Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:59:43 (2816829): wrapper (7.7.26015): starting
16:59:43 (2816829): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 16:59:43] Arguments: --nthreads 12
[2025-12-13 16:59:43] Threads: 12
[2025-12-13 16:59:43] Checking for CVMFS
[2025-12-13 16:59:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 16:59:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 16:59:44] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 16:59:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 16:59:44] 2.13.2.0 9432 58893 237912 153973 3 196 28011342 39288833 5537 16776704 0 45773175 99.679 42343675 39394 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 16:59:44] CVMFS is ok
[2025-12-13 16:59:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 16:59:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 16:59:44] Further information can be found at the LHC@home message board.
[2025-12-13 16:59:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 16:59:44] Checking for apptainer binary...
[2025-12-13 16:59:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 16:59:44] Running /usr/bin/apptainer --version
[2025-12-13 16:59:44] apptainer version 1.4.4-1.el9
[2025-12-13 16:59:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 16:59:44] c-211-5.aglt2.org
[2025-12-13 16:59:44] apptainer works
[2025-12-13 16:59:44] Set ATHENA_PROC_NUMBER=12
[2025-12-13 16:59:44] Set ATHENA_CORE_NUMBER=12
[2025-12-13 16:59:44] Starting ATLAS job with PandaID=6929263118
[2025-12-13 16:59:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 03:13:16]  *** The last 200 lines of the pilot log: ***
[2025-12-14 03:13:16] 2025-12-14 07:07:49,725 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-14 03:13:16] 2025-12-14 07:07:49,738 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1658999999995
[2025-12-14 03:13:16] 2025-12-14 07:07:49,755 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929263118/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 03:13:16] 2025-12-14 07:07:49,756 | INFO     | extracted standard info from prmon json
[2025-12-14 03:13:16] 2025-12-14 07:07:49,756 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 03:13:16] 2025-12-14 07:07:49,756 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 03:13:16] 2025-12-14 07:07:49,756 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 03:13:16] 2025-12-14 07:07:49,756 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 03:13:16] 2025-12-14 07:07:49,922 | INFO     | fitting pss+swap vs Time
[2025-12-14 03:13:16] 2025-12-14 07:07:49,923 | INFO     | sum of square deviations: 48285506878.5
[2025-12-14 03:13:16] 2025-12-14 07:07:49,988 | INFO     | sum of deviations: 27178938406.999977
[2025-12-14 03:13:16] 2025-12-14 07:07:49,988 | INFO     | mean x: 1765679598.5
[2025-12-14 03:13:16] 2025-12-14 07:07:49,988 | INFO     | mean y: 2687939.7397769517
[2025-12-14 03:13:16] 2025-12-14 07:07:49,988 | INFO     | intersect: -991177510.9198298
[2025-12-14 03:13:16] 2025-12-14 07:07:49,993 | INFO     | chi2: 4.32110350013886
[2025-12-14 03:13:16] 2025-12-14 07:07:49,995 | INFO     | sum of square deviations: 46951771485.99238
[2025-12-14 03:13:16] 2025-12-14 07:07:50,010 | INFO     | sum of deviations: 178840805730.29623
[2025-12-14 03:13:16] 2025-12-14 07:07:50,011 | INFO     | mean x: 1765679446.0037522
[2025-12-14 03:13:16] 2025-12-14 07:07:50,011 | INFO     | mean y: 2705250.851782364
[2025-12-14 03:13:16] 2025-12-14 07:07:50,011 | INFO     | intersect: -6722824474.452465
[2025-12-14 03:13:16] 2025-12-14 07:07:50,012 | INFO     | chi2: 1.2800964460075936
[2025-12-14 03:13:16] 2025-12-14 07:07:50,012 | INFO     | current chi2=1.2800964460075936 (change=70.37570504926676 %)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,013 | INFO     | sum of square deviations: 45642761747.99266
[2025-12-14 03:13:16] 2025-12-14 07:07:50,028 | INFO     | sum of deviations: 176620156300.22366
[2025-12-14 03:13:16] 2025-12-14 07:07:50,028 | INFO     | mean x: 1765679293.503788
[2025-12-14 03:13:16] 2025-12-14 07:07:50,029 | INFO     | mean y: 2704992.1382575757
[2025-12-14 03:13:16] 2025-12-14 07:07:50,029 | INFO     | intersect: -6829803402.435887
[2025-12-14 03:13:16] 2025-12-14 07:07:50,034 | INFO     | chi2: 1.279864101667304
[2025-12-14 03:13:16] 2025-12-14 07:07:50,034 | INFO     | current chi2=1.279864101667304 (change=0.018150533970644814 %)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,034 | INFO     | right removable region: 527
[2025-12-14 03:13:16] 2025-12-14 07:07:50,035 | INFO     | sum of square deviations: 46951541030.953186
[2025-12-14 03:13:16] 2025-12-14 07:07:50,051 | INFO     | sum of deviations: -48424159372.992455
[2025-12-14 03:13:16] 2025-12-14 07:07:50,051 | INFO     | mean x: 1765679751.0093808
[2025-12-14 03:13:16] 2025-12-14 07:07:50,051 | INFO     | mean y: 2696541.598499062
[2025-12-14 03:13:16] 2025-12-14 07:07:50,051 | INFO     | intersect: 1823756208.3765562
[2025-12-14 03:13:16] 2025-12-14 07:07:50,052 | INFO     | chi2: 3.1256599833994296
[2025-12-14 03:13:16] 2025-12-14 07:07:50,052 | INFO     | current chi2=3.1256599833994296 (change=27.665236824367074 %)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,053 | INFO     | sum of square deviations: 45642366345.810555
[2025-12-14 03:13:16] 2025-12-14 07:07:50,069 | INFO     | sum of deviations: -46501375350.215904
[2025-12-14 03:13:16] 2025-12-14 07:07:50,069 | INFO     | mean x: 1765679903.5189395
[2025-12-14 03:13:16] 2025-12-14 07:07:50,069 | INFO     | mean y: 2696310.971590909
[2025-12-14 03:13:16] 2025-12-14 07:07:50,074 | INFO     | intersect: 1801607071.202226
[2025-12-14 03:13:16] 2025-12-14 07:07:50,075 | INFO     | chi2: 3.1059704848212726
[2025-12-14 03:13:16] 2025-12-14 07:07:50,075 | INFO     | current chi2=3.1059704848212726 (change=0.6299309164377819 %)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,075 | INFO     | left removable region: 20
[2025-12-14 03:13:16] 2025-12-14 07:07:50,076 | INFO     | sum of square deviations: 40409965058.66675
[2025-12-14 03:13:16] 2025-12-14 07:07:50,091 | INFO     | sum of deviations: 103652928677.69234
[2025-12-14 03:13:16] 2025-12-14 07:07:50,091 | INFO     | mean x: 1765679873.025641
[2025-12-14 03:13:16] 2025-12-14 07:07:50,091 | INFO     | mean y: 2713537.100591716
[2025-12-14 03:13:16] 2025-12-14 07:07:50,091 | INFO     | intersect: -4526315124.039309
[2025-12-14 03:13:16] 2025-12-14 07:07:50,092 | INFO     | chi2: 0.019345692769736827
[2025-12-14 03:13:16] 2025-12-14 07:07:50,092 | INFO     | current memory leak: 2.57 B/s (using 507 data points, chi2=0.02)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,093 | INFO     | could have reported an average CPU frequency of 2611 MHz (21 samples)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,098 | INFO     | ..............................
[2025-12-14 03:13:16] 2025-12-14 07:07:50,098 | INFO     | . Timing measurements:
[2025-12-14 03:13:16] 2025-12-14 07:07:50,098 | INFO     | . get job = 0 s
[2025-12-14 03:13:16] 2025-12-14 07:07:50,098 | INFO     | . initial setup = 2 s
[2025-12-14 03:13:16] 2025-12-14 07:07:50,098 | INFO     | . payload setup = 5 s
[2025-12-14 03:13:16] 2025-12-14 07:07:50,098 | INFO     | . stage-in = 0 s
[2025-12-14 03:13:16] 2025-12-14 07:07:50,098 | INFO     | . payload execution = 32774 s
[2025-12-14 03:13:16] 2025-12-14 07:07:50,098 | INFO     | . stage-out = 16 s
[2025-12-14 03:13:16] 2025-12-14 07:07:50,099 | INFO     | . log creation = 2 s
[2025-12-14 03:13:16] 2025-12-14 07:07:50,099 | INFO     | ..............................
[2025-12-14 03:13:16] 2025-12-14 07:07:50,316 | INFO     | 
[2025-12-14 03:13:16] 2025-12-14 07:07:50,317 | INFO     | job summary report
[2025-12-14 03:13:16] 2025-12-14 07:07:50,317 | INFO     | --------------------------------------------------
[2025-12-14 03:13:16] 2025-12-14 07:07:50,317 | INFO     | PanDA job id: 6929263118
[2025-12-14 03:13:16] 2025-12-14 07:07:50,317 | INFO     | task id: 47898763
[2025-12-14 03:13:16] 2025-12-14 07:07:50,317 | INFO     | errors: (none)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,317 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 03:13:16] 2025-12-14 07:07:50,317 | INFO     | pilot state: finished 
[2025-12-14 03:13:16] 2025-12-14 07:07:50,317 | INFO     | transexitcode: 0
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | exeerrorcode: 0
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | exeerrordiag: 
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | exitcode: 0
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | exitmsg: OK
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | cpuconsumptiontime: 73064 s
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | nevents: 400
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | neventsw: 0
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | pid: 2829260
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | pgrp: 2829260
[2025-12-14 03:13:16] 2025-12-14 07:07:50,318 | INFO     | corecount: 12
[2025-12-14 03:13:16] 2025-12-14 07:07:50,319 | INFO     | event service: False
[2025-12-14 03:13:16] 2025-12-14 07:07:50,319 | INFO     | sizes: {0: 2283951, 4: 2284213, 11: 2284241, 32785: 2323258, 32787: 2323257, 32805: 2332311, 32807: 2332495, 32860: 2332689}
[2025-12-14 03:13:16] 2025-12-14 07:07:50,319 | INFO     | --------------------------------------------------
[2025-12-14 03:13:16] 2025-12-14 07:07:50,319 | INFO     | 
[2025-12-14 03:13:16] 2025-12-14 07:07:50,319 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-14 03:13:16] 2025-12-14 07:07:50,529 | INFO     | time since job start (32876s) is within the limit (174528.0s)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,645 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,645 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,645 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,646 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,646 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 03:13:16] 2025-12-14 07:07:50,646 | INFO     | job 6929263118 has completed (purged errors)
[2025-12-14 03:13:16] 2025-12-14 07:07:50,646 | INFO     | overall cleanup function is called
[2025-12-14 03:13:16] 2025-12-14 07:07:51,765 | INFO     | --- collectZombieJob: --- 10, [2829260]
[2025-12-14 03:13:16] 2025-12-14 07:07:51,766 | INFO     | zombie collector waiting for pid 2829260
[2025-12-14 03:13:16] 2025-12-14 07:07:51,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 03:13:16] 2025-12-14 07:07:51,766 | INFO     | collected zombie processes
[2025-12-14 03:13:16] 2025-12-14 07:07:51,766 | INFO     | will attempt to kill all subprocesses of pid=2829260
[2025-12-14 03:13:16] 2025-12-14 07:07:55,316 | INFO     | process IDs to be killed: [2829260] (in reverse order)
[2025-12-14 03:13:16] 2025-12-14 07:07:56,144 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 03:13:16] 2025-12-14 07:07:56,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 03:13:16] 2025-12-14 07:07:56,290 | INFO     | did not find any defunct processes belonging to 2829260
[2025-12-14 03:13:16] 2025-12-14 07:07:56,394 | INFO     | did not find any defunct processes belonging to 2829260
[2025-12-14 03:13:16] 2025-12-14 07:07:56,394 | INFO     | ready for new job
[2025-12-14 03:13:16] 2025-12-14 07:07:56,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 03:13:16] 2025-12-14 07:07:56,438 | INFO     | ***************************************
[2025-12-14 03:13:16] 2025-12-14 07:07:56,438 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 03:13:16] 2025-12-14 07:07:56,438 | INFO     | ***************************************
[2025-12-14 03:13:16] 2025-12-14 07:07:56,438 | INFO     | 
[2025-12-14 03:13:16] 2025-12-14 07:07:56,482 | INFO     | architecture information:
[2025-12-14 03:13:16] 2025-12-14 07:07:56,503 | INFO     | executing command: cat /etc/os-release
[2025-12-14 03:13:16] 2025-12-14 07:07:56,660 | INFO     | cat /etc/os-release:
[2025-12-14 03:13:16] NAME="CentOS Linux"
[2025-12-14 03:13:16] VERSION="7 (Core)"
[2025-12-14 03:13:16] ID="centos"
[2025-12-14 03:13:16] ID_LIKE="rhel fedora"
[2025-12-14 03:13:16] VERSION_ID="7"
[2025-12-14 03:13:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 03:13:16] ANSI_COLOR="0;31"
[2025-12-14 03:13:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 03:13:16] HOME_URL="https://www.centos.org/"
[2025-12-14 03:13:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 03:13:16] 
[2025-12-14 03:13:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 03:13:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 03:13:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 03:13:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 03:13:16] 
[2025-12-14 03:13:16] 2025-12-14 07:07:56,660 | INFO     | ***************************************
[2025-12-14 03:13:16] 2025-12-14 07:07:57,164 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-14 03:13:16] 2025-12-14 07:07:57,362 | INFO     | sufficient remaining disk space (52485423104 B)
[2025-12-14 03:13:16] 2025-12-14 07:07:57,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 03:13:16] 2025-12-14 07:07:57,362 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 03:13:16] 2025-12-14 07:07:57,362 | INFO     | update_server=False
[2025-12-14 03:13:16] 2025-12-14 07:07:57,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 03:13:16] 2025-12-14 07:07:57,380 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 03:13:16] 2025-12-14 07:07:57,381 | INFO     | aborting loop
[2025-12-14 03:13:16] 2025-12-14 07:07:57,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 03:13:16] 2025-12-14 07:07:57,663 | INFO     | all payload control threads have been joined
[2025-12-14 03:13:16] 2025-12-14 07:07:58,210 | INFO     | all data control threads have been joined
[2025-12-14 03:13:16] 2025-12-14 07:07:58,369 | INFO     | [job] retrieve thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:58,387 | INFO     | [job] job monitor thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:58,579 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 03:13:16] 2025-12-14 07:07:58,670 | INFO     | [payload] control thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:58,768 | INFO     | all job control threads have been joined
[2025-12-14 03:13:16] 2025-12-14 07:07:59,003 | INFO     | [payload] failed_post thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,217 | INFO     | [data] control thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,431 | INFO     | [data] copytool_out thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 03:13:16] 2025-12-14 07:07:59,587 | INFO     | [data] copytool_in thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,587 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,588 | INFO     | [job] validate thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,636 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,640 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,655 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,774 | INFO     | [job] control thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:07:59,809 | INFO     | [payload] validate_post thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:08:00,551 | INFO     | [job] queue monitor thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:08:02,602 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 03:13:16] 2025-12-14 07:08:22,660 | INFO     | 32880s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-14 03:13:16] 2025-12-14 07:08:29,883 | INFO     | PID=2820546 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 03:13:16] 2025-12-14 07:08:29,927 | INFO     | .. there are 8 such processes running
[2025-12-14 03:13:16] 2025-12-14 07:08:29,928 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 03:13:16] 2025-12-14 07:08:29,928 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 03:13:16] 2025-12-14 07:08:29,928 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 03:13:16] 2025-12-14 07:08:56,656 | INFO     | [monitor] cgroup control has ended
[2025-12-14 03:13:16] 2025-12-14 07:08:58,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862341883712)>', '<ExcThread(monitor, started 139861700892416)>']
[2025-12-14 03:13:16] 2025-12-14 07:08:58,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 03:13:16] 2025-12-14 07:08:58,244 | INFO     | [monitor] control thread has ended
[2025-12-14 03:13:16] 2025-12-14 07:09:03,057 | INFO     | all workflow threads have been joined
[2025-12-14 03:13:16] 2025-12-14 07:09:03,058 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 03:13:16] 2025-12-14 07:09:03,058 | INFO     | traces error code: 0
[2025-12-14 03:13:16] 2025-12-14 07:09:03,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 03:13:16] 2025-12-14 07:09:05,025 [wrapper] ==== pilot stdout END ====
[2025-12-14 03:13:16] 2025-12-14 07:09:05,070 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 03:13:16] 2025-12-14 07:09:05,123 [wrapper] pilotpid: 2820546
[2025-12-14 03:13:16] 2025-12-14 07:09:05,167 [wrapper] Pilot exit status: 0
[2025-12-14 03:13:16] 2025-12-14 07:09:05,533 [wrapper] pandaids: 6929263118
[2025-12-14 03:13:16] 2025-12-14 07:09:06,448 [wrapper] cleanup supervisor_pilot 3576644 2820547
[2025-12-14 03:13:16] 2025-12-14 07:09:06,488 [wrapper] Test setup, not cleaning
[2025-12-14 03:13:16] 2025-12-14 07:09:06,546 [wrapper] apfmon messages muted
[2025-12-14 03:13:16] 2025-12-14 07:09:06,604 [wrapper] ==== wrapper stdout END ====
[2025-12-14 03:13:16] 2025-12-14 07:09:06,667 [wrapper] ==== wrapper stderr END ====
[2025-12-14 03:13:16]  *** Error codes and diagnostics ***
[2025-12-14 03:13:16]     "exeErrorCode": 0,
[2025-12-14 03:13:16]     "exeErrorDiag": "",
[2025-12-14 03:13:16]     "pilotErrorCode": 0,
[2025-12-14 03:13:16]     "pilotErrorDiag": "",
[2025-12-14 03:13:16]  *** Listing of results directory ***
[2025-12-14 03:13:16] total 450280
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-14 03:13:16] -rwx------. 1 boincer umatlas     36322 Dec 13 04:31 runpilot2-wrapper.sh
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 04:31 queuedata.json
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas       100 Dec 13 16:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 03:13:16] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 16:59 run_atlas
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas       105 Dec 13 16:59 job.xml
[2025-12-14 03:13:16] -rw-r--r--. 2 boincer umatlas 223206601 Dec 13 16:59 EVNT.47898761._000048.pool.root.1
[2025-12-14 03:13:16] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 16:59 start_atlas.sh
[2025-12-14 03:13:16] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 16:59 shared
[2025-12-14 03:13:16] -rw-r--r--. 2 boincer umatlas    592388 Dec 13 16:59 input.tar.gz
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas         0 Dec 13 16:59 boinc_lockfile
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas      2504 Dec 13 16:59 pandaJob.out
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas        57 Dec 13 16:59 setup.sh.local
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas    991736 Dec 13 16:59 agis_schedconf.cvmfs.json
[2025-12-14 03:13:16] drwx------. 5 boincer umatlas      4096 Dec 13 16:59 pilot3
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas 224291583 Dec 14 02:02 HITS.47898763._001185.pool.root.1
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas       531 Dec 14 02:03 boinc_task_state.xml
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas      1041 Dec 14 02:06 memory_monitor_summary.json
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas   1516240 Dec 14 02:06 agis_ddmendpoints.agis.ALL.json
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas    745691 Dec 14 02:06 log.47898763._001185.job.log.tgz.1
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas      7817 Dec 14 02:07 heartbeat.json
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas        95 Dec 14 02:08 pilot_heartbeat.json
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas      4939 Dec 14 02:09 pilotlog.txt
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas   4091487 Dec 14 02:09 log.47898763._001185.job.log.1
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas       357 Dec 14 02:09 output.list
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas       620 Dec 14 02:09 runtime_log
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas   4853760 Dec 14 02:09 result.tar.gz
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas       656 Dec 14 02:09 sMVMDmF9ao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjXOKDmog0RHo.diag
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas      9340 Dec 14 02:09 runtime_log.err
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas      6660 Dec 14 03:13 init_data.xml
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas      8192 Dec 14 03:13 boinc_mmap_file
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas        28 Dec 14 03:13 wrapper_checkpoint.txt
[2025-12-14 03:13:16] -rw-r--r--. 1 boincer umatlas     21201 Dec 14 03:13 stderr.txt
[2025-12-14 03:13:16] HITS file was successfully produced:
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas 224291583 Dec 14 02:02 shared/HITS.pool.root.1
[2025-12-14 03:13:16]  *** Contents of shared directory: ***
[2025-12-14 03:13:16] total 442352
[2025-12-14 03:13:16] -rw-r--r--. 2 boincer umatlas 223206601 Dec 13 16:59 ATLAS.root_0
[2025-12-14 03:13:16] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 16:59 start_atlas.sh
[2025-12-14 03:13:16] -rw-r--r--. 2 boincer umatlas    592388 Dec 13 16:59 input.tar.gz
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas 224291583 Dec 14 02:02 HITS.pool.root.1
[2025-12-14 03:13:16] -rw-------. 1 boincer umatlas   4853760 Dec 14 02:09 result.tar.gz
03:13:18 (2816829): run_atlas exited; CPU time 73906.743014
03:13:18 (2816829): called boinc_finish(0)

</stderr_txt>
]]>

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