Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:17:09 (23018): wrapper (7.7.26015): starting
11:17:09 (23018): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 11:17:09] Arguments: --nthreads 12
[2025-12-13 11:17:09] Threads: 12
[2025-12-13 11:17:09] Checking for CVMFS
[2025-12-13 11:17:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 11:17:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 11:17:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 11:17:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 11:17:09] 2.11.2.0 3103 102366 103344 153967 1 1 15378068 20275201 1 130560 0 44119099 99.928 5393117 32977 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 11:17:09] CVMFS is ok
[2025-12-13 11:17:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 11:17:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 11:17:09] Further information can be found at the LHC@home message board.
[2025-12-13 11:17:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 11:17:09] Checking for apptainer binary...
[2025-12-13 11:17:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 11:17:09] Running /usr/bin/apptainer --version
[2025-12-13 11:17:09] apptainer version 1.3.2-1.el7
[2025-12-13 11:17:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 11:17:11] c-115-41.aglt2.org
[2025-12-13 11:17:11] apptainer works
[2025-12-13 11:17:11] Set ATHENA_PROC_NUMBER=12
[2025-12-13 11:17:11] Set ATHENA_CORE_NUMBER=12
[2025-12-13 11:17:11] Starting ATLAS job with PandaID=6929302186
[2025-12-13 11:17:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 12:50:42]  *** The last 200 lines of the pilot log: ***
[2025-12-13 12:50:42]  scope=mc23_13p6TeV
[2025-12-13 12:50:42]  status=None
[2025-12-13 12:50:42]  status_code=0
[2025-12-13 12:50:42]  storage_token=
[2025-12-13 12:50:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929302186/log.47898763._004226.job.log.tgz.1
[2025-12-13 12:50:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/75/log.47898763._004226.job.log.tgz.1
[2025-12-13 12:50:42]  workdir=None
[2025-12-13 12:50:42] ]
[2025-12-13 12:50:42] 2025-12-13 17:49:26,521 | INFO     | transferring file log.47898763._004226.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929302186/log.47898763._004226.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 12:50:42] 2025-12-13 17:49:26,521 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929302186/log.47898763._004226.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._004226.job
[2025-12-13 12:50:42] 2025-12-13 17:49:26,544 | INFO     | adding to output.list: log.47898763._004226.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/75/log.47898763._004226.job.log.tg
[2025-12-13 12:50:42] 2025-12-13 17:49:26,545 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 12:50:42] 2025-12-13 17:49:26,545 | INFO     | summary of transferred files:
[2025-12-13 12:50:42] 2025-12-13 17:49:26,546 | INFO     |  -- lfn=log.47898763._004226.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 12:50:42] 2025-12-13 17:49:26,546 | INFO     | stage-out finished correctly
[2025-12-13 12:50:42] 2025-12-13 17:49:27,123 | INFO     | time since job start (5520s) is within the limit (174528.0s)
[2025-12-13 12:50:42] 2025-12-13 17:49:29,128 | INFO     | time since job start (5522s) is within the limit (174528.0s)
[2025-12-13 12:50:42] 2025-12-13 17:49:29,531 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 12:50:42] 2025-12-13 17:49:29,604 | INFO     | job 6929302186 has state=finished
[2025-12-13 12:50:42] 2025-12-13 17:49:29,605 | INFO     | preparing for final server update for job 6929302186 in state='finished'
[2025-12-13 12:50:42] 2025-12-13 17:49:29,605 | INFO     | this job has now completed (state=finished)
[2025-12-13 12:50:42] 2025-12-13 17:49:29,605 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 12:50:42] 2025-12-13 17:49:29,606 | INFO     | log transfer has been attempted: DONE
[2025-12-13 12:50:42] 2025-12-13 17:49:29,606 | INFO     | job 6929302186 has finished - writing final server update
[2025-12-13 12:50:42] 2025-12-13 17:49:29,606 | INFO     | total number of processed events: 400 (read)
[2025-12-13 12:50:42] 2025-12-13 17:49:29,607 | INFO     | executing command: lscpu
[2025-12-13 12:50:42] 2025-12-13 17:49:29,629 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 12:50:42] 2025-12-13 17:49:30,699 | WARNING  | process 1075 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 12:50:42] 2025-12-13 17:49:30,699 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929302186/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 12:50:42] 2025-12-13 17:49:30,700 | INFO     | reaping zombies for max 20 seconds
[2025-12-13 12:50:42] 2025-12-13 17:49:30,710 | INFO     | checking for looping job (in state=finished)
[2025-12-13 12:50:42] 2025-12-13 17:49:30,711 | INFO     | using looping job limit: 7200 s
[2025-12-13 12:50:42] 2025-12-13 17:49:30,801 | INFO     | number of running child processes to parent process 1075: 1
[2025-12-13 12:50:42] 2025-12-13 17:49:30,802 | INFO     | maximum number of monitored processes: 6
[2025-12-13 12:50:42] 2025-12-13 17:49:31,133 | INFO     | time since job start (5524s) is within the limit (174528.0s)
[2025-12-13 12:50:42] 2025-12-13 17:49:33,139 | INFO     | time since job start (5526s) is within the limit (174528.0s)
[2025-12-13 12:50:42] 2025-12-13 17:49:33,305 | INFO     | monitor loop #411: job 0:6929302186 is in state 'finished'
[2025-12-13 12:50:42] 2025-12-13 17:49:33,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 12:50:42] 2025-12-13 17:49:34,251 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 12:50:42] 2025-12-13 17:49:34,255 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1762.3333333333333
[2025-12-13 12:50:42] 2025-12-13 17:49:34,257 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929302186/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 12:50:42] 2025-12-13 17:49:34,258 | INFO     | extracted standard info from prmon json
[2025-12-13 12:50:42] 2025-12-13 17:49:34,258 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 12:50:42] 2025-12-13 17:49:34,258 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 12:50:42] 2025-12-13 17:49:34,259 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 12:50:42] 2025-12-13 17:49:34,259 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 12:50:42] 2025-12-13 17:49:34,261 | INFO     | fitting pss+swap vs Time
[2025-12-13 12:50:42] 2025-12-13 17:49:34,261 | INFO     | sum of square deviations: 177275882.0
[2025-12-13 12:50:42] 2025-12-13 17:49:34,261 | INFO     | sum of deviations: -11883389992.000002
[2025-12-13 12:50:42] 2025-12-13 17:49:34,261 | INFO     | mean x: 1765645482.0
[2025-12-13 12:50:42] 2025-12-13 17:49:34,261 | INFO     | mean y: 2887797.698795181
[2025-12-13 12:50:42] 2025-12-13 17:49:34,262 | INFO     | intersect: 118359957092.76973
[2025-12-13 12:50:42] 2025-12-13 17:49:34,262 | INFO     | chi2: 0.08248811864909751
[2025-12-13 12:50:42] 2025-12-13 17:49:34,262 | INFO     | current memory leak: -67.03 B/s (using 83 data points, chi2=0.08)
[2025-12-13 12:50:42] 2025-12-13 17:49:34,262 | INFO     | could have reported an average CPU frequency of 2123 MHz (7 samples)
[2025-12-13 12:50:42] 2025-12-13 17:49:34,262 | INFO     | ..............................
[2025-12-13 12:50:42] 2025-12-13 17:49:34,262 | INFO     | . Timing measurements:
[2025-12-13 12:50:42] 2025-12-13 17:49:34,262 | INFO     | . get job = 0 s
[2025-12-13 12:50:42] 2025-12-13 17:49:34,263 | INFO     | . initial setup = 2 s
[2025-12-13 12:50:42] 2025-12-13 17:49:34,263 | INFO     | . payload setup = 7 s
[2025-12-13 12:50:42] 2025-12-13 17:49:34,263 | INFO     | . stage-in = 0 s
[2025-12-13 12:50:42] 2025-12-13 17:49:34,263 | INFO     | . payload execution = 5490 s
[2025-12-13 12:50:42] 2025-12-13 17:49:34,263 | INFO     | . stage-out = 0 s
[2025-12-13 12:50:42] 2025-12-13 17:49:34,263 | INFO     | . log creation = 0 s
[2025-12-13 12:50:42] 2025-12-13 17:49:34,263 | INFO     | ..............................
[2025-12-13 12:50:42] 2025-12-13 17:49:34,336 | INFO     | 
[2025-12-13 12:50:42] 2025-12-13 17:49:34,336 | INFO     | job summary report
[2025-12-13 12:50:42] 2025-12-13 17:49:34,336 | INFO     | --------------------------------------------------
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | PanDA job id: 6929302186
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | task id: 47898763
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | errors: (none)
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | pilot state: finished 
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | transexitcode: 0
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | exeerrorcode: 0
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | exeerrordiag: 
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | exitcode: 0
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | exitmsg: OK
[2025-12-13 12:50:42] 2025-12-13 17:49:34,337 | INFO     | cpuconsumptiontime: 59841 s
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | nevents: 400
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | neventsw: 0
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | pid: 1075
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | pgrp: 1075
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | corecount: 12
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | event service: False
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | sizes: {0: 2283946, 5: 2284208, 11: 2284264, 5501: 2310813, 5503: 2319811, 5506: 2319867, 5511: 2320189}
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | --------------------------------------------------
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | 
[2025-12-13 12:50:42] 2025-12-13 17:49:34,338 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 12:50:42] 2025-12-13 17:49:34,363 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,363 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,363 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,363 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,363 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,364 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,364 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,364 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,364 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,364 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,364 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,365 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,365 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,365 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,365 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,365 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,366 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,366 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 12:50:42] 2025-12-13 17:49:34,366 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,366 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 12:50:42] 2025-12-13 17:49:34,366 | INFO     | job 6929302186 has completed (purged errors)
[2025-12-13 12:50:42] 2025-12-13 17:49:34,366 | INFO     | overall cleanup function is called
[2025-12-13 12:50:42] 2025-12-13 17:49:35,375 | INFO     | --- collectZombieJob: --- 10, [1075]
[2025-12-13 12:50:42] 2025-12-13 17:49:35,375 | INFO     | zombie collector waiting for pid 1075
[2025-12-13 12:50:42] 2025-12-13 17:49:35,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 12:50:42] 2025-12-13 17:49:35,375 | INFO     | collected zombie processes
[2025-12-13 12:50:42] 2025-12-13 17:49:35,375 | INFO     | will attempt to kill all subprocesses of pid=1075
[2025-12-13 12:50:42] 2025-12-13 17:49:35,464 | INFO     | process IDs to be killed: [1075] (in reverse order)
[2025-12-13 12:50:42] 2025-12-13 17:49:35,517 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 12:50:42] 2025-12-13 17:49:35,517 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 12:50:42] 2025-12-13 17:49:35,520 | INFO     | did not find any defunct processes belonging to 1075
[2025-12-13 12:50:42] 2025-12-13 17:49:35,523 | INFO     | did not find any defunct processes belonging to 1075
[2025-12-13 12:50:42] 2025-12-13 17:49:35,524 | INFO     | ready for new job
[2025-12-13 12:50:42] 2025-12-13 17:49:35,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 12:50:42] 2025-12-13 17:49:35,525 | INFO     | ***************************************
[2025-12-13 12:50:42] 2025-12-13 17:49:35,525 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 12:50:42] 2025-12-13 17:49:35,525 | INFO     | ***************************************
[2025-12-13 12:50:42] 2025-12-13 17:49:35,525 | INFO     | 
[2025-12-13 12:50:42] 2025-12-13 17:49:35,526 | INFO     | architecture information:
[2025-12-13 12:50:42] 2025-12-13 17:49:35,527 | INFO     | executing command: cat /etc/os-release
[2025-12-13 12:50:42] 2025-12-13 17:49:35,543 | INFO     | cat /etc/os-release:
[2025-12-13 12:50:42] NAME="CentOS Linux"
[2025-12-13 12:50:42] VERSION="7 (Core)"
[2025-12-13 12:50:42] ID="centos"
[2025-12-13 12:50:42] ID_LIKE="rhel fedora"
[2025-12-13 12:50:42] VERSION_ID="7"
[2025-12-13 12:50:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 12:50:42] ANSI_COLOR="0;31"
[2025-12-13 12:50:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 12:50:42] HOME_URL="https://www.centos.org/"
[2025-12-13 12:50:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 12:50:42] 
[2025-12-13 12:50:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 12:50:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 12:50:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 12:50:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 12:50:42] 
[2025-12-13 12:50:42] 2025-12-13 17:49:35,543 | INFO     | ***************************************
[2025-12-13 12:50:42] 2025-12-13 17:49:36,044 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 12:50:42] 2025-12-13 17:49:36,060 | INFO     | sufficient remaining disk space (18535677952 B)
[2025-12-13 12:50:42] 2025-12-13 17:49:36,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 12:50:42] 2025-12-13 17:49:36,061 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 12:50:42] 2025-12-13 17:49:36,061 | INFO     | update_server=False
[2025-12-13 12:50:42] 2025-12-13 17:49:36,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 12:50:42] 2025-12-13 17:49:36,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:50:42] 2025-12-13 17:49:36,062 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 12:50:42] 2025-12-13 17:49:36,212 | INFO     | all data control threads have been joined
[2025-12-13 12:50:42] 2025-12-13 17:49:36,818 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:50:42] 2025-12-13 17:49:36,819 | INFO     | aborting loop
[2025-12-13 12:50:42] 2025-12-13 17:49:36,953 | INFO     | all payload control threads have been joined
[2025-12-13 12:50:42] 2025-12-13 17:49:37,067 | INFO     | [job] retrieve thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:37,067 | INFO     | [job] queue monitor thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:37,131 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 12:50:42] 2025-12-13 17:49:37,218 | INFO     | [data] control thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:37,252 | INFO     | [payload] validate_post thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:37,628 | INFO     | [data] copytool_in thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:37,691 | INFO     | all job control threads have been joined
[2025-12-13 12:50:42] 2025-12-13 17:49:37,824 | INFO     | [job] job monitor thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:37,837 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:37,953 | INFO     | [payload] control thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:38,290 | INFO     | [payload] failed_post thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:38,292 | INFO     | [job] validate thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:38,416 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:38,425 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:38,697 | INFO     | [job] control thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:39,137 | INFO     | [data] copytool_out thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:40,068 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:49:46,471 | INFO     | job.realtimelogging is not enabled
[2025-12-13 12:50:42] 2025-12-13 17:49:47,476 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 12:50:42] 2025-12-13 17:50:06,336 | INFO     | PID=27158 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 12:50:42] 2025-12-13 17:50:06,336 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 12:50:42] 2025-12-13 17:50:06,336 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 12:50:42] 2025-12-13 17:50:06,336 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 12:50:42] 2025-12-13 17:50:35,642 | INFO     | [monitor] cgroup control has ended
[2025-12-13 12:50:42] 2025-12-13 17:50:36,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140363731142464)>', '<ExcThread(monitor, started 140363004106496)>']
[2025-12-13 12:50:42] 2025-12-13 17:50:37,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 12:50:42] 2025-12-13 17:50:37,475 | INFO     | [monitor] control thread has ended
[2025-12-13 12:50:42] 2025-12-13 17:50:41,892 | INFO     | all workflow threads have been joined
[2025-12-13 12:50:42] 2025-12-13 17:50:41,892 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 12:50:42] 2025-12-13 17:50:41,893 | INFO     | traces error code: 0
[2025-12-13 12:50:42] 2025-12-13 17:50:41,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 12:50:42] 2025-12-13 17:50:41,983 [wrapper] ==== pilot stdout END ====
[2025-12-13 12:50:42] 2025-12-13 17:50:41,986 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 12:50:42] 2025-12-13 17:50:41,990 [wrapper] pilotpid: 27158
[2025-12-13 12:50:42] 2025-12-13 17:50:41,994 [wrapper] Pilot exit status: 0
[2025-12-13 12:50:42] 2025-12-13 17:50:42,009 [wrapper] pandaids: 6929302186
[2025-12-13 12:50:42] 2025-12-13 17:50:42,058 [wrapper] cleanup supervisor_pilot 15811 27159
[2025-12-13 12:50:42] 2025-12-13 17:50:42,062 [wrapper] Test setup, not cleaning
[2025-12-13 12:50:42] 2025-12-13 17:50:42,065 [wrapper] apfmon messages muted
[2025-12-13 12:50:42] 2025-12-13 17:50:42,069 [wrapper] ==== wrapper stdout END ====
[2025-12-13 12:50:42] 2025-12-13 17:50:42,073 [wrapper] ==== wrapper stderr END ====
[2025-12-13 12:50:42]  *** Error codes and diagnostics ***
[2025-12-13 12:50:42]     "exeErrorCode": 0,
[2025-12-13 12:50:42]     "exeErrorDiag": "",
[2025-12-13 12:50:42]     "pilotErrorCode": 0,
[2025-12-13 12:50:42]     "pilotErrorDiag": "",
[2025-12-13 12:50:42]  *** Listing of results directory ***
[2025-12-13 12:50:42] total 442196
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 06:35 pilot3.tar.gz
[2025-12-13 12:50:42] -rwx------ 1 boincer umatlas     36322 Dec 13 06:37 runpilot2-wrapper.sh
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 06:38 queuedata.json
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas       100 Dec 13 11:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 12:50:42] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 11:17 run_atlas
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas       105 Dec 13 11:17 job.xml
[2025-12-13 12:50:42] -rw-r--r-- 2 boincer umatlas 223790953 Dec 13 11:17 EVNT.47898761._000245.pool.root.1
[2025-12-13 12:50:42] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 11:17 start_atlas.sh
[2025-12-13 12:50:42] drwxrwx--x 2 boincer umatlas      4096 Dec 13 11:17 shared
[2025-12-13 12:50:42] -rw-r--r-- 2 boincer umatlas    592397 Dec 13 11:17 input.tar.gz
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas         0 Dec 13 11:17 boinc_lockfile
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas      2501 Dec 13 11:17 pandaJob.out
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas        57 Dec 13 11:17 setup.sh.local
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas    991728 Dec 13 11:17 agis_schedconf.cvmfs.json
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas   1516240 Dec 13 11:17 agis_ddmendpoints.agis.ALL.json
[2025-12-13 12:50:42] drwx------ 5 boincer umatlas      4096 Dec 13 11:17 pilot3
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas 222758928 Dec 13 12:48 HITS.47898763._004226.pool.root.1
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas       529 Dec 13 12:49 boinc_task_state.xml
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas      1047 Dec 13 12:49 memory_monitor_summary.json
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas    383487 Dec 13 12:49 log.47898763._004226.job.log.tgz.1
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas      5954 Dec 13 12:49 init_data.xml
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas      7849 Dec 13 12:49 heartbeat.json
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas        95 Dec 13 12:50 pilot_heartbeat.json
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 12:50 boinc_mmap_file
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas        27 Dec 13 12:50 wrapper_checkpoint.txt
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas      4818 Dec 13 12:50 pilotlog.txt
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas    790308 Dec 13 12:50 log.47898763._004226.job.log.1
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas       357 Dec 13 12:50 output.list
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas       620 Dec 13 12:50 runtime_log
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas   1187840 Dec 13 12:50 result.tar.gz
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 12:50 runtime_log.err
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas       659 Dec 13 12:50 kPiLDm46co8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXHTKDmtj2Szn.diag
[2025-12-13 12:50:42] -rw-r--r-- 1 boincer umatlas     21881 Dec 13 12:50 stderr.txt
[2025-12-13 12:50:42] HITS file was successfully produced:
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas 222758928 Dec 13 12:48 shared/HITS.pool.root.1
[2025-12-13 12:50:42]  *** Contents of shared directory: ***
[2025-12-13 12:50:42] total 437848
[2025-12-13 12:50:42] -rw-r--r-- 2 boincer umatlas 223790953 Dec 13 11:17 ATLAS.root_0
[2025-12-13 12:50:42] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 11:17 start_atlas.sh
[2025-12-13 12:50:42] -rw-r--r-- 2 boincer umatlas    592397 Dec 13 11:17 input.tar.gz
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas 222758928 Dec 13 12:48 HITS.pool.root.1
[2025-12-13 12:50:42] -rw------- 1 boincer umatlas   1187840 Dec 13 12:50 result.tar.gz
12:50:43 (23018): run_atlas exited; CPU time 59797.234730
12:50:43 (23018): called boinc_finish(0)

</stderr_txt>
]]>

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