Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:52:47 (20862): wrapper (7.7.26015): starting
11:52:47 (20862): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 11:52:47] Arguments: --nthreads 8
[2025-12-13 11:52:47] Threads: 8
[2025-12-13 11:52:47] Checking for CVMFS
[2025-12-13 11:52:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 11:52:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 11:52:47] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 11:52:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 11:52:47] 2.11.2.0 2797 90459 81508 153967 1 57 12936842 20275201 1 130560 0 22861836 99.850 5207119 31796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 11:52:47] CVMFS is ok
[2025-12-13 11:52:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 11:52:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 11:52:47] Further information can be found at the LHC@home message board.
[2025-12-13 11:52:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 11:52:47] Checking for apptainer binary...
[2025-12-13 11:52:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 11:52:47] Running /usr/bin/apptainer --version
[2025-12-13 11:52:48] apptainer version 1.3.2-1.el7
[2025-12-13 11:52:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 11:52:49] c-204-11.aglt2.org
[2025-12-13 11:52:49] apptainer works
[2025-12-13 11:52:49] Set ATHENA_PROC_NUMBER=8
[2025-12-13 11:52:49] Set ATHENA_CORE_NUMBER=8
[2025-12-13 11:52:49] Starting ATLAS job with PandaID=6929262084
[2025-12-13 11:52:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 14:56:49]  *** The last 200 lines of the pilot log: ***
[2025-12-13 14:56:49] 2025-12-13 19:56:15,532 | INFO     | monitor loop #806: job 0:6929262084 is in state 'finished'
[2025-12-13 14:56:49] 2025-12-13 19:56:15,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 14:56:49] 2025-12-13 19:56:16,198 | INFO     | time since job start (10990s) is within the limit (174528.0s)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,304 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 14:56:49] 2025-12-13 19:56:17,308 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-12-13 14:56:49] 2025-12-13 19:56:17,310 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929262084/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,311 | INFO     | extracted standard info from prmon json
[2025-12-13 14:56:49] 2025-12-13 19:56:17,311 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 14:56:49] 2025-12-13 19:56:17,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 14:56:49] 2025-12-13 19:56:17,312 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 14:56:49] 2025-12-13 19:56:17,312 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 14:56:49] 2025-12-13 19:56:17,316 | INFO     | fitting pss+swap vs Time
[2025-12-13 14:56:49] 2025-12-13 19:56:17,316 | INFO     | sum of square deviations: 1808347074.9944415
[2025-12-13 14:56:49] 2025-12-13 19:56:17,317 | INFO     | sum of deviations: 727447753.3555489
[2025-12-13 14:56:49] 2025-12-13 19:56:17,317 | INFO     | mean x: 1765650276.5055556
[2025-12-13 14:56:49] 2025-12-13 19:56:17,318 | INFO     | mean y: 2487181.644444444
[2025-12-13 14:56:49] 2025-12-13 19:56:17,318 | INFO     | intersect: -707784836.7176933
[2025-12-13 14:56:49] 2025-12-13 19:56:17,318 | INFO     | chi2: 2.2896002192583116
[2025-12-13 14:56:49] 2025-12-13 19:56:17,318 | INFO     | sum of square deviations: 1661795794.9942875
[2025-12-13 14:56:49] 2025-12-13 19:56:17,319 | INFO     | sum of deviations: 12990539174.36571
[2025-12-13 14:56:49] 2025-12-13 19:56:17,320 | INFO     | mean x: 1765650124.0057142
[2025-12-13 14:56:49] 2025-12-13 19:56:17,320 | INFO     | mean y: 2499650.6342857145
[2025-12-13 14:56:49] 2025-12-13 19:56:17,320 | INFO     | intersect: -13799886402.580362
[2025-12-13 14:56:49] 2025-12-13 19:56:17,320 | INFO     | chi2: 1.4479866393085543
[2025-12-13 14:56:49] 2025-12-13 19:56:17,320 | INFO     | current chi2=1.4479866393085543 (change=36.758101823661946 %)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,321 | INFO     | sum of square deviations: 1523384202.494113
[2025-12-13 14:56:49] 2025-12-13 19:56:17,322 | INFO     | sum of deviations: 12558692651.294117
[2025-12-13 14:56:49] 2025-12-13 19:56:17,322 | INFO     | mean x: 1765649971.5058823
[2025-12-13 14:56:49] 2025-12-13 19:56:17,322 | INFO     | mean y: 2499174.705882353
[2025-12-13 14:56:49] 2025-12-13 19:56:17,322 | INFO     | intersect: -14553418686.070465
[2025-12-13 14:56:49] 2025-12-13 19:56:17,322 | INFO     | chi2: 1.449104797049654
[2025-12-13 14:56:49] 2025-12-13 19:56:17,322 | INFO     | current chi2=1.449104797049654 (change=-0.07722155099674367 %)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,323 | INFO     | right removable region: 169
[2025-12-13 14:56:49] 2025-12-13 19:56:17,323 | INFO     | sum of square deviations: 1661795184.9942875
[2025-12-13 14:56:49] 2025-12-13 19:56:17,324 | INFO     | sum of deviations: -23915354605.200005
[2025-12-13 14:56:49] 2025-12-13 19:56:17,324 | INFO     | mean x: 1765650429.0057142
[2025-12-13 14:56:49] 2025-12-13 19:56:17,324 | INFO     | mean y: 2512468.2
[2025-12-13 14:56:49] 2025-12-13 19:56:17,324 | INFO     | intersect: 25412476644.164516
[2025-12-13 14:56:49] 2025-12-13 19:56:17,325 | INFO     | chi2: 0.9833064933663143
[2025-12-13 14:56:49] 2025-12-13 19:56:17,325 | INFO     | current chi2=0.9833064933663143 (change=57.05335433253739 %)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,325 | INFO     | sum of square deviations: 1523382982.494113
[2025-12-13 14:56:49] 2025-12-13 19:56:17,326 | INFO     | sum of deviations: -21803792046.42353
[2025-12-13 14:56:49] 2025-12-13 19:56:17,326 | INFO     | mean x: 1765650581.5058823
[2025-12-13 14:56:49] 2025-12-13 19:56:17,326 | INFO     | mean y: 2510079.9235294117
[2025-12-13 14:56:49] 2025-12-13 19:56:17,327 | INFO     | intersect: 25273816473.783558
[2025-12-13 14:56:49] 2025-12-13 19:56:17,327 | INFO     | chi2: 0.9675935744401785
[2025-12-13 14:56:49] 2025-12-13 19:56:17,327 | INFO     | current chi2=0.9675935744401785 (change=1.5979675749260223 %)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,327 | INFO     | left removable region: 20
[2025-12-13 14:56:49] 2025-12-13 19:56:17,327 | INFO     | sum of square deviations: 1025689990.9932907
[2025-12-13 14:56:49] 2025-12-13 19:56:17,328 | INFO     | sum of deviations: 2284997370.9060397
[2025-12-13 14:56:49] 2025-12-13 19:56:17,328 | INFO     | mean x: 1765650551.0067115
[2025-12-13 14:56:49] 2025-12-13 19:56:17,328 | INFO     | mean y: 2508148.0939597315
[2025-12-13 14:56:49] 2025-12-13 19:56:17,329 | INFO     | intersect: -3930948259.2188096
[2025-12-13 14:56:49] 2025-12-13 19:56:17,329 | INFO     | chi2: 0.013771106242618392
[2025-12-13 14:56:49] 2025-12-13 19:56:17,329 | INFO     | current memory leak: 2.23 B/s (using 149 data points, chi2=0.01)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,329 | INFO     | could have reported an average CPU frequency of 2015 MHz (9 samples)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,330 | INFO     | ..............................
[2025-12-13 14:56:49] 2025-12-13 19:56:17,330 | INFO     | . Timing measurements:
[2025-12-13 14:56:49] 2025-12-13 19:56:17,330 | INFO     | . get job = 0 s
[2025-12-13 14:56:49] 2025-12-13 19:56:17,330 | INFO     | . initial setup = 2 s
[2025-12-13 14:56:49] 2025-12-13 19:56:17,330 | INFO     | . payload setup = 8 s
[2025-12-13 14:56:49] 2025-12-13 19:56:17,330 | INFO     | . stage-in = 0 s
[2025-12-13 14:56:49] 2025-12-13 19:56:17,330 | INFO     | . payload execution = 10951 s
[2025-12-13 14:56:49] 2025-12-13 19:56:17,330 | INFO     | . stage-out = 2 s
[2025-12-13 14:56:49] 2025-12-13 19:56:17,331 | INFO     | . log creation = 0 s
[2025-12-13 14:56:49] 2025-12-13 19:56:17,331 | INFO     | ..............................
[2025-12-13 14:56:49] 2025-12-13 19:56:17,685 | INFO     | 
[2025-12-13 14:56:49] 2025-12-13 19:56:17,688 | INFO     | job summary report
[2025-12-13 14:56:49] 2025-12-13 19:56:17,688 | INFO     | --------------------------------------------------
[2025-12-13 14:56:49] 2025-12-13 19:56:17,688 | INFO     | PanDA job id: 6929262084
[2025-12-13 14:56:49] 2025-12-13 19:56:17,689 | INFO     | task id: 47898763
[2025-12-13 14:56:49] 2025-12-13 19:56:17,689 | INFO     | errors: (none)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,689 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 14:56:49] 2025-12-13 19:56:17,689 | INFO     | pilot state: finished 
[2025-12-13 14:56:49] 2025-12-13 19:56:17,689 | INFO     | transexitcode: 0
[2025-12-13 14:56:49] 2025-12-13 19:56:17,690 | INFO     | exeerrorcode: 0
[2025-12-13 14:56:49] 2025-12-13 19:56:17,690 | INFO     | exeerrordiag: 
[2025-12-13 14:56:49] 2025-12-13 19:56:17,690 | INFO     | exitcode: 0
[2025-12-13 14:56:49] 2025-12-13 19:56:17,690 | INFO     | exitmsg: OK
[2025-12-13 14:56:49] 2025-12-13 19:56:17,690 | INFO     | cpuconsumptiontime: 80988 s
[2025-12-13 14:56:49] 2025-12-13 19:56:17,690 | INFO     | nevents: 400
[2025-12-13 14:56:49] 2025-12-13 19:56:17,691 | INFO     | neventsw: 0
[2025-12-13 14:56:49] 2025-12-13 19:56:17,691 | INFO     | pid: 31047
[2025-12-13 14:56:49] 2025-12-13 19:56:17,691 | INFO     | pgrp: 31047
[2025-12-13 14:56:49] 2025-12-13 19:56:17,691 | INFO     | corecount: 8
[2025-12-13 14:56:49] 2025-12-13 19:56:17,691 | INFO     | event service: False
[2025-12-13 14:56:49] 2025-12-13 19:56:17,691 | INFO     | sizes: {0: 2283945, 6: 2284207, 11: 2284235, 10963: 2313314, 10964: 2313313, 10966: 2322367, 10968: 2322551, 10975: 2322809}
[2025-12-13 14:56:49] 2025-12-13 19:56:17,692 | INFO     | --------------------------------------------------
[2025-12-13 14:56:49] 2025-12-13 19:56:17,692 | INFO     | 
[2025-12-13 14:56:49] 2025-12-13 19:56:17,692 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 14:56:49] 2025-12-13 19:56:17,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,720 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,720 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,721 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,721 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,721 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,721 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,722 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,722 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,722 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,722 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 14:56:49] 2025-12-13 19:56:17,722 | INFO     | job 6929262084 has completed (purged errors)
[2025-12-13 14:56:49] 2025-12-13 19:56:17,723 | INFO     | overall cleanup function is called
[2025-12-13 14:56:49] 2025-12-13 19:56:18,727 | INFO     | --- collectZombieJob: --- 10, [31047]
[2025-12-13 14:56:49] 2025-12-13 19:56:18,727 | INFO     | zombie collector waiting for pid 31047
[2025-12-13 14:56:49] 2025-12-13 19:56:18,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 14:56:49] 2025-12-13 19:56:18,728 | INFO     | collected zombie processes
[2025-12-13 14:56:49] 2025-12-13 19:56:18,728 | INFO     | will attempt to kill all subprocesses of pid=31047
[2025-12-13 14:56:49] 2025-12-13 19:56:18,820 | INFO     | process IDs to be killed: [31047] (in reverse order)
[2025-12-13 14:56:49] 2025-12-13 19:56:18,877 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 14:56:49] 2025-12-13 19:56:18,878 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 14:56:49] 2025-12-13 19:56:18,882 | INFO     | did not find any defunct processes belonging to 31047
[2025-12-13 14:56:49] 2025-12-13 19:56:18,885 | INFO     | did not find any defunct processes belonging to 31047
[2025-12-13 14:56:49] 2025-12-13 19:56:18,886 | INFO     | ready for new job
[2025-12-13 14:56:49] 2025-12-13 19:56:18,886 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 14:56:49] 2025-12-13 19:56:18,888 | INFO     | ***************************************
[2025-12-13 14:56:49] 2025-12-13 19:56:18,888 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 14:56:49] 2025-12-13 19:56:18,888 | INFO     | ***************************************
[2025-12-13 14:56:49] 2025-12-13 19:56:18,888 | INFO     | 
[2025-12-13 14:56:49] 2025-12-13 19:56:18,889 | INFO     | architecture information:
[2025-12-13 14:56:49] 2025-12-13 19:56:18,889 | INFO     | executing command: cat /etc/os-release
[2025-12-13 14:56:49] 2025-12-13 19:56:18,906 | INFO     | cat /etc/os-release:
[2025-12-13 14:56:49] NAME="CentOS Linux"
[2025-12-13 14:56:49] VERSION="7 (Core)"
[2025-12-13 14:56:49] ID="centos"
[2025-12-13 14:56:49] ID_LIKE="rhel fedora"
[2025-12-13 14:56:49] VERSION_ID="7"
[2025-12-13 14:56:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 14:56:49] ANSI_COLOR="0;31"
[2025-12-13 14:56:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 14:56:49] HOME_URL="https://www.centos.org/"
[2025-12-13 14:56:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 14:56:49] 
[2025-12-13 14:56:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 14:56:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 14:56:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 14:56:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 14:56:49] 
[2025-12-13 14:56:49] 2025-12-13 19:56:18,907 | INFO     | ***************************************
[2025-12-13 14:56:49] 2025-12-13 19:56:19,411 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 14:56:49] 2025-12-13 19:56:19,431 | INFO     | sufficient remaining disk space (18539872256 B)
[2025-12-13 14:56:49] 2025-12-13 19:56:19,431 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 14:56:49] 2025-12-13 19:56:19,432 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 14:56:49] 2025-12-13 19:56:19,432 | INFO     | update_server=False
[2025-12-13 14:56:49] 2025-12-13 19:56:19,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 14:56:49] 2025-12-13 19:56:19,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 14:56:49] 2025-12-13 19:56:19,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 14:56:49] 2025-12-13 19:56:19,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 14:56:49] 2025-12-13 19:56:19,434 | INFO     | aborting loop
[2025-12-13 14:56:49] 2025-12-13 19:56:19,616 | INFO     | all payload control threads have been joined
[2025-12-13 14:56:49] 2025-12-13 19:56:20,230 | INFO     | all data control threads have been joined
[2025-12-13 14:56:49] 2025-12-13 19:56:20,438 | INFO     | [job] retrieve thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:20,438 | INFO     | [job] queue monitor thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:20,439 | INFO     | [job] job monitor thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:20,518 | INFO     | all job control threads have been joined
[2025-12-13 14:56:49] 2025-12-13 19:56:20,622 | INFO     | [payload] control thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:20,906 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,235 | INFO     | [data] control thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,398 | INFO     | [data] copytool_in thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,436 | INFO     | [data] copytool_out thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,523 | INFO     | [job] control thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,617 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,620 | INFO     | [job] validate thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,627 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:21,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 14:56:49] 2025-12-13 19:56:21,892 | INFO     | [payload] validate_post thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:22,007 | INFO     | [payload] failed_post thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:23,497 | INFO     | [monitor] cgroup control has ended
[2025-12-13 14:56:49] 2025-12-13 19:56:25,831 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 14:56:49] 2025-12-13 19:56:26,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139684115625792)>', '<ExcThread(monitor, started 139683375855360)>']
[2025-12-13 14:56:49] 2025-12-13 19:56:31,700 | INFO     | all workflow threads have been joined
[2025-12-13 14:56:49] 2025-12-13 19:56:31,700 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 14:56:49] 2025-12-13 19:56:31,701 | INFO     | traces error code: 0
[2025-12-13 14:56:49] 2025-12-13 19:56:31,701 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 14:56:49] 2025-12-13 19:56:49,409 | INFO     | PID=24601 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 14:56:49] 2025-12-13 19:56:49,410 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 14:56:49] 2025-12-13 19:56:49,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 14:56:49] 2025-12-13 19:56:49,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 14:56:49] 2025-12-13 19:56:49,410 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 14:56:49] 2025-12-13 19:56:49,410 | INFO     | [monitor] control thread has ended
[2025-12-13 14:56:49] 2025-12-13 19:56:49,529 [wrapper] ==== pilot stdout END ====
[2025-12-13 14:56:49] 2025-12-13 19:56:49,534 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 14:56:49] 2025-12-13 19:56:49,538 [wrapper] pilotpid: 24601
[2025-12-13 14:56:49] 2025-12-13 19:56:49,543 [wrapper] Pilot exit status: 0
[2025-12-13 14:56:49] 2025-12-13 19:56:49,575 [wrapper] pandaids: 6929262084
[2025-12-13 14:56:49] 2025-12-13 19:56:49,619 [wrapper] cleanup supervisor_pilot 32000 24602
[2025-12-13 14:56:49] 2025-12-13 19:56:49,623 [wrapper] Test setup, not cleaning
[2025-12-13 14:56:49] 2025-12-13 19:56:49,628 [wrapper] apfmon messages muted
[2025-12-13 14:56:49] 2025-12-13 19:56:49,632 [wrapper] ==== wrapper stdout END ====
[2025-12-13 14:56:49] 2025-12-13 19:56:49,636 [wrapper] ==== wrapper stderr END ====
[2025-12-13 14:56:49]  *** Error codes and diagnostics ***
[2025-12-13 14:56:49]     "exeErrorCode": 0,
[2025-12-13 14:56:49]     "exeErrorDiag": "",
[2025-12-13 14:56:49]     "pilotErrorCode": 0,
[2025-12-13 14:56:49]     "pilotErrorDiag": "",
[2025-12-13 14:56:49]  *** Listing of results directory ***
[2025-12-13 14:56:49] total 442316
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 04:30 queuedata.json
[2025-12-13 14:56:49] -rwx------ 1 boincer umatlas     36322 Dec 13 04:31 runpilot2-wrapper.sh
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas       100 Dec 13 11:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 14:56:49] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 11:52 run_atlas
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas       105 Dec 13 11:52 job.xml
[2025-12-13 14:56:49] -rw-r--r-- 2 boincer umatlas 222660876 Dec 13 11:52 EVNT.47898761._000036.pool.root.1
[2025-12-13 14:56:49] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 11:52 start_atlas.sh
[2025-12-13 14:56:49] drwxrwx--x 2 boincer umatlas      4096 Dec 13 11:52 shared
[2025-12-13 14:56:49] -rw-r--r-- 2 boincer umatlas    592389 Dec 13 11:52 input.tar.gz
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas         0 Dec 13 11:52 boinc_lockfile
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas      2501 Dec 13 11:52 pandaJob.out
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas        57 Dec 13 11:52 setup.sh.local
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas    991728 Dec 13 11:53 agis_schedconf.cvmfs.json
[2025-12-13 14:56:49] drwx------ 5 boincer umatlas      4096 Dec 13 11:53 pilot3
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas      5911 Dec 13 14:54 init_data.xml
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas 222503721 Dec 13 14:55 HITS.47898763._000877.pool.root.1
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas       531 Dec 13 14:55 boinc_task_state.xml
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas      1061 Dec 13 14:56 memory_monitor_summary.json
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas   1516240 Dec 13 14:56 agis_ddmendpoints.agis.ALL.json
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas    401902 Dec 13 14:56 log.47898763._000877.job.log.tgz.1
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas      7853 Dec 13 14:56 heartbeat.json
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 14:56 boinc_mmap_file
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas        28 Dec 13 14:56 wrapper_checkpoint.txt
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas        95 Dec 13 14:56 pilot_heartbeat.json
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas       745 Dec 13 14:56 pilotlog.txt
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas   1519987 Dec 13 14:56 log.47898763._000877.job.log.1
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas       357 Dec 13 14:56 output.list
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas       620 Dec 13 14:56 runtime_log
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas   1945600 Dec 13 14:56 result.tar.gz
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas       662 Dec 13 14:56 tPiLDm28ao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeVOKDmAVFbEm.diag
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas      9343 Dec 13 14:56 runtime_log.err
[2025-12-13 14:56:49] -rw-r--r-- 1 boincer umatlas     21178 Dec 13 14:56 stderr.txt
[2025-12-13 14:56:49] HITS file was successfully produced:
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas 222503721 Dec 13 14:55 shared/HITS.pool.root.1
[2025-12-13 14:56:49]  *** Contents of shared directory: ***
[2025-12-13 14:56:49] total 437236
[2025-12-13 14:56:49] -rw-r--r-- 2 boincer umatlas 222660876 Dec 13 11:52 ATLAS.root_0
[2025-12-13 14:56:49] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 11:52 start_atlas.sh
[2025-12-13 14:56:49] -rw-r--r-- 2 boincer umatlas    592389 Dec 13 11:52 input.tar.gz
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas 222503721 Dec 13 14:55 HITS.pool.root.1
[2025-12-13 14:56:49] -rw------- 1 boincer umatlas   1945600 Dec 13 14:56 result.tar.gz
14:56:51 (20862): run_atlas exited; CPU time 80903.126085
14:56:51 (20862): called boinc_finish(0)

</stderr_txt>
]]>

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