Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:21:02 (1540067): wrapper (7.7.26015): starting
12:21:02 (1540067): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 12:21:02] Arguments: --nthreads 8
[2025-12-13 12:21:02] Threads: 8
[2025-12-13 12:21:02] Checking for CVMFS
[2025-12-13 12:21:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 12:21:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 12:21:03] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 12:21:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 12:21:05] 2.13.2.0 6383 59121 249756 153968 3 65 34124822 40960000 11787 16776704 0 73763177 99.730 47429705 37081 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 12:21:05] CVMFS is ok
[2025-12-13 12:21:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 12:21:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 12:21:05] Further information can be found at the LHC@home message board.
[2025-12-13 12:21:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 12:21:05] Checking for apptainer binary...
[2025-12-13 12:21:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 12:21:05] Running /usr/bin/apptainer --version
[2025-12-13 12:21:05] apptainer version 1.4.4-1.el9
[2025-12-13 12:21:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 12:21:25] c-210-37-2.aglt2.org
[2025-12-13 12:21:25] apptainer works
[2025-12-13 12:21:25] Set ATHENA_PROC_NUMBER=8
[2025-12-13 12:21:25] Set ATHENA_CORE_NUMBER=8
[2025-12-13 12:21:25] Starting ATLAS job with PandaID=6929302887
[2025-12-13 12:21:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 20:04:27]  *** The last 200 lines of the pilot log: ***
[2025-12-13 20:04:27] 2025-12-14 01:03:49,921 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 20:04:27] 2025-12-14 01:03:50,944 | INFO     | PID=1544717 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 20:04:27] 2025-12-14 01:03:50,944 | INFO     | .. there are 9 such processes running
[2025-12-13 20:04:27] 2025-12-14 01:03:50,974 | INFO     | monitor loop #1794: job 0:6929302887 is in state 'finished'
[2025-12-13 20:04:27] 2025-12-14 01:03:50,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:04:27] 2025-12-14 01:03:51,945 | INFO     | time since job start (27688s) is within the limit (174528.0s)
[2025-12-13 20:04:27] 2025-12-14 01:03:53,478 | INFO     | monitor loop #1795: job 0:6929302887 is in state 'finished'
[2025-12-13 20:04:27] 2025-12-14 01:03:53,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 20:04:27] 2025-12-14 01:03:53,962 | INFO     | time since job start (27690s) is within the limit (174528.0s)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,124 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 20:04:27] 2025-12-14 01:03:55,126 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2738.4526428571435
[2025-12-13 20:04:27] 2025-12-14 01:03:55,132 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6929302887/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,132 | INFO     | extracted standard info from prmon json
[2025-12-13 20:04:27] 2025-12-14 01:03:55,133 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 20:04:27] 2025-12-14 01:03:55,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 20:04:27] 2025-12-14 01:03:55,133 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 20:04:27] 2025-12-14 01:03:55,133 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 20:04:27] 2025-12-14 01:03:55,137 | INFO     | fitting pss+swap vs Time
[2025-12-13 20:04:27] 2025-12-14 01:03:55,137 | INFO     | sum of square deviations: 28633808164.035313
[2025-12-13 20:04:27] 2025-12-14 01:03:55,139 | INFO     | sum of deviations: -73894548445.30977
[2025-12-13 20:04:27] 2025-12-14 01:03:55,140 | INFO     | mean x: 1765660418.8672566
[2025-12-13 20:04:27] 2025-12-14 01:03:55,140 | INFO     | mean y: 2543542.1615044246
[2025-12-13 20:04:27] 2025-12-14 01:03:55,140 | INFO     | intersect: 4559138969.933804
[2025-12-13 20:04:27] 2025-12-14 01:03:55,140 | INFO     | chi2: 2.2888338184584116
[2025-12-13 20:04:27] 2025-12-14 01:03:55,140 | INFO     | sum of square deviations: 27694064428.353317
[2025-12-13 20:04:27] 2025-12-14 01:03:55,143 | INFO     | sum of deviations: -73565956854.58617
[2025-12-13 20:04:27] 2025-12-14 01:03:55,143 | INFO     | mean x: 1765660266.3713646
[2025-12-13 20:04:27] 2025-12-14 01:03:55,143 | INFO     | mean y: 2543595.485458613
[2025-12-13 20:04:27] 2025-12-14 01:03:55,143 | INFO     | intersect: 4692808085.617444
[2025-12-13 20:04:27] 2025-12-14 01:03:55,143 | INFO     | chi2: 2.2869563806311026
[2025-12-13 20:04:27] 2025-12-14 01:03:55,143 | INFO     | current chi2=2.2869563806311026 (change=0.08202595628255281 %)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,143 | INFO     | right removable region: 446
[2025-12-13 20:04:27] 2025-12-14 01:03:55,144 | INFO     | sum of square deviations: 27694017945.830036
[2025-12-13 20:04:27] 2025-12-14 01:03:55,146 | INFO     | sum of deviations: -155907492035.01566
[2025-12-13 20:04:27] 2025-12-14 01:03:55,146 | INFO     | mean x: 1765660571.3668904
[2025-12-13 20:04:27] 2025-12-14 01:03:55,146 | INFO     | mean y: 2556794.8232662193
[2025-12-13 20:04:27] 2025-12-14 01:03:55,146 | INFO     | intersect: 9942599153.62351
[2025-12-13 20:04:27] 2025-12-14 01:03:55,146 | INFO     | chi2: 0.5908300984976509
[2025-12-13 20:04:27] 2025-12-14 01:03:55,146 | INFO     | current chi2=0.5908300984976509 (change=74.18641345942756 %)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,147 | INFO     | sum of square deviations: 26775046325.85519
[2025-12-13 20:04:27] 2025-12-14 01:03:55,149 | INFO     | sum of deviations: -159164080321.46597
[2025-12-13 20:04:27] 2025-12-14 01:03:55,149 | INFO     | mean x: 1765660723.8642533
[2025-12-13 20:04:27] 2025-12-14 01:03:55,149 | INFO     | mean y: 2557329.375565611
[2025-12-13 20:04:27] 2025-12-14 01:03:55,149 | INFO     | intersect: 10498515463.431631
[2025-12-13 20:04:27] 2025-12-14 01:03:55,149 | INFO     | chi2: 0.5715460410258562
[2025-12-13 20:04:27] 2025-12-14 01:03:55,149 | INFO     | current chi2=0.5715460410258562 (change=3.2638921952063358 %)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,150 | INFO     | left removable region: 20
[2025-12-13 20:04:27] 2025-12-14 01:03:55,150 | INFO     | sum of square deviations: 23971335225.373127
[2025-12-13 20:04:27] 2025-12-14 01:03:55,152 | INFO     | sum of deviations: -123616390477.9508
[2025-12-13 20:04:27] 2025-12-14 01:03:55,152 | INFO     | mean x: 1765660845.866197
[2025-12-13 20:04:27] 2025-12-14 01:03:55,152 | INFO     | mean y: 2551546.579812207
[2025-12-13 20:04:27] 2025-12-14 01:03:55,152 | INFO     | intersect: 9107785715.73016
[2025-12-13 20:04:27] 2025-12-14 01:03:55,152 | INFO     | chi2: 0.501873816028461
[2025-12-13 20:04:27] 2025-12-14 01:03:55,152 | INFO     | current memory leak: -5.16 B/s (using 426 data points, chi2=0.50)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | could have reported an average CPU frequency of 2693 MHz (19 samples)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | ..............................
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | . Timing measurements:
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | . get job = 0 s
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | . initial setup = 6 s
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | . payload setup = 35 s
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | . stage-in = 0 s
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | . payload execution = 27582 s
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | . stage-out = 2 s
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | . log creation = 0 s
[2025-12-13 20:04:27] 2025-12-14 01:03:55,153 | INFO     | ..............................
[2025-12-13 20:04:27] 2025-12-14 01:03:55,198 | INFO     | 
[2025-12-13 20:04:27] 2025-12-14 01:03:55,198 | INFO     | job summary report
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | --------------------------------------------------
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | PanDA job id: 6929302887
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | task id: 47898763
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | errors: (none)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | pilot state: finished 
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | transexitcode: 0
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | exeerrorcode: 0
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | exeerrordiag: 
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | exitcode: 0
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | exitmsg: OK
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | cpuconsumptiontime: 59461 s
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | nevents: 400
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | neventsw: 0
[2025-12-13 20:04:27] 2025-12-14 01:03:55,199 | INFO     | pid: 1553553
[2025-12-13 20:04:27] 2025-12-14 01:03:55,200 | INFO     | pgrp: 1553553
[2025-12-13 20:04:27] 2025-12-14 01:03:55,200 | INFO     | corecount: 8
[2025-12-13 20:04:27] 2025-12-14 01:03:55,200 | INFO     | event service: False
[2025-12-13 20:04:27] 2025-12-14 01:03:55,200 | INFO     | sizes: {0: 2283725, 1: 2283809, 2: 2283980, 13: 2284008, 24: 2284064, 32: 2284354, 34: 2284510, 27622: 2321494, 27624: 2330520, 27628: 2330576, 27633: 2330770}
[2025-12-13 20:04:27] 2025-12-14 01:03:55,200 | INFO     | --------------------------------------------------
[2025-12-13 20:04:27] 2025-12-14 01:03:55,200 | INFO     | 
[2025-12-13 20:04:27] 2025-12-14 01:03:55,200 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-13 20:04:27] 2025-12-14 01:03:55,214 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,214 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 20:04:27] 2025-12-14 01:03:55,215 | INFO     | job 6929302887 has completed (purged errors)
[2025-12-13 20:04:27] 2025-12-14 01:03:55,216 | INFO     | overall cleanup function is called
[2025-12-13 20:04:27] 2025-12-14 01:03:56,223 | INFO     | --- collectZombieJob: --- 10, [1553553]
[2025-12-13 20:04:27] 2025-12-14 01:03:56,223 | INFO     | zombie collector waiting for pid 1553553
[2025-12-13 20:04:27] 2025-12-14 01:03:56,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 20:04:27] 2025-12-14 01:03:56,224 | INFO     | collected zombie processes
[2025-12-13 20:04:27] 2025-12-14 01:03:56,224 | INFO     | will attempt to kill all subprocesses of pid=1553553
[2025-12-13 20:04:27] 2025-12-14 01:03:56,433 | INFO     | process IDs to be killed: [1553553] (in reverse order)
[2025-12-13 20:04:27] 2025-12-14 01:03:56,502 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 20:04:27] 2025-12-14 01:03:56,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 20:04:27] 2025-12-14 01:03:56,510 | INFO     | did not find any defunct processes belonging to 1553553
[2025-12-13 20:04:27] 2025-12-14 01:03:56,518 | INFO     | did not find any defunct processes belonging to 1553553
[2025-12-13 20:04:27] 2025-12-14 01:03:56,518 | INFO     | ready for new job
[2025-12-13 20:04:27] 2025-12-14 01:03:56,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 20:04:27] 2025-12-14 01:03:56,522 | INFO     | ***************************************
[2025-12-13 20:04:27] 2025-12-14 01:03:56,522 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 20:04:27] 2025-12-14 01:03:56,522 | INFO     | ***************************************
[2025-12-13 20:04:27] 2025-12-14 01:03:56,522 | INFO     | 
[2025-12-13 20:04:27] 2025-12-14 01:03:56,525 | INFO     | architecture information:
[2025-12-13 20:04:27] 2025-12-14 01:03:56,525 | INFO     | executing command: cat /etc/os-release
[2025-12-13 20:04:27] 2025-12-14 01:03:56,545 | INFO     | cat /etc/os-release:
[2025-12-13 20:04:27] NAME="CentOS Linux"
[2025-12-13 20:04:27] VERSION="7 (Core)"
[2025-12-13 20:04:27] ID="centos"
[2025-12-13 20:04:27] ID_LIKE="rhel fedora"
[2025-12-13 20:04:27] VERSION_ID="7"
[2025-12-13 20:04:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 20:04:27] ANSI_COLOR="0;31"
[2025-12-13 20:04:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 20:04:27] HOME_URL="https://www.centos.org/"
[2025-12-13 20:04:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 20:04:27] 
[2025-12-13 20:04:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 20:04:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 20:04:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 20:04:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 20:04:27] 
[2025-12-13 20:04:27] 2025-12-14 01:03:56,546 | INFO     | ***************************************
[2025-12-13 20:04:27] 2025-12-14 01:03:57,048 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-13 20:04:27] 2025-12-14 01:03:57,062 | INFO     | sufficient remaining disk space (74750885888 B)
[2025-12-13 20:04:27] 2025-12-14 01:03:57,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 20:04:27] 2025-12-14 01:03:57,063 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 20:04:27] 2025-12-14 01:03:57,063 | INFO     | update_server=False
[2025-12-13 20:04:27] 2025-12-14 01:03:57,063 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 20:04:27] 2025-12-14 01:03:57,063 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 20:04:27] 2025-12-14 01:03:57,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 20:04:27] 2025-12-14 01:03:57,064 | INFO     | aborting loop
[2025-12-13 20:04:27] 2025-12-14 01:03:57,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 20:04:27] 2025-12-14 01:03:57,327 | INFO     | all data control threads have been joined
[2025-12-13 20:04:27] 2025-12-14 01:03:58,068 | INFO     | [job] retrieve thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:58,069 | INFO     | [job] queue monitor thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:58,069 | INFO     | [job] job monitor thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:58,108 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:58,111 | INFO     | [payload] validate_post thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:58,173 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:58,242 | INFO     | all job control threads have been joined
[2025-12-13 20:04:27] 2025-12-14 01:03:58,332 | INFO     | [data] control thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:58,394 | INFO     | all payload control threads have been joined
[2025-12-13 20:04:27] 2025-12-14 01:03:58,675 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:58,894 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:59,069 | INFO     | [data] copytool_out thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:59,247 | INFO     | [job] control thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:59,259 | INFO     | [payload] failed_post thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:59,400 | INFO     | [payload] control thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:59,489 | INFO     | [job] validate thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:03:59,533 | INFO     | [data] copytool_in thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:04:00,389 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 20:04:27] 2025-12-14 01:04:04,403 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 20:04:27] 2025-12-14 01:04:11,747 | INFO     | [monitor] cgroup control has ended
[2025-12-13 20:04:27] 2025-12-14 01:04:12,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695954810688)>', '<ExcThread(monitor, started 139695455450880)>']
[2025-12-13 20:04:27] 2025-12-14 01:04:17,992 | INFO     | all workflow threads have been joined
[2025-12-13 20:04:27] 2025-12-14 01:04:17,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 20:04:27] 2025-12-14 01:04:17,993 | INFO     | traces error code: 0
[2025-12-13 20:04:27] 2025-12-14 01:04:17,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 20:04:27] 2025-12-14 01:04:27,162 | INFO     | PID=1544717 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 20:04:27] 2025-12-14 01:04:27,162 | INFO     | .. there are 8 such processes running
[2025-12-13 20:04:27] 2025-12-14 01:04:27,162 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 20:04:27] 2025-12-14 01:04:27,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 20:04:27] 2025-12-14 01:04:27,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 20:04:27] 2025-12-14 01:04:27,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 20:04:27] 2025-12-14 01:04:27,163 | INFO     | [monitor] control thread has ended
[2025-12-13 20:04:27] 2025-12-14 01:04:27,309 [wrapper] ==== pilot stdout END ====
[2025-12-13 20:04:27] 2025-12-14 01:04:27,312 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 20:04:27] 2025-12-14 01:04:27,315 [wrapper] pilotpid: 1544717
[2025-12-13 20:04:27] 2025-12-14 01:04:27,317 [wrapper] Pilot exit status: 0
[2025-12-13 20:04:27] 2025-12-14 01:04:27,327 [wrapper] pandaids: 6929302887
[2025-12-13 20:04:27] 2025-12-14 01:04:27,371 [wrapper] cleanup supervisor_pilot 2413691 1544718
[2025-12-13 20:04:27] 2025-12-14 01:04:27,374 [wrapper] Test setup, not cleaning
[2025-12-13 20:04:27] 2025-12-14 01:04:27,377 [wrapper] apfmon messages muted
[2025-12-13 20:04:27] 2025-12-14 01:04:27,379 [wrapper] ==== wrapper stdout END ====
[2025-12-13 20:04:27] 2025-12-14 01:04:27,381 [wrapper] ==== wrapper stderr END ====
[2025-12-13 20:04:27]  *** Error codes and diagnostics ***
[2025-12-13 20:04:27]     "exeErrorCode": 0,
[2025-12-13 20:04:27]     "exeErrorDiag": "",
[2025-12-13 20:04:27]     "pilotErrorCode": 0,
[2025-12-13 20:04:27]     "pilotErrorDiag": "",
[2025-12-13 20:04:27]  *** Listing of results directory ***
[2025-12-13 20:04:27] total 443884
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 06:35 pilot3.tar.gz
[2025-12-13 20:04:27] -rwx------. 1 boincer umatlas     36322 Dec 13 06:37 runpilot2-wrapper.sh
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 06:40 queuedata.json
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas       100 Dec 13 12:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 20:04:27] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 12:21 run_atlas
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas       105 Dec 13 12:21 job.xml
[2025-12-13 20:04:27] -rw-r--r--. 2 boincer umatlas 221364324 Dec 13 12:21 EVNT.47898761._000266.pool.root.1
[2025-12-13 20:04:27] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 12:21 start_atlas.sh
[2025-12-13 20:04:27] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 12:21 shared
[2025-12-13 20:04:27] -rw-r--r--. 2 boincer umatlas    592393 Dec 13 12:21 input.tar.gz
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas         0 Dec 13 12:21 boinc_lockfile
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas      2504 Dec 13 12:21 pandaJob.out
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas        57 Dec 13 12:21 setup.sh.local
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas    991736 Dec 13 12:22 agis_schedconf.cvmfs.json
[2025-12-13 20:04:27] drwx------. 5 boincer umatlas      4096 Dec 13 12:22 pilot3
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas      6845 Dec 13 20:00 init_data.xml
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas 220730834 Dec 13 20:03 HITS.47898763._004773.pool.root.1
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas       531 Dec 13 20:03 boinc_task_state.xml
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas      1041 Dec 13 20:03 memory_monitor_summary.json
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas   1516240 Dec 13 20:03 agis_ddmendpoints.agis.ALL.json
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas    647453 Dec 13 20:03 log.47898763._004773.job.log.tgz.1
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas        95 Dec 13 20:03 pilot_heartbeat.json
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas      7823 Dec 13 20:03 heartbeat.json
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas        28 Dec 13 20:04 wrapper_checkpoint.txt
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 20:04 boinc_mmap_file
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas       822 Dec 13 20:04 pilotlog.txt
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas   3614512 Dec 13 20:04 log.47898763._004773.job.log.1
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas       357 Dec 13 20:04 output.list
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas       620 Dec 13 20:04 runtime_log
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas   4280320 Dec 13 20:04 result.tar.gz
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas      9353 Dec 13 20:04 runtime_log.err
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas       659 Dec 13 20:04 88CODmT7co8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoKTKDmAPpnsn.diag
[2025-12-13 20:04:27] -rw-r--r--. 1 boincer umatlas     21619 Dec 13 20:04 stderr.txt
[2025-12-13 20:04:27] HITS file was successfully produced:
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas 220730834 Dec 13 20:03 shared/HITS.pool.root.1
[2025-12-13 20:04:27]  *** Contents of shared directory: ***
[2025-12-13 20:04:27] total 436520
[2025-12-13 20:04:27] -rw-r--r--. 2 boincer umatlas 221364324 Dec 13 12:21 ATLAS.root_0
[2025-12-13 20:04:27] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 12:21 start_atlas.sh
[2025-12-13 20:04:27] -rw-r--r--. 2 boincer umatlas    592393 Dec 13 12:21 input.tar.gz
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas 220730834 Dec 13 20:03 HITS.pool.root.1
[2025-12-13 20:04:27] -rw-------. 1 boincer umatlas   4280320 Dec 13 20:04 result.tar.gz
20:04:29 (1540067): run_atlas exited; CPU time 60129.909156
20:04:29 (1540067): called boinc_finish(0)

</stderr_txt>
]]>

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