Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:05:54 (655206): wrapper (7.7.26015): starting
00:05:54 (655206): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 00:05:54] Arguments: --nthreads 4
[2025-12-14 00:05:54] Threads: 4
[2025-12-14 00:05:54] Checking for CVMFS
[2025-12-14 00:05:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-14 00:05:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-14 00:05:54] Running cvmfs_config stat atlas.cern.ch
[2025-12-14 00:05:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-14 00:05:55] 2.9.2.0 362371 976 81200 153976 1 56 19769912 36864000 0 130560 0 762162 99.990 38237 19750 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-14 00:05:55] CVMFS is ok
[2025-12-14 00:05:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 00:05:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 00:05:55] Further information can be found at the LHC@home message board.
[2025-12-14 00:05:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 00:05:55] Checking for apptainer binary...
[2025-12-14 00:05:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-14 00:05:55] Running /usr/bin/apptainer --version
[2025-12-14 00:05:55] apptainer version 1.4.1-1.1
[2025-12-14 00:05:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 00:05:55] thA319a
[2025-12-14 00:05:55] apptainer works
[2025-12-14 00:05:55] Set ATHENA_PROC_NUMBER=4
[2025-12-14 00:05:55] Set ATHENA_CORE_NUMBER=4
[2025-12-14 00:05:55] Starting ATLAS job with PandaID=6929299150
[2025-12-14 00:05:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 01:44:16]  *** The last 200 lines of the pilot log: ***
[2025-12-14 01:44:16] 2025-12-14 00:43:45,195 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 01:44:16] 2025-12-14 00:43:45,195 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 01:44:16] 2025-12-14 00:43:45,195 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 01:44:16] 2025-12-14 00:43:45,195 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 01:44:16] 2025-12-14 00:43:45,195 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 01:44:16] 2025-12-14 00:43:45,195 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 01:44:16] 2025-12-14 00:43:45,195 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 01:44:16] 2025-12-14 00:43:45,195 | INFO     | job 6929299150 has completed (purged errors)
[2025-12-14 01:44:16] 2025-12-14 00:43:45,196 | INFO     | overall cleanup function is called
[2025-12-14 01:44:16] 2025-12-14 00:43:46,202 | INFO     | --- collectZombieJob: --- 10, [665585]
[2025-12-14 01:44:16] 2025-12-14 00:43:46,203 | INFO     | zombie collector waiting for pid 665585
[2025-12-14 01:44:16] 2025-12-14 00:43:46,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 01:44:16] 2025-12-14 00:43:46,203 | INFO     | collected zombie processes
[2025-12-14 01:44:16] 2025-12-14 00:43:46,203 | INFO     | will attempt to kill all subprocesses of pid=665585
[2025-12-14 01:44:16] 2025-12-14 00:43:46,248 | INFO     | process IDs to be killed: [665585] (in reverse order)
[2025-12-14 01:44:16] 2025-12-14 00:43:46,282 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 01:44:16] 2025-12-14 00:43:46,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 01:44:16] 2025-12-14 00:43:46,284 | INFO     | did not find any defunct processes belonging to 665585
[2025-12-14 01:44:16] 2025-12-14 00:43:46,285 | INFO     | did not find any defunct processes belonging to 665585
[2025-12-14 01:44:16] 2025-12-14 00:43:46,285 | INFO     | ready for new job
[2025-12-14 01:44:16] 2025-12-14 00:43:46,285 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 01:44:16] 2025-12-14 00:43:46,286 | INFO     | ***************************************
[2025-12-14 01:44:16] 2025-12-14 00:43:46,286 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 01:44:16] 2025-12-14 00:43:46,286 | INFO     | ***************************************
[2025-12-14 01:44:16] 2025-12-14 00:43:46,286 | INFO     | 
[2025-12-14 01:44:16] 2025-12-14 00:43:46,287 | INFO     | architecture information:
[2025-12-14 01:44:16] 2025-12-14 00:43:46,287 | INFO     | executing command: cat /etc/os-release
[2025-12-14 01:44:16] 2025-12-14 00:43:46,301 | INFO     | cat /etc/os-release:
[2025-12-14 01:44:16] NAME="CentOS Linux"
[2025-12-14 01:44:16] VERSION="7 (Core)"
[2025-12-14 01:44:16] ID="centos"
[2025-12-14 01:44:16] ID_LIKE="rhel fedora"
[2025-12-14 01:44:16] VERSION_ID="7"
[2025-12-14 01:44:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 01:44:16] ANSI_COLOR="0;31"
[2025-12-14 01:44:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 01:44:16] HOME_URL="https://www.centos.org/"
[2025-12-14 01:44:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 01:44:16] 
[2025-12-14 01:44:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 01:44:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 01:44:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 01:44:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 01:44:16] 
[2025-12-14 01:44:16] 2025-12-14 00:43:46,301 | INFO     | ***************************************
[2025-12-14 01:44:16] 2025-12-14 00:43:46,804 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-14 01:44:16] 2025-12-14 00:43:46,823 | INFO     | sufficient remaining disk space (341117501440 B)
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | INFO     | update_server=False
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | INFO     | aborting loop
[2025-12-14 01:44:16] 2025-12-14 00:43:46,824 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 01:44:16] 2025-12-14 00:43:47,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 01:44:16] 2025-12-14 00:43:47,648 | INFO     | all data control threads have been joined
[2025-12-14 01:44:16] 2025-12-14 00:43:47,725 | INFO     | all job control threads have been joined
[2025-12-14 01:44:16] 2025-12-14 00:43:47,726 | INFO     | all payload control threads have been joined
[2025-12-14 01:44:16] 2025-12-14 00:43:47,829 | INFO     | [job] retrieve thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:47,830 | INFO     | [job] job monitor thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:47,830 | INFO     | [job] queue monitor thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:47,858 | INFO     | [job] validate thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:47,926 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:47,959 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:48,304 | INFO     | [payload] failed_post thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:48,607 | INFO     | [data] copytool_in thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:48,654 | INFO     | [data] control thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:48,731 | INFO     | [job] control thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:48,732 | INFO     | [payload] control thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:48,820 | INFO     | [payload] validate_post thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:49,240 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:49,512 | INFO     | [data] copytool_out thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:49,715 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 01:44:16] 2025-12-14 00:43:53,722 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:43:57,560 | INFO     | job.realtimelogging is not enabled
[2025-12-14 01:44:16] 2025-12-14 00:43:58,566 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 01:44:16] 2025-12-14 00:44:10,593 | INFO     | [monitor] cgroup control has ended
[2025-12-14 01:44:16] 2025-12-14 00:44:11,685 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299557889856)>', '<ExcThread(monitor, started 140298252445440)>']
[2025-12-14 01:44:16] 2025-12-14 00:44:11,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 01:44:16] 2025-12-14 00:44:11,954 | INFO     | [monitor] control thread has ended
[2025-12-14 01:44:16] 2025-12-14 00:44:16,711 | INFO     | all workflow threads have been joined
[2025-12-14 01:44:16] 2025-12-14 00:44:16,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 01:44:16] 2025-12-14 00:44:16,712 | INFO     | traces error code: 0
[2025-12-14 01:44:16] 2025-12-14 00:44:16,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 01:44:16] 2025-12-14 00:44:16,793 [wrapper] ==== pilot stdout END ====
[2025-12-14 01:44:16] 2025-12-14 00:44:16,797 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 01:44:16] 2025-12-14 00:44:16,801 [wrapper] pilotpid: 659004
[2025-12-14 01:44:16] 2025-12-14 00:44:16,805 [wrapper] Pilot exit status: 0
[2025-12-14 01:44:16] 2025-12-14 00:44:16,816 [wrapper] pandaids: 6929299150
[2025-12-14 01:44:16] 2025-12-14 00:44:16,839 [wrapper] cleanup supervisor_pilot  677851 659005
[2025-12-14 01:44:16] 2025-12-14 00:44:16,843 [wrapper] Test setup, not cleaning
[2025-12-14 01:44:16] 2025-12-14 00:44:16,848 [wrapper] apfmon messages muted
[2025-12-14 01:44:16] 2025-12-14 00:44:16,852 [wrapper] ==== wrapper stdout END ====
[2025-12-14 01:44:16] 2025-12-14 00:44:16,856 [wrapper] ==== wrapper stderr END ====
[2025-12-14 01:44:16]  *** Error codes and diagnostics ***
[2025-12-14 01:44:16]     "exeErrorCode": 0,
[2025-12-14 01:44:16]     "exeErrorDiag": "",
[2025-12-14 01:44:16]     "pilotErrorCode": 0,
[2025-12-14 01:44:16]     "pilotErrorDiag": "",
[2025-12-14 01:44:16]  *** Listing of results directory ***
[2025-12-14 01:44:16] total 439320
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc    579449 Dec 13 12:35 pilot3.tar.gz
[2025-12-14 01:44:16] -rwx------ 1 boinc boinc     36322 Dec 13 12:37 runpilot2-wrapper.sh
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc      5112 Dec 13 12:40 queuedata.json
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc       100 Dec 14 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 01:44:16] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 00:05 run_atlas
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc       105 Dec 14 00:05 job.xml
[2025-12-14 01:44:16] -rw-r--r-- 2 boinc boinc 226523734 Dec 14 00:05 EVNT.47898824._000004.pool.root.1
[2025-12-14 01:44:16] -rw-r--r-- 2 boinc boinc    592383 Dec 14 00:05 input.tar.gz
[2025-12-14 01:44:16] -rw-r--r-- 2 boinc boinc     15847 Dec 14 00:05 start_atlas.sh
[2025-12-14 01:44:16] drwxrwx--x 2 boinc boinc      4096 Dec 14 00:05 shared
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc         0 Dec 14 00:05 boinc_setup_complete
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc      6367 Dec 14 00:05 init_data.xml
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc         0 Dec 14 00:05 boinc_lockfile
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc      2510 Dec 14 00:05 pandaJob.out
[2025-12-14 01:44:16] -rw------- 1 boinc boinc    991728 Dec 14 00:06 agis_schedconf.cvmfs.json
[2025-12-14 01:44:16] -rw------- 1 boinc boinc   1516240 Dec 14 00:06 agis_ddmendpoints.agis.ALL.json
[2025-12-14 01:44:16] drwx------ 5 boinc boinc      4096 Dec 14 00:06 pilot3
[2025-12-14 01:44:16] -rw------- 1 boinc boinc 217141164 Dec 14 01:43 HITS.47898826._000099.pool.root.1
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc       530 Dec 14 01:43 boinc_task_state.xml
[2025-12-14 01:44:16] -rw------- 1 boinc boinc      1021 Dec 14 01:43 memory_monitor_summary.json
[2025-12-14 01:44:16] -rw------- 1 boinc boinc        95 Dec 14 01:43 pilot_heartbeat.json
[2025-12-14 01:44:16] -rw------- 1 boinc boinc    297301 Dec 14 01:43 log.47898826._000099.job.log.tgz.1
[2025-12-14 01:44:16] -rw------- 1 boinc boinc      7750 Dec 14 01:43 heartbeat.json
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc      8192 Dec 14 01:44 boinc_mmap_file
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc        27 Dec 14 01:44 wrapper_checkpoint.txt
[2025-12-14 01:44:16] -rw------- 1 boinc boinc      4628 Dec 14 01:44 pilotlog.txt
[2025-12-14 01:44:16] -rw------- 1 boinc boinc    850990 Dec 14 01:44 log.47898826._000099.job.log.1
[2025-12-14 01:44:16] -rw------- 1 boinc boinc       357 Dec 14 01:44 output.list
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc       620 Dec 14 01:44 runtime_log
[2025-12-14 01:44:16] -rw------- 1 boinc boinc   1167360 Dec 14 01:44 result.tar.gz
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc      8902 Dec 14 01:44 runtime_log.err
[2025-12-14 01:44:16] -rw------- 1 boinc boinc       660 Dec 14 01:44 omCMDmf7co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm2DPKDmQeaawm.diag
[2025-12-14 01:44:16] -rw-r--r-- 1 boinc boinc     11525 Dec 14 01:44 stderr.txt
[2025-12-14 01:44:16] HITS file was successfully produced:
[2025-12-14 01:44:16] -rw------- 1 boinc boinc 217141164 Dec 14 01:43 shared/HITS.pool.root.1
[2025-12-14 01:44:16]  *** Contents of shared directory: ***
[2025-12-14 01:44:16] total 435012
[2025-12-14 01:44:16] -rw-r--r-- 2 boinc boinc 226523734 Dec 14 00:05 ATLAS.root_0
[2025-12-14 01:44:16] -rw-r--r-- 2 boinc boinc    592383 Dec 14 00:05 input.tar.gz
[2025-12-14 01:44:16] -rw-r--r-- 2 boinc boinc     15847 Dec 14 00:05 start_atlas.sh
[2025-12-14 01:44:16] -rw------- 1 boinc boinc 217141164 Dec 14 01:43 HITS.pool.root.1
[2025-12-14 01:44:16] -rw------- 1 boinc boinc   1167360 Dec 14 01:44 result.tar.gz
01:44:38 (655206): run_atlas exited; CPU time 22252.114995
01:44:38 (655206): called boinc_finish(0)

</stderr_txt>
]]>

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