Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:10:07 (2009236): wrapper (7.7.26015): starting
10:10:07 (2009236): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 10:10:07] Arguments: --nthreads 12
[2025-12-13 10:10:07] Threads: 12
[2025-12-13 10:10:07] Checking for CVMFS
[2025-12-13 10:10:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 10:10:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 10:10:08] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 10:10:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 10:10:10] 2.11.5.0 444197 18012 292424 153968 1 257 39721658 45568000 15475 130560 0 97963085 99.706 83500269 20588 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-13 10:10:10] CVMFS is ok
[2025-12-13 10:10:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 10:10:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 10:10:10] Further information can be found at the LHC@home message board.
[2025-12-13 10:10:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 10:10:10] Checking for apptainer binary...
[2025-12-13 10:10:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 10:10:10] Running /usr/bin/apptainer --version
[2025-12-13 10:10:10] apptainer version 1.4.1-1.el9
[2025-12-13 10:10:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 10:10:12] wns0087.triumf.lcg
[2025-12-13 10:10:12] apptainer works
[2025-12-13 10:10:12] Set ATHENA_PROC_NUMBER=12
[2025-12-13 10:10:12] Set ATHENA_CORE_NUMBER=12
[2025-12-13 10:10:12] Starting ATLAS job with PandaID=6929300873
[2025-12-13 10:10:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 10:18:20]  *** The last 200 lines of the pilot log: ***
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | WARNING  | wrong length of table data, x=[1765649643.0], y=[12934.0] (must be same and length>=4)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | could have reported an average CPU frequency of 2554 MHz (4 samples)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | ..............................
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . Timing measurements:
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . get job = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . initial setup = 3 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . payload setup = 51 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . stage-in = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . payload execution = 92 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . stage-out = 1 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . log creation = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | ..............................
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 10:18:21] 2025-12-13 18:17:34,461 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929300873/pilotlog.txt
[2025-12-13 10:18:21] 2025-12-13 18:17:34,571 | INFO     | monitor loop #101: job 0:6929300873 is in state 'failed'
[2025-12-13 10:18:21] 2025-12-13 18:17:34,571 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,575 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-13 10:18:21] - Log from pilotlog.txt -
[2025-12-13 10:18:21] 2025-12-13 18:17:34,420 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929300873/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,421 | INFO     | extracted standard info from prmon json
[2025-12-13 10:18:21] 2025-12-13 18:17:34,421 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 10:18:21] 2025-12-13 18:17:34,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 10:18:21] 2025-12-13 18:17:34,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 10:18:21] 2025-12-13 18:17:34,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | WARNING  | wrong length of table data, x=[1765649643.0], y=[12934.0] (must be same and length>=4)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | could have reported an average CPU frequency of 2554 MHz (4 samples)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | ..............................
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . Timing measurements:
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . get job = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . initial setup = 3 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . payload setup = 51 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . stage-in = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . payload execution = 92 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . stage-out = 1 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . log creation = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | ..............................
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 10:18:21] 2025-12-13 18:17:34,461 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929300873/pilotlog.txt
[2025-12-13 10:18:21] 2025-12-13 18:17:34,575 | WARNING  | 
[2025-12-13 10:18:21] [begin log extracts]
[2025-12-13 10:18:21] - Log from pilotlog.txt -
[2025-12-13 10:18:21] 2025-12-13 18:17:34,420 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6929300873/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,421 | INFO     | extracted standard info from prmon json
[2025-12-13 10:18:21] 2025-12-13 18:17:34,421 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 10:18:21] 2025-12-13 18:17:34,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 10:18:21] 2025-12-13 18:17:34,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 10:18:21] 2025-12-13 18:17:34,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | WARNING  | wrong length of table data, x=[1765649643.0], y=[12934.0] (must be same and length>=4)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | could have reported an average CPU frequency of 2554 MHz (4 samples)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | ..............................
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . Timing measurements:
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . get job = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . initial setup = 3 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . payload setup = 51 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . stage-in = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . payload execution = 92 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . stage-out = 1 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | . log creation = 0 s
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | ..............................
[2025-12-13 10:18:21] 2025-12-13 18:17:34,460 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 10:18:21] 2025-12-13 18:17:34,461 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929300873/pilotlog.txt
[2025-12-13 10:18:21] [end log extracts]
[2025-12-13 10:18:21] 2025-12-13 18:17:34,575 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-13 10:18:21] 2025-12-13 18:17:34,576 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-13 10:18:21] 2025-12-13 18:17:34,868 | INFO     | time since job start (380s) is within the limit (174528.0s)
[2025-12-13 10:18:21] 2025-12-13 18:17:35,016 | INFO     | 
[2025-12-13 10:18:21] 2025-12-13 18:17:35,016 | INFO     | job summary report
[2025-12-13 10:18:21] 2025-12-13 18:17:35,016 | INFO     | --------------------------------------------------
[2025-12-13 10:18:21] 2025-12-13 18:17:35,016 | INFO     | PanDA job id: 6929300873
[2025-12-13 10:18:21] 2025-12-13 18:17:35,016 | INFO     | task id: 47898763
[2025-12-13 10:18:21] 2025-12-13 18:17:35,016 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-13 10:14:55,893 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-13 10:18:21] 2025-12-13 18:17:35,016 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 10:18:21] 2025-12-13 18:17:35,016 | INFO     | pilot state: failed 
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | transexitcode: 65
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | exeerrorcode: 65
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | exitcode: 65
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | cpuconsumptiontime: 18 s
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | nevents: 0
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | neventsw: 0
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | pid: 2020719
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | pgrp: 2020719
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | corecount: 12
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | event service: False
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | sizes: {0: 2283124, 1: 2283806, 2: 2284005, 3: 2284005, 14: 2284033, 25: 2284061, 36: 2284217, 39: 2284507, 46: 2284535, 149: 2307760, 151: 2312052, 154: 2312360, 
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | --------------------------------------------------
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | 
[2025-12-13 10:18:21] 2025-12-13 18:17:35,017 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,044 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | job 6929300873 has completed (purged errors)
[2025-12-13 10:18:21] 2025-12-13 18:17:35,045 | INFO     | overall cleanup function is called
[2025-12-13 10:18:21] 2025-12-13 18:17:36,052 | INFO     | --- collectZombieJob: --- 10, [2020719]
[2025-12-13 10:18:21] 2025-12-13 18:17:36,052 | INFO     | zombie collector waiting for pid 2020719
[2025-12-13 10:18:21] 2025-12-13 18:17:36,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 10:18:21] 2025-12-13 18:17:36,052 | INFO     | collected zombie processes
[2025-12-13 10:18:21] 2025-12-13 18:17:36,052 | INFO     | will attempt to kill all subprocesses of pid=2020719
[2025-12-13 10:18:21] 2025-12-13 18:17:36,857 | INFO     | process IDs to be killed: [2020719] (in reverse order)
[2025-12-13 10:18:21] 2025-12-13 18:17:37,087 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 10:18:21] 2025-12-13 18:17:37,088 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 10:18:21] 2025-12-13 18:17:37,121 | INFO     | did not find any defunct processes belonging to 2020719
[2025-12-13 10:18:21] 2025-12-13 18:17:37,155 | INFO     | did not find any defunct processes belonging to 2020719
[2025-12-13 10:18:21] 2025-12-13 18:17:37,155 | INFO     | ready for new job
[2025-12-13 10:18:21] 2025-12-13 18:17:37,155 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 10:18:21] 2025-12-13 18:17:37,156 | INFO     | ***************************************
[2025-12-13 10:18:21] 2025-12-13 18:17:37,156 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 10:18:21] 2025-12-13 18:17:37,156 | INFO     | ***************************************
[2025-12-13 10:18:21] 2025-12-13 18:17:37,156 | INFO     | 
[2025-12-13 10:18:21] 2025-12-13 18:17:37,158 | INFO     | architecture information:
[2025-12-13 10:18:21] 2025-12-13 18:17:37,171 | INFO     | executing command: cat /etc/os-release
[2025-12-13 10:18:21] 2025-12-13 18:17:37,335 | INFO     | cat /etc/os-release:
[2025-12-13 10:18:21] NAME="CentOS Linux"
[2025-12-13 10:18:21] VERSION="7 (Core)"
[2025-12-13 10:18:21] ID="centos"
[2025-12-13 10:18:21] ID_LIKE="rhel fedora"
[2025-12-13 10:18:21] VERSION_ID="7"
[2025-12-13 10:18:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 10:18:21] ANSI_COLOR="0;31"
[2025-12-13 10:18:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 10:18:21] HOME_URL="https://www.centos.org/"
[2025-12-13 10:18:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 10:18:21] 
[2025-12-13 10:18:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 10:18:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 10:18:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 10:18:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 10:18:21] 
[2025-12-13 10:18:21] 2025-12-13 18:17:37,336 | INFO     | ***************************************
[2025-12-13 10:18:21] 2025-12-13 18:17:37,843 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-13 10:18:21] 2025-12-13 18:17:37,868 | INFO     | sufficient remaining disk space (2230022307840 B)
[2025-12-13 10:18:21] 2025-12-13 18:17:37,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 10:18:21] 2025-12-13 18:17:37,869 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 10:18:21] 2025-12-13 18:17:37,869 | INFO     | update_server=False
[2025-12-13 10:18:21] 2025-12-13 18:17:37,869 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 10:18:21] 2025-12-13 18:17:37,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 10:18:21] 2025-12-13 18:17:38,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 10:18:21] 2025-12-13 18:17:38,082 | INFO     | aborting loop
[2025-12-13 10:18:21] 2025-12-13 18:17:38,114 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 10:18:21] 2025-12-13 18:17:38,533 | INFO     | all payload control threads have been joined
[2025-12-13 10:18:21] 2025-12-13 18:17:38,609 | INFO     | all data control threads have been joined
[2025-12-13 10:18:21] 2025-12-13 18:17:38,875 | INFO     | [job] retrieve thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,066 | INFO     | [payload] validate_post thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,088 | INFO     | [job] job monitor thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,245 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,263 | INFO     | all job control threads have been joined
[2025-12-13 10:18:21] 2025-12-13 18:17:39,542 | INFO     | [payload] control thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,617 | INFO     | [data] control thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,654 | INFO     | [job] validate thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,690 | INFO     | [payload] failed_post thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,704 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 10:18:21] 2025-12-13 18:17:39,797 | INFO     | [data] copytool_in thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:39,878 | INFO     | [data] copytool_out thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:40,118 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:40,257 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:40,275 | INFO     | [job] control thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:40,751 | INFO     | [job] queue monitor thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:17:42,123 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 10:18:21] 2025-12-13 18:18:08,649 | INFO     | PID=2013435 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 10:18:21] 2025-12-13 18:18:08,649 | INFO     | .. there are 49 such processes running
[2025-12-13 10:18:21] 2025-12-13 18:18:08,650 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 10:18:21] 2025-12-13 18:18:08,650 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 10:18:21] 2025-12-13 18:18:08,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 10:18:21] 2025-12-13 18:18:14,182 | INFO     | [monitor] cgroup control has ended
[2025-12-13 10:18:21] 2025-12-13 18:18:14,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139894900217664)>', '<ExcThread(monitor, started 139893879576320)>']
[2025-12-13 10:18:21] 2025-12-13 18:18:14,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 10:18:21] 2025-12-13 18:18:14,684 | INFO     | [monitor] control thread has ended
[2025-12-13 10:18:21] 2025-12-13 18:18:19,524 | INFO     | all workflow threads have been joined
[2025-12-13 10:18:21] 2025-12-13 18:18:19,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 10:18:21] 2025-12-13 18:18:19,524 | INFO     | traces error code: 0
[2025-12-13 10:18:21] 2025-12-13 18:18:19,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 10:18:21] 2025-12-13 18:18:19,767 [wrapper] ==== pilot stdout END ====
[2025-12-13 10:18:21] 2025-12-13 18:18:19,777 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 10:18:21] 2025-12-13 18:18:19,782 [wrapper] pilotpid: 2013435
[2025-12-13 10:18:21] 2025-12-13 18:18:19,873 [wrapper] Pilot exit status: 0
[2025-12-13 10:18:21] 2025-12-13 18:18:19,948 [wrapper] pandaids: 6929300873
[2025-12-13 10:18:21] 2025-12-13 18:18:20,368 [wrapper] cleanup supervisor_pilot 2013441 2013436
[2025-12-13 10:18:21] 2025-12-13 18:18:20,377 [wrapper] Test setup, not cleaning
[2025-12-13 10:18:21] 2025-12-13 18:18:20,404 [wrapper] apfmon messages muted
[2025-12-13 10:18:21] 2025-12-13 18:18:20,422 [wrapper] ==== wrapper stdout END ====
[2025-12-13 10:18:21] 2025-12-13 18:18:20,429 [wrapper] ==== wrapper stderr END ====
[2025-12-13 10:18:21]  *** Error codes and diagnostics ***
[2025-12-13 10:18:21]     "exeErrorCode": 65,
[2025-12-13 10:18:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 10:18:21]     "pilotErrorCode": 1305,
[2025-12-13 10:18:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 10:18:21]  *** Listing of results directory ***
[2025-12-13 10:18:21] total 225604
[2025-12-13 10:18:21] -rwx------. 1 boinc boinc     36322 Dec 13 03:39 runpilot2-wrapper.sh
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc    579449 Dec 13 03:43 pilot3.tar.gz
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc      5112 Dec 13 03:43 queuedata.json
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc       100 Dec 13 10:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 10:18:21] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 10:10 run_atlas
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc       105 Dec 13 10:10 job.xml
[2025-12-13 10:18:21] -rw-r--r--. 2 boinc boinc 226855078 Dec 13 10:10 EVNT.47898761._000208.pool.root.1
[2025-12-13 10:18:21] -rw-r--r--. 2 boinc boinc     15847 Dec 13 10:10 start_atlas.sh
[2025-12-13 10:18:21] drwxrwx--x. 2 boinc boinc      4096 Dec 13 10:10 shared
[2025-12-13 10:18:21] -rw-r--r--. 2 boinc boinc    592398 Dec 13 10:10 input.tar.gz
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc      6596 Dec 13 10:10 init_data.xml
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc         0 Dec 13 10:10 boinc_lockfile
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc      2504 Dec 13 10:10 pandaJob.out
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc    991736 Dec 13 10:11 agis_schedconf.cvmfs.json
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc   1516240 Dec 13 10:11 agis_ddmendpoints.agis.ALL.json
[2025-12-13 10:18:21] drwx------. 5 boinc boinc      4096 Dec 13 10:11 pilot3
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc       957 Dec 13 10:15 memory_monitor_summary.json
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc     22921 Dec 13 10:15 log.47898763._003322.job.log.tgz.1
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc        95 Dec 13 10:17 pilot_heartbeat.json
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc      8390 Dec 13 10:17 heartbeat.json
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc      8192 Dec 13 10:17 boinc_mmap_file
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc        23 Dec 13 10:17 wrapper_checkpoint.txt
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc       525 Dec 13 10:18 boinc_task_state.xml
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc      4823 Dec 13 10:18 pilotlog.txt
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc    102748 Dec 13 10:18 log.47898763._003322.job.log.1
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc       188 Dec 13 10:18 output.list
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc       620 Dec 13 10:18 runtime_log
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc    143360 Dec 13 10:18 result.tar.gz
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc       646 Dec 13 10:18 SNXMDmM9co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpJPKDmYR8Mcm.diag
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc      8636 Dec 13 10:18 runtime_log.err
[2025-12-13 10:18:21] -rw-r--r--. 1 boinc boinc     21918 Dec 13 10:18 stderr.txt
[2025-12-13 10:18:21] No HITS result produced
[2025-12-13 10:18:21]  *** Contents of shared directory: ***
[2025-12-13 10:18:21] total 222276
[2025-12-13 10:18:21] -rw-r--r--. 2 boinc boinc 226855078 Dec 13 10:10 ATLAS.root_0
[2025-12-13 10:18:21] -rw-r--r--. 2 boinc boinc     15847 Dec 13 10:10 start_atlas.sh
[2025-12-13 10:18:21] -rw-r--r--. 2 boinc boinc    592398 Dec 13 10:10 input.tar.gz
[2025-12-13 10:18:21] -rw-------. 1 boinc boinc    143360 Dec 13 10:18 result.tar.gz
10:18:22 (2009236): run_atlas exited; CPU time 34.785170
10:18:22 (2009236): called boinc_finish(0)

</stderr_txt>
]]>

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