Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:11:55 (8521): wrapper (7.7.26015): starting
13:11:55 (8521): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 13:11:55] Arguments: --nthreads 12
[2025-12-13 13:11:55] Threads: 12
[2025-12-13 13:11:55] Checking for CVMFS
[2025-12-13 13:11:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 13:11:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 13:11:55] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 13:11:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 13:11:55] 2.11.2.0 2945 312505 94588 153968 1 59 14081324 20275200 1 130560 2 137496256 99.963 18434251 15434 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 13:11:55] CVMFS is ok
[2025-12-13 13:11:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 13:11:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 13:11:55] Further information can be found at the LHC@home message board.
[2025-12-13 13:11:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 13:11:55] Checking for apptainer binary...
[2025-12-13 13:11:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 13:11:55] Running /usr/bin/apptainer --version
[2025-12-13 13:11:55] apptainer version 1.3.2-1.el7
[2025-12-13 13:11:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 13:11:57] c-205-2.aglt2.org
[2025-12-13 13:11:57] apptainer works
[2025-12-13 13:11:57] Set ATHENA_PROC_NUMBER=12
[2025-12-13 13:11:57] Set ATHENA_CORE_NUMBER=12
[2025-12-13 13:11:57] Starting ATLAS job with PandaID=6929263321
[2025-12-13 13:11:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 14:54:27]  *** The last 200 lines of the pilot log: ***
[2025-12-13 14:54:27]  status=None
[2025-12-13 14:54:27]  status_code=0
[2025-12-13 14:54:27]  storage_token=
[2025-12-13 14:54:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929263321/log.47898763._001388.job.log.tgz.1
[2025-12-13 14:54:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/32/log.47898763._001388.job.log.tgz.1
[2025-12-13 14:54:27]  workdir=None
[2025-12-13 14:54:27] ]
[2025-12-13 14:54:27] 2025-12-13 19:53:13,597 | INFO     | transferring file log.47898763._001388.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929263321/log.47898763._001388.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 14:54:27] 2025-12-13 19:53:13,598 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929263321/log.47898763._001388.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._001388.job
[2025-12-13 14:54:27] 2025-12-13 19:53:13,622 | INFO     | adding to output.list: log.47898763._001388.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/32/log.47898763._001388.job.log.tg
[2025-12-13 14:54:27] 2025-12-13 19:53:13,623 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 14:54:27] 2025-12-13 19:53:13,623 | INFO     | summary of transferred files:
[2025-12-13 14:54:27] 2025-12-13 19:53:13,623 | INFO     |  -- lfn=log.47898763._001388.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 14:54:27] 2025-12-13 19:53:13,624 | INFO     | stage-out finished correctly
[2025-12-13 14:54:27] 2025-12-13 19:53:15,367 | INFO     | time since job start (6063s) is within the limit (174528.0s)
[2025-12-13 14:54:27] 2025-12-13 19:53:16,431 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 14:54:27] 2025-12-13 19:53:16,511 | INFO     | job 6929263321 has state=finished
[2025-12-13 14:54:27] 2025-12-13 19:53:16,512 | INFO     | preparing for final server update for job 6929263321 in state='finished'
[2025-12-13 14:54:27] 2025-12-13 19:53:16,581 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-12-13 14:54:27] 2025-12-13 19:53:16,582 | INFO     | this job has now completed (state=finished)
[2025-12-13 14:54:27] 2025-12-13 19:53:16,582 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 14:54:27] 2025-12-13 19:53:16,582 | INFO     | log transfer has been attempted: DONE
[2025-12-13 14:54:27] 2025-12-13 19:53:16,582 | INFO     | job 6929263321 has finished - writing final server update
[2025-12-13 14:54:27] 2025-12-13 19:53:16,582 | INFO     | total number of processed events: 400 (read)
[2025-12-13 14:54:27] 2025-12-13 19:53:16,583 | INFO     | executing command: lscpu
[2025-12-13 14:54:27] 2025-12-13 19:53:16,610 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 14:54:27] 2025-12-13 19:53:17,368 | INFO     | time since job start (6065s) is within the limit (174528.0s)
[2025-12-13 14:54:27] 2025-12-13 19:53:18,489 | INFO     | PID=12258 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 14:54:27] 2025-12-13 19:53:18,656 | WARNING  | process 18635 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 14:54:27] 2025-12-13 19:53:18,656 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929263321/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 14:54:27] 2025-12-13 19:53:18,744 | INFO     | number of running child processes to parent process 18635: 1
[2025-12-13 14:54:27] 2025-12-13 19:53:18,744 | INFO     | maximum number of monitored processes: 6
[2025-12-13 14:54:27] 2025-12-13 19:53:19,489 | INFO     | time since job start (6067s) is within the limit (174528.0s)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,247 | INFO     | monitor loop #448: job 0:6929263321 is in state 'finished'
[2025-12-13 14:54:27] 2025-12-13 19:53:21,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,364 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 14:54:27] 2025-12-13 19:53:21,368 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-13 14:54:27] 2025-12-13 19:53:21,370 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929263321/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,370 | INFO     | extracted standard info from prmon json
[2025-12-13 14:54:27] 2025-12-13 19:53:21,370 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 14:54:27] 2025-12-13 19:53:21,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 14:54:27] 2025-12-13 19:53:21,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 14:54:27] 2025-12-13 19:53:21,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 14:54:27] 2025-12-13 19:53:21,374 | INFO     | fitting pss+swap vs Time
[2025-12-13 14:54:27] 2025-12-13 19:53:21,375 | INFO     | sum of square deviations: 241429643.0
[2025-12-13 14:54:27] 2025-12-13 19:53:21,375 | INFO     | sum of deviations: -3108092801.0000005
[2025-12-13 14:54:27] 2025-12-13 19:53:21,375 | INFO     | mean x: 1765652641.5
[2025-12-13 14:54:27] 2025-12-13 19:53:21,376 | INFO     | mean y: 2716903.3260869565
[2025-12-13 14:54:27] 2025-12-13 19:53:21,376 | INFO     | intersect: 22733199357.432953
[2025-12-13 14:54:27] 2025-12-13 19:53:21,376 | INFO     | chi2: 0.023128473944684518
[2025-12-13 14:54:27] 2025-12-13 19:53:21,376 | INFO     | current memory leak: -12.87 B/s (using 92 data points, chi2=0.02)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,377 | INFO     | could have reported an average CPU frequency of 2149 MHz (7 samples)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,377 | INFO     | ..............................
[2025-12-13 14:54:27] 2025-12-13 19:53:21,377 | INFO     | . Timing measurements:
[2025-12-13 14:54:27] 2025-12-13 19:53:21,377 | INFO     | . get job = 0 s
[2025-12-13 14:54:27] 2025-12-13 19:53:21,378 | INFO     | . initial setup = 2 s
[2025-12-13 14:54:27] 2025-12-13 19:53:21,378 | INFO     | . payload setup = 7 s
[2025-12-13 14:54:27] 2025-12-13 19:53:21,378 | INFO     | . stage-in = 0 s
[2025-12-13 14:54:27] 2025-12-13 19:53:21,378 | INFO     | . payload execution = 6032 s
[2025-12-13 14:54:27] 2025-12-13 19:53:21,378 | INFO     | . stage-out = 0 s
[2025-12-13 14:54:27] 2025-12-13 19:53:21,378 | INFO     | . log creation = 0 s
[2025-12-13 14:54:27] 2025-12-13 19:53:21,378 | INFO     | ..............................
[2025-12-13 14:54:27] 2025-12-13 19:53:21,490 | INFO     | time since job start (6069s) is within the limit (174528.0s)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,809 | INFO     | 
[2025-12-13 14:54:27] 2025-12-13 19:53:21,809 | INFO     | job summary report
[2025-12-13 14:54:27] 2025-12-13 19:53:21,809 | INFO     | --------------------------------------------------
[2025-12-13 14:54:27] 2025-12-13 19:53:21,809 | INFO     | PanDA job id: 6929263321
[2025-12-13 14:54:27] 2025-12-13 19:53:21,810 | INFO     | task id: 47898763
[2025-12-13 14:54:27] 2025-12-13 19:53:21,810 | INFO     | errors: (none)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,810 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 14:54:27] 2025-12-13 19:53:21,810 | INFO     | pilot state: finished 
[2025-12-13 14:54:27] 2025-12-13 19:53:21,810 | INFO     | transexitcode: 0
[2025-12-13 14:54:27] 2025-12-13 19:53:21,810 | INFO     | exeerrorcode: 0
[2025-12-13 14:54:27] 2025-12-13 19:53:21,810 | INFO     | exeerrordiag: 
[2025-12-13 14:54:27] 2025-12-13 19:53:21,811 | INFO     | exitcode: 0
[2025-12-13 14:54:27] 2025-12-13 19:53:21,811 | INFO     | exitmsg: OK
[2025-12-13 14:54:27] 2025-12-13 19:53:21,811 | INFO     | cpuconsumptiontime: 65865 s
[2025-12-13 14:54:27] 2025-12-13 19:53:21,811 | INFO     | nevents: 400
[2025-12-13 14:54:27] 2025-12-13 19:53:21,811 | INFO     | neventsw: 0
[2025-12-13 14:54:27] 2025-12-13 19:53:21,811 | INFO     | pid: 18635
[2025-12-13 14:54:27] 2025-12-13 19:53:21,812 | INFO     | pgrp: 18635
[2025-12-13 14:54:27] 2025-12-13 19:53:21,812 | INFO     | corecount: 12
[2025-12-13 14:54:27] 2025-12-13 19:53:21,812 | INFO     | event service: False
[2025-12-13 14:54:27] 2025-12-13 19:53:21,812 | INFO     | sizes: {0: 2283951, 5: 2284213, 11: 2284269, 6043: 2311016, 6045: 2320014, 6048: 2320070, 6053: 2320392}
[2025-12-13 14:54:27] 2025-12-13 19:53:21,812 | INFO     | --------------------------------------------------
[2025-12-13 14:54:27] 2025-12-13 19:53:21,812 | INFO     | 
[2025-12-13 14:54:27] 2025-12-13 19:53:21,813 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 14:54:27] 2025-12-13 19:53:21,839 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,839 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,839 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,839 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,840 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,842 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,842 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 14:54:27] 2025-12-13 19:53:21,842 | INFO     | job 6929263321 has completed (purged errors)
[2025-12-13 14:54:27] 2025-12-13 19:53:21,842 | INFO     | overall cleanup function is called
[2025-12-13 14:54:27] 2025-12-13 19:53:22,850 | INFO     | --- collectZombieJob: --- 10, [18635]
[2025-12-13 14:54:27] 2025-12-13 19:53:22,850 | INFO     | zombie collector waiting for pid 18635
[2025-12-13 14:54:27] 2025-12-13 19:53:22,856 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 14:54:27] 2025-12-13 19:53:22,856 | INFO     | collected zombie processes
[2025-12-13 14:54:27] 2025-12-13 19:53:22,856 | INFO     | will attempt to kill all subprocesses of pid=18635
[2025-12-13 14:54:27] 2025-12-13 19:53:22,947 | INFO     | process IDs to be killed: [18635] (in reverse order)
[2025-12-13 14:54:27] 2025-12-13 19:53:23,001 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 14:54:27] 2025-12-13 19:53:23,001 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 14:54:27] 2025-12-13 19:53:23,005 | INFO     | did not find any defunct processes belonging to 18635
[2025-12-13 14:54:27] 2025-12-13 19:53:23,009 | INFO     | did not find any defunct processes belonging to 18635
[2025-12-13 14:54:27] 2025-12-13 19:53:23,009 | INFO     | ready for new job
[2025-12-13 14:54:27] 2025-12-13 19:53:23,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 14:54:27] 2025-12-13 19:53:23,010 | INFO     | ***************************************
[2025-12-13 14:54:27] 2025-12-13 19:53:23,010 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 14:54:27] 2025-12-13 19:53:23,011 | INFO     | ***************************************
[2025-12-13 14:54:27] 2025-12-13 19:53:23,011 | INFO     | 
[2025-12-13 14:54:27] 2025-12-13 19:53:23,011 | INFO     | architecture information:
[2025-12-13 14:54:27] 2025-12-13 19:53:23,012 | INFO     | executing command: cat /etc/os-release
[2025-12-13 14:54:27] 2025-12-13 19:53:23,027 | INFO     | cat /etc/os-release:
[2025-12-13 14:54:27] NAME="CentOS Linux"
[2025-12-13 14:54:27] VERSION="7 (Core)"
[2025-12-13 14:54:27] ID="centos"
[2025-12-13 14:54:27] ID_LIKE="rhel fedora"
[2025-12-13 14:54:27] VERSION_ID="7"
[2025-12-13 14:54:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 14:54:27] ANSI_COLOR="0;31"
[2025-12-13 14:54:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 14:54:27] HOME_URL="https://www.centos.org/"
[2025-12-13 14:54:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 14:54:27] 
[2025-12-13 14:54:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 14:54:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 14:54:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 14:54:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 14:54:27] 
[2025-12-13 14:54:27] 2025-12-13 19:53:23,027 | INFO     | ***************************************
[2025-12-13 14:54:27] 2025-12-13 19:53:23,530 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 14:54:27] 2025-12-13 19:53:23,547 | INFO     | sufficient remaining disk space (29384245248 B)
[2025-12-13 14:54:27] 2025-12-13 19:53:23,548 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 14:54:27] 2025-12-13 19:53:23,548 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 14:54:27] 2025-12-13 19:53:23,548 | INFO     | update_server=False
[2025-12-13 14:54:27] 2025-12-13 19:53:23,548 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 14:54:27] 2025-12-13 19:53:23,648 | INFO     | all job control threads have been joined
[2025-12-13 14:54:27] 2025-12-13 19:53:23,750 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 14:54:27] 2025-12-13 19:53:23,750 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 14:54:27] 2025-12-13 19:53:23,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 14:54:27] 2025-12-13 19:53:23,751 | INFO     | will abort loop
[2025-12-13 14:54:27] 2025-12-13 19:53:24,220 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 14:54:27] 2025-12-13 19:53:24,357 | INFO     | all data control threads have been joined
[2025-12-13 14:54:27] 2025-12-13 19:53:24,554 | INFO     | [job] retrieve thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:24,653 | INFO     | [job] control thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:24,756 | INFO     | [job] job monitor thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:24,812 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:24,970 | INFO     | all payload control threads have been joined
[2025-12-13 14:54:27] 2025-12-13 19:53:25,061 | INFO     | [data] copytool_in thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:25,362 | INFO     | [data] control thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:25,470 | INFO     | [payload] failed_post thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:25,675 | INFO     | [job] validate thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:25,976 | INFO     | [payload] control thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:25,977 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:26,015 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:26,035 | INFO     | [payload] validate_post thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:26,225 | INFO     | [data] copytool_out thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:26,467 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 14:54:27] 2025-12-13 19:53:27,020 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 14:54:27] 2025-12-13 19:53:27,473 | INFO     | [job] queue monitor thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:31,025 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:34,074 | INFO     | job.realtimelogging is not enabled
[2025-12-13 14:54:27] 2025-12-13 19:53:35,079 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 14:54:27] 2025-12-13 19:53:54,685 | INFO     | PID=12258 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 14:54:27] 2025-12-13 19:53:54,686 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 14:54:27] 2025-12-13 19:53:54,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 14:54:27] 2025-12-13 19:53:54,686 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 14:54:27] 2025-12-13 19:54:21,848 | INFO     | [monitor] cgroup control has ended
[2025-12-13 14:54:27] 2025-12-13 19:54:22,501 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980067096384)>', '<ExcThread(monitor, started 139979317552896)>']
[2025-12-13 14:54:27] 2025-12-13 19:54:22,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 14:54:27] 2025-12-13 19:54:22,789 | INFO     | [monitor] control thread has ended
[2025-12-13 14:54:27] 2025-12-13 19:54:27,509 | INFO     | all workflow threads have been joined
[2025-12-13 14:54:27] 2025-12-13 19:54:27,509 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 14:54:27] 2025-12-13 19:54:27,510 | INFO     | traces error code: 0
[2025-12-13 14:54:27] 2025-12-13 19:54:27,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 14:54:27] 2025-12-13 19:54:27,597 [wrapper] ==== pilot stdout END ====
[2025-12-13 14:54:27] 2025-12-13 19:54:27,601 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 14:54:27] 2025-12-13 19:54:27,605 [wrapper] pilotpid: 12258
[2025-12-13 14:54:27] 2025-12-13 19:54:27,610 [wrapper] Pilot exit status: 0
[2025-12-13 14:54:27] 2025-12-13 19:54:27,625 [wrapper] pandaids: 6929263321
[2025-12-13 14:54:27] 2025-12-13 19:54:27,672 [wrapper] cleanup supervisor_pilot 18621 12259
[2025-12-13 14:54:27] 2025-12-13 19:54:27,676 [wrapper] Test setup, not cleaning
[2025-12-13 14:54:27] 2025-12-13 19:54:27,680 [wrapper] apfmon messages muted
[2025-12-13 14:54:27] 2025-12-13 19:54:27,684 [wrapper] ==== wrapper stdout END ====
[2025-12-13 14:54:27] 2025-12-13 19:54:27,688 [wrapper] ==== wrapper stderr END ====
[2025-12-13 14:54:27]  *** Error codes and diagnostics ***
[2025-12-13 14:54:27]     "exeErrorCode": 0,
[2025-12-13 14:54:27]     "exeErrorDiag": "",
[2025-12-13 14:54:27]     "pilotErrorCode": 0,
[2025-12-13 14:54:27]     "pilotErrorDiag": "",
[2025-12-13 14:54:27]  *** Listing of results directory ***
[2025-12-13 14:54:27] total 439308
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 04:38 queuedata.json
[2025-12-13 14:54:27] -rwx------ 1 boincer umatlas     36322 Dec 13 04:38 runpilot2-wrapper.sh
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas       100 Dec 13 13:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 14:54:27] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 13:11 run_atlas
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas       105 Dec 13 13:11 job.xml
[2025-12-13 14:54:27] -rw-r--r-- 2 boincer umatlas 225581826 Dec 13 13:11 EVNT.47898761._000056.pool.root.1
[2025-12-13 14:54:27] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 13:11 start_atlas.sh
[2025-12-13 14:54:27] drwxrwx--x 2 boincer umatlas      4096 Dec 13 13:11 shared
[2025-12-13 14:54:27] -rw-r--r-- 2 boincer umatlas    592390 Dec 13 13:11 input.tar.gz
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas         0 Dec 13 13:11 boinc_lockfile
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas      2504 Dec 13 13:11 pandaJob.out
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas        57 Dec 13 13:11 setup.sh.local
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas    991736 Dec 13 13:12 agis_schedconf.cvmfs.json
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas   1516240 Dec 13 13:12 agis_ddmendpoints.agis.ALL.json
[2025-12-13 14:54:27] drwx------ 5 boincer umatlas      4096 Dec 13 13:12 pilot3
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas      5951 Dec 13 14:47 init_data.xml
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas 217810055 Dec 13 14:52 HITS.47898763._001388.pool.root.1
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas       529 Dec 13 14:53 boinc_task_state.xml
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas      1047 Dec 13 14:53 memory_monitor_summary.json
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas    406901 Dec 13 14:53 log.47898763._001388.job.log.tgz.1
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas      7845 Dec 13 14:53 heartbeat.json
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas        95 Dec 13 14:53 pilot_heartbeat.json
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas        27 Dec 13 14:54 wrapper_checkpoint.txt
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 14:54 boinc_mmap_file
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas      5004 Dec 13 14:54 pilotlog.txt
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas    862097 Dec 13 14:54 log.47898763._001388.job.log.1
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas       357 Dec 13 14:54 output.list
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas       620 Dec 13 14:54 runtime_log
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas   1290240 Dec 13 14:54 result.tar.gz
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 14:54 runtime_log.err
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas       658 Dec 13 14:54 1dgNDmLGbo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnYOKDmwwgCqn.diag
[2025-12-13 14:54:27] -rw-r--r-- 1 boincer umatlas     22135 Dec 13 14:54 stderr.txt
[2025-12-13 14:54:27] HITS file was successfully produced:
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas 217810055 Dec 13 14:52 shared/HITS.pool.root.1
[2025-12-13 14:54:27]  *** Contents of shared directory: ***
[2025-12-13 14:54:27] total 434864
[2025-12-13 14:54:27] -rw-r--r-- 2 boincer umatlas 225581826 Dec 13 13:11 ATLAS.root_0
[2025-12-13 14:54:27] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 13:11 start_atlas.sh
[2025-12-13 14:54:27] -rw-r--r-- 2 boincer umatlas    592390 Dec 13 13:11 input.tar.gz
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas 217810055 Dec 13 14:52 HITS.pool.root.1
[2025-12-13 14:54:27] -rw------- 1 boincer umatlas   1290240 Dec 13 14:54 result.tar.gz
14:54:29 (8521): run_atlas exited; CPU time 65844.714840
14:54:29 (8521): called boinc_finish(0)

</stderr_txt>
]]>

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