Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:57:16 (24561): wrapper (7.7.26015): starting
12:57:16 (24561): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 12:57:16] Arguments: --nthreads 12
[2025-12-13 12:57:16] Threads: 12
[2025-12-13 12:57:16] Checking for CVMFS
[2025-12-13 12:57:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 12:57:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 12:57:16] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 12:57:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 12:57:16] 2.11.2.0 3103 102466 98364 153968 1 59 15518019 20275201 1 130560 0 44202645 99.928 5395999 32977 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 12:57:16] CVMFS is ok
[2025-12-13 12:57:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 12:57:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 12:57:16] Further information can be found at the LHC@home message board.
[2025-12-13 12:57:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 12:57:16] Checking for apptainer binary...
[2025-12-13 12:57:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 12:57:16] Running /usr/bin/apptainer --version
[2025-12-13 12:57:16] apptainer version 1.3.2-1.el7
[2025-12-13 12:57:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 12:57:18] c-115-41.aglt2.org
[2025-12-13 12:57:18] apptainer works
[2025-12-13 12:57:18] Set ATHENA_PROC_NUMBER=12
[2025-12-13 12:57:18] Set ATHENA_CORE_NUMBER=12
[2025-12-13 12:57:18] Starting ATLAS job with PandaID=6929262033
[2025-12-13 12:57:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 14:27:47]  *** The last 200 lines of the pilot log: ***
[2025-12-13 14:27:47]  replicas=None
[2025-12-13 14:27:47]  scope=mc23_13p6TeV
[2025-12-13 14:27:47]  status=None
[2025-12-13 14:27:47]  status_code=0
[2025-12-13 14:27:47]  storage_token=
[2025-12-13 14:27:47]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929262033/log.47898763._000826.job.log.tgz.1
[2025-12-13 14:27:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/c3/log.47898763._000826.job.log.tgz.1
[2025-12-13 14:27:47]  workdir=None
[2025-12-13 14:27:47] ]
[2025-12-13 14:27:47] 2025-12-13 19:26:47,303 | INFO     | transferring file log.47898763._000826.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929262033/log.47898763._000826.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 14:27:47] 2025-12-13 19:26:47,303 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929262033/log.47898763._000826.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._000826.job
[2025-12-13 14:27:47] 2025-12-13 19:26:47,325 | INFO     | adding to output.list: log.47898763._000826.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/c3/log.47898763._000826.job.log.tg
[2025-12-13 14:27:47] 2025-12-13 19:26:47,326 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 14:27:47] 2025-12-13 19:26:47,326 | INFO     | summary of transferred files:
[2025-12-13 14:27:47] 2025-12-13 19:26:47,326 | INFO     |  -- lfn=log.47898763._000826.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 14:27:47] 2025-12-13 19:26:47,327 | INFO     | stage-out finished correctly
[2025-12-13 14:27:47] 2025-12-13 19:26:48,209 | INFO     | time since job start (5355s) is within the limit (174528.0s)
[2025-12-13 14:27:47] 2025-12-13 19:26:49,043 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 14:27:47] 2025-12-13 19:26:49,648 | INFO     | monitor loop #401: job 0:6929262033 is in state 'finished'
[2025-12-13 14:27:47] 2025-12-13 19:26:49,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 14:27:47] 2025-12-13 19:26:50,215 | INFO     | time since job start (5357s) is within the limit (174528.0s)
[2025-12-13 14:27:47] 2025-12-13 19:26:50,518 | INFO     | job 6929262033 has state=finished
[2025-12-13 14:27:47] 2025-12-13 19:26:50,519 | INFO     | preparing for final server update for job 6929262033 in state='finished'
[2025-12-13 14:27:47] 2025-12-13 19:26:50,519 | INFO     | this job has now completed (state=finished)
[2025-12-13 14:27:47] 2025-12-13 19:26:50,519 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 14:27:47] 2025-12-13 19:26:50,519 | INFO     | log transfer has been attempted: DONE
[2025-12-13 14:27:47] 2025-12-13 19:26:50,520 | INFO     | job 6929262033 has finished - writing final server update
[2025-12-13 14:27:47] 2025-12-13 19:26:50,520 | INFO     | total number of processed events: 400 (read)
[2025-12-13 14:27:47] 2025-12-13 19:26:50,521 | INFO     | executing command: lscpu
[2025-12-13 14:27:47] 2025-12-13 19:26:50,549 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 14:27:47] 2025-12-13 19:26:52,151 | INFO     | monitor loop #402: job 0:6929262033 is in state 'finished'
[2025-12-13 14:27:47] 2025-12-13 19:26:52,151 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 14:27:47] 2025-12-13 19:26:52,221 | INFO     | time since job start (5359s) is within the limit (174528.0s)
[2025-12-13 14:27:47] 2025-12-13 19:26:54,227 | INFO     | time since job start (5361s) is within the limit (174528.0s)
[2025-12-13 14:27:47] 2025-12-13 19:26:54,655 | INFO     | monitor loop #403: job 0:6929262033 is in state 'finished'
[2025-12-13 14:27:47] 2025-12-13 19:26:54,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 14:27:47] 2025-12-13 19:26:55,227 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 14:27:47] 2025-12-13 19:26:55,230 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1717.9166666666667
[2025-12-13 14:27:47] 2025-12-13 19:26:55,232 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929262033/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 14:27:47] 2025-12-13 19:26:55,233 | INFO     | extracted standard info from prmon json
[2025-12-13 14:27:47] 2025-12-13 19:26:55,233 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 14:27:47] 2025-12-13 19:26:55,233 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 14:27:47] 2025-12-13 19:26:55,233 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 14:27:47] 2025-12-13 19:26:55,233 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 14:27:47] 2025-12-13 19:26:55,235 | INFO     | fitting pss+swap vs Time
[2025-12-13 14:27:47] 2025-12-13 19:26:55,235 | INFO     | sum of square deviations: 164765880.0
[2025-12-13 14:27:47] 2025-12-13 19:26:55,235 | INFO     | sum of deviations: -5796236714.0
[2025-12-13 14:27:47] 2025-12-13 19:26:55,236 | INFO     | mean x: 1765651427.0
[2025-12-13 14:27:47] 2025-12-13 19:26:55,236 | INFO     | mean y: 2727186.7283950616
[2025-12-13 14:27:47] 2025-12-13 19:26:55,236 | INFO     | intersect: 62115912424.49661
[2025-12-13 14:27:47] 2025-12-13 19:26:55,236 | INFO     | chi2: 0.061155689238421976
[2025-12-13 14:27:47] 2025-12-13 19:26:55,236 | INFO     | current memory leak: -35.18 B/s (using 81 data points, chi2=0.06)
[2025-12-13 14:27:47] 2025-12-13 19:26:55,236 | INFO     | could have reported an average CPU frequency of 2143 MHz (6 samples)
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | ..............................
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | . Timing measurements:
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | . get job = 0 s
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | . initial setup = 2 s
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | . payload setup = 7 s
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | . stage-in = 0 s
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | . payload execution = 5325 s
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | . stage-out = 0 s
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | . log creation = 0 s
[2025-12-13 14:27:47] 2025-12-13 19:26:55,237 | INFO     | ..............................
[2025-12-13 14:27:47] 2025-12-13 19:26:55,309 | INFO     | 
[2025-12-13 14:27:47] 2025-12-13 19:26:55,310 | INFO     | job summary report
[2025-12-13 14:27:47] 2025-12-13 19:26:55,310 | INFO     | --------------------------------------------------
[2025-12-13 14:27:47] 2025-12-13 19:26:55,310 | INFO     | PanDA job id: 6929262033
[2025-12-13 14:27:47] 2025-12-13 19:26:55,310 | INFO     | task id: 47898763
[2025-12-13 14:27:47] 2025-12-13 19:26:55,310 | INFO     | errors: (none)
[2025-12-13 14:27:47] 2025-12-13 19:26:55,310 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 14:27:47] 2025-12-13 19:26:55,311 | INFO     | pilot state: finished 
[2025-12-13 14:27:47] 2025-12-13 19:26:55,311 | INFO     | transexitcode: 0
[2025-12-13 14:27:47] 2025-12-13 19:26:55,311 | INFO     | exeerrorcode: 0
[2025-12-13 14:27:47] 2025-12-13 19:26:55,311 | INFO     | exeerrordiag: 
[2025-12-13 14:27:47] 2025-12-13 19:26:55,311 | INFO     | exitcode: 0
[2025-12-13 14:27:47] 2025-12-13 19:26:55,311 | INFO     | exitmsg: OK
[2025-12-13 14:27:47] 2025-12-13 19:26:55,312 | INFO     | cpuconsumptiontime: 59766 s
[2025-12-13 14:27:47] 2025-12-13 19:26:55,312 | INFO     | nevents: 400
[2025-12-13 14:27:47] 2025-12-13 19:26:55,312 | INFO     | neventsw: 0
[2025-12-13 14:27:47] 2025-12-13 19:26:55,312 | INFO     | pid: 2604
[2025-12-13 14:27:47] 2025-12-13 19:26:55,312 | INFO     | pgrp: 2604
[2025-12-13 14:27:47] 2025-12-13 19:26:55,312 | INFO     | corecount: 12
[2025-12-13 14:27:47] 2025-12-13 19:26:55,312 | INFO     | event service: False
[2025-12-13 14:27:47] 2025-12-13 19:26:55,313 | INFO     | sizes: {0: 2283770, 1: 2283969, 5: 2284231, 11: 2284287, 5336: 2310753, 5338: 2319751, 5339: 2319935, 5346: 2320129}
[2025-12-13 14:27:47] 2025-12-13 19:26:55,313 | INFO     | --------------------------------------------------
[2025-12-13 14:27:47] 2025-12-13 19:26:55,313 | INFO     | 
[2025-12-13 14:27:47] 2025-12-13 19:26:55,313 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 14:27:47] 2025-12-13 19:26:55,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,339 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,339 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,339 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,341 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,341 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,341 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,341 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,342 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,342 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,342 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 14:27:47] 2025-12-13 19:26:55,342 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,342 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 14:27:47] 2025-12-13 19:26:55,342 | INFO     | job 6929262033 has completed (purged errors)
[2025-12-13 14:27:47] 2025-12-13 19:26:55,343 | INFO     | overall cleanup function is called
[2025-12-13 14:27:47] 2025-12-13 19:26:56,351 | INFO     | --- collectZombieJob: --- 10, [2604]
[2025-12-13 14:27:47] 2025-12-13 19:26:56,351 | INFO     | zombie collector waiting for pid 2604
[2025-12-13 14:27:47] 2025-12-13 19:26:56,351 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 14:27:47] 2025-12-13 19:26:56,352 | INFO     | collected zombie processes
[2025-12-13 14:27:47] 2025-12-13 19:26:56,352 | INFO     | will attempt to kill all subprocesses of pid=2604
[2025-12-13 14:27:47] 2025-12-13 19:26:56,441 | INFO     | process IDs to be killed: [2604] (in reverse order)
[2025-12-13 14:27:47] 2025-12-13 19:26:56,494 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 14:27:47] 2025-12-13 19:26:56,494 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 14:27:47] 2025-12-13 19:26:56,498 | INFO     | did not find any defunct processes belonging to 2604
[2025-12-13 14:27:47] 2025-12-13 19:26:56,501 | INFO     | did not find any defunct processes belonging to 2604
[2025-12-13 14:27:47] 2025-12-13 19:26:56,501 | INFO     | ready for new job
[2025-12-13 14:27:47] 2025-12-13 19:26:56,501 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 14:27:47] 2025-12-13 19:26:56,502 | INFO     | ***************************************
[2025-12-13 14:27:47] 2025-12-13 19:26:56,502 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 14:27:47] 2025-12-13 19:26:56,502 | INFO     | ***************************************
[2025-12-13 14:27:47] 2025-12-13 19:26:56,502 | INFO     | 
[2025-12-13 14:27:47] 2025-12-13 19:26:56,503 | INFO     | architecture information:
[2025-12-13 14:27:47] 2025-12-13 19:26:56,503 | INFO     | executing command: cat /etc/os-release
[2025-12-13 14:27:47] 2025-12-13 19:26:56,518 | INFO     | cat /etc/os-release:
[2025-12-13 14:27:47] NAME="CentOS Linux"
[2025-12-13 14:27:47] VERSION="7 (Core)"
[2025-12-13 14:27:47] ID="centos"
[2025-12-13 14:27:47] ID_LIKE="rhel fedora"
[2025-12-13 14:27:47] VERSION_ID="7"
[2025-12-13 14:27:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 14:27:47] ANSI_COLOR="0;31"
[2025-12-13 14:27:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 14:27:47] HOME_URL="https://www.centos.org/"
[2025-12-13 14:27:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 14:27:47] 
[2025-12-13 14:27:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 14:27:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 14:27:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 14:27:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 14:27:47] 
[2025-12-13 14:27:47] 2025-12-13 19:26:56,518 | INFO     | ***************************************
[2025-12-13 14:27:47] 2025-12-13 19:26:57,021 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 14:27:47] 2025-12-13 19:26:57,038 | INFO     | sufficient remaining disk space (18538823680 B)
[2025-12-13 14:27:47] 2025-12-13 19:26:57,038 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 14:27:47] 2025-12-13 19:26:57,038 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 14:27:47] 2025-12-13 19:26:57,038 | INFO     | update_server=False
[2025-12-13 14:27:47] 2025-12-13 19:26:57,038 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 14:27:47] 2025-12-13 19:26:57,039 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 14:27:47] 2025-12-13 19:26:57,052 | INFO     | all job control threads have been joined
[2025-12-13 14:27:47] 2025-12-13 19:26:57,158 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 14:27:47] 2025-12-13 19:26:57,158 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 14:27:47] 2025-12-13 19:26:57,158 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 14:27:47] 2025-12-13 19:26:57,159 | INFO     | will abort loop
[2025-12-13 14:27:47] 2025-12-13 19:26:57,432 | INFO     | all payload control threads have been joined
[2025-12-13 14:27:47] 2025-12-13 19:26:57,852 | INFO     | all data control threads have been joined
[2025-12-13 14:27:47] 2025-12-13 19:26:57,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 14:27:47] 2025-12-13 19:26:58,044 | INFO     | [job] queue monitor thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,044 | INFO     | [job] retrieve thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,058 | INFO     | [job] control thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,058 | INFO     | [payload] failed_post thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,164 | INFO     | [job] job monitor thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,282 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,308 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,439 | INFO     | [payload] control thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,568 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,666 | INFO     | [data] copytool_in thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:58,858 | INFO     | [data] control thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:59,136 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:59,390 | INFO     | [job] validate thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:59,448 | INFO     | [payload] validate_post thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:26:59,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 14:27:47] 2025-12-13 19:26:59,921 | INFO     | [data] copytool_out thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:27:03,631 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 14:27:47] 2025-12-13 19:27:27,431 | INFO     | PID=28606 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 14:27:47] 2025-12-13 19:27:27,432 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 14:27:47] 2025-12-13 19:27:27,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 14:27:47] 2025-12-13 19:27:27,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 14:27:47] 2025-12-13 19:27:31,395 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-12-13 14:27:47] 2025-12-13 19:27:41,761 | INFO     | [monitor] cgroup control has ended
[2025-12-13 14:27:47] 2025-12-13 19:27:42,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139657103509312)>', '<ExcThread(monitor, started 139656221943552)>']
[2025-12-13 14:27:47] 2025-12-13 19:27:42,508 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 14:27:47] 2025-12-13 19:27:42,509 | INFO     | [monitor] control thread has ended
[2025-12-13 14:27:47] 2025-12-13 19:27:47,229 | INFO     | all workflow threads have been joined
[2025-12-13 14:27:47] 2025-12-13 19:27:47,229 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 14:27:47] 2025-12-13 19:27:47,230 | INFO     | traces error code: 0
[2025-12-13 14:27:47] 2025-12-13 19:27:47,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 14:27:47] 2025-12-13 19:27:47,325 [wrapper] ==== pilot stdout END ====
[2025-12-13 14:27:47] 2025-12-13 19:27:47,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 14:27:47] 2025-12-13 19:27:47,332 [wrapper] pilotpid: 28606
[2025-12-13 14:27:47] 2025-12-13 19:27:47,335 [wrapper] Pilot exit status: 0
[2025-12-13 14:27:47] 2025-12-13 19:27:47,350 [wrapper] pandaids: 6929262033
[2025-12-13 14:27:47] 2025-12-13 19:27:47,394 [wrapper] cleanup supervisor_pilot 16757 28607
[2025-12-13 14:27:47] 2025-12-13 19:27:47,398 [wrapper] Test setup, not cleaning
[2025-12-13 14:27:47] 2025-12-13 19:27:47,402 [wrapper] apfmon messages muted
[2025-12-13 14:27:47] 2025-12-13 19:27:47,405 [wrapper] ==== wrapper stdout END ====
[2025-12-13 14:27:47] 2025-12-13 19:27:47,409 [wrapper] ==== wrapper stderr END ====
[2025-12-13 14:27:47]  *** Error codes and diagnostics ***
[2025-12-13 14:27:47]     "exeErrorCode": 0,
[2025-12-13 14:27:47]     "exeErrorDiag": "",
[2025-12-13 14:27:47]     "pilotErrorCode": 0,
[2025-12-13 14:27:47]     "pilotErrorDiag": "",
[2025-12-13 14:27:47]  *** Listing of results directory ***
[2025-12-13 14:27:47] total 438552
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 04:30 queuedata.json
[2025-12-13 14:27:47] -rwx------ 1 boincer umatlas     36322 Dec 13 04:31 runpilot2-wrapper.sh
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas       100 Dec 13 12:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 14:27:47] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 12:57 run_atlas
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas       105 Dec 13 12:57 job.xml
[2025-12-13 14:27:47] -rw-r--r-- 2 boincer umatlas 224536432 Dec 13 12:57 EVNT.47898761._000034.pool.root.1
[2025-12-13 14:27:47] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 12:57 start_atlas.sh
[2025-12-13 14:27:47] drwxrwx--x 2 boincer umatlas      4096 Dec 13 12:57 shared
[2025-12-13 14:27:47] -rw-r--r-- 2 boincer umatlas    592394 Dec 13 12:57 input.tar.gz
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas         0 Dec 13 12:57 boinc_lockfile
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas      2499 Dec 13 12:57 pandaJob.out
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas        57 Dec 13 12:57 setup.sh.local
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas    991736 Dec 13 12:57 agis_schedconf.cvmfs.json
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas   1516240 Dec 13 12:57 agis_ddmendpoints.agis.ALL.json
[2025-12-13 14:27:47] drwx------ 5 boincer umatlas      4096 Dec 13 12:57 pilot3
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas      5954 Dec 13 14:22 init_data.xml
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas 218323939 Dec 13 14:26 HITS.47898763._000826.pool.root.1
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas       529 Dec 13 14:26 boinc_task_state.xml
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas      1047 Dec 13 14:26 memory_monitor_summary.json
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas        95 Dec 13 14:26 pilot_heartbeat.json
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas    381823 Dec 13 14:26 log.47898763._000826.job.log.tgz.1
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas      7836 Dec 13 14:26 heartbeat.json
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas        27 Dec 13 14:27 wrapper_checkpoint.txt
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 14:27 boinc_mmap_file
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas      4932 Dec 13 14:27 pilotlog.txt
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas    767572 Dec 13 14:27 log.47898763._000826.job.log.1
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas       357 Dec 13 14:27 output.list
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas       620 Dec 13 14:27 runtime_log
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas   1167360 Dec 13 14:27 result.tar.gz
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas       659 Dec 13 14:27 X7MODm18ao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzUOKDm5bVVJn.diag
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 14:27 runtime_log.err
[2025-12-13 14:27:47] -rw-r--r-- 1 boincer umatlas     21872 Dec 13 14:27 stderr.txt
[2025-12-13 14:27:47] HITS file was successfully produced:
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas 218323939 Dec 13 14:26 shared/HITS.pool.root.1
[2025-12-13 14:27:47]  *** Contents of shared directory: ***
[2025-12-13 14:27:47] total 434224
[2025-12-13 14:27:47] -rw-r--r-- 2 boincer umatlas 224536432 Dec 13 12:57 ATLAS.root_0
[2025-12-13 14:27:47] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 12:57 start_atlas.sh
[2025-12-13 14:27:47] -rw-r--r-- 2 boincer umatlas    592394 Dec 13 12:57 input.tar.gz
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas 218323939 Dec 13 14:26 HITS.pool.root.1
[2025-12-13 14:27:47] -rw------- 1 boincer umatlas   1167360 Dec 13 14:27 result.tar.gz
14:27:48 (24561): run_atlas exited; CPU time 59738.149613
14:27:48 (24561): called boinc_finish(0)

</stderr_txt>
]]>

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