-12-14 02:47:32] 2025-12-14 07:47:31,629 [wrapper] ==== wrapper stderr END ====
[2025-12-14 02:47:32]  *** Error codes and diagnostics ***
[2025-12-14 02:47:33]     "exeErrorCode": 0,
[2025-12-14 02:47:33]     "exeErrorDiag": "",
[2025-12-14 02:47:33]     "pilotErrorCode": 0,
[2025-12-14 02:47:33]     "pilotErrorDiag": "",
[2025-12-14 02:47:33]  *** Listing of results directory ***
[2025-12-14 02:47:33] total 443144
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-14 02:47:33] -rwx------. 1 boincer umatlas     36322 Dec 13 04:38 runpilot2-wrapper.sh
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 04:39 queuedata.json
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas       100 Dec 13 18:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 02:47:33] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 18:32 run_atlas
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas       105 Dec 13 18:32 job.xml
[2025-12-14 02:47:33] -rw-r--r--. 2 boincer umatlas 224123796 Dec 13 18:32 EVNT.47898761._000021.pool.root.1
[2025-12-14 02:47:33] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 18:32 start_atlas.sh
[2025-12-14 02:47:33] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 18:32 shared
[2025-12-14 02:47:33] -rw-r--r--. 2 boincer umatlas    592393 Dec 13 18:32 input.tar.gz
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas         0 Dec 13 18:32 boinc_lockfile
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas      2502 Dec 13 18:32 pandaJob.out
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas        57 Dec 13 18:32 setup.sh.local
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas    991736 Dec 13 18:33 agis_schedconf.cvmfs.json
[2025-12-14 02:47:33] drwx------. 5 boincer umatlas      4096 Dec 13 18:33 pilot3
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas      6843 Dec 14 02:37 init_data.xml
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas 217402646 Dec 14 02:40 HITS.47898763._000514.pool.root.1
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas       531 Dec 14 02:41 boinc_task_state.xml
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas      1039 Dec 14 02:45 memory_monitor_summary.json
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas   1516240 Dec 14 02:45 agis_ddmendpoints.agis.ALL.json
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas    649890 Dec 14 02:45 log.47898763._000514.job.log.tgz.1
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas        95 Dec 14 02:46 pilot_heartbeat.json
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas      6207 Dec 14 02:46 heartbeat.json
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 02:47 boinc_mmap_file
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas        28 Dec 14 02:47 wrapper_checkpoint.txt
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas       823 Dec 14 02:47 pilotlog.txt
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas   3521849 Dec 14 02:47 log.47898763._000514.job.log.1
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas       357 Dec 14 02:47 output.list
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas       620 Dec 14 02:47 runtime_log
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas   4188160 Dec 14 02:47 result.tar.gz
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas       659 Dec 14 02:47 SNgNDmZGbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRgSKDmOnTZWo.diag
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas      9348 Dec 14 02:47 runtime_log.err
[2025-12-14 02:47:33] -rw-r--r--. 1 boincer umatlas     21050 Dec 14 02:47 stderr.txt
[2025-12-14 02:47:33] HITS file was successfully produced:
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas 217402646 Dec 14 02:40 shared/HITS.pool.root.1
[2025-12-14 02:47:33]  *** Contents of shared directory: ***
[2025-12-14 02:47:33] total 435872
[2025-12-14 02:47:33] -rw-r--r--. 2 boincer umatlas 224123796 Dec 13 18:32 ATLAS.root_0
[2025-12-14 02:47:33] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 18:32 start_atlas.sh
[2025-12-14 02:47:33] -rw-r--r--. 2 boincer umatlas    592393 Dec 13 18:32 input.tar.gz
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas 217402646 Dec 14 02:40 HITS.pool.root.1
[2025-12-14 02:47:33] -rw-------. 1 boincer umatlas   4188160 Dec 14 02:47 result.tar.gz
02:47:34 (3532983): run_atlas exited; CPU time 63778.017761
02:47:34 (3532983): called boinc_finish(0)

</stderr_txt>
]]>

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