Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:25:01 (2826312): wrapper (7.7.26015): starting
17:25:01 (2826312): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 17:25:01] Arguments: --nthreads 4
[2025-12-13 17:25:01] Threads: 4
[2025-12-13 17:25:01] Checking for CVMFS
[2025-12-13 17:25:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 17:25:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 17:25:01] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 17:25:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 17:25:01] 2.9.2.0 2601008 61 60104 153967 3 186 18971668 36864000 0 130560 0 596694 99.997 2871 173 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 17:25:01] CVMFS is ok
[2025-12-13 17:25:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 17:25:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 17:25:01] Further information can be found at the LHC@home message board.
[2025-12-13 17:25:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 17:25:01] Checking for apptainer binary...
[2025-12-13 17:25:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 17:25:01] Running /usr/bin/apptainer --version
[2025-12-13 17:25:01] apptainer version 1.4.1-1.1
[2025-12-13 17:25:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 17:25:01] thA325
[2025-12-13 17:25:01] apptainer works
[2025-12-13 17:25:01] Set ATHENA_PROC_NUMBER=4
[2025-12-13 17:25:01] Set ATHENA_CORE_NUMBER=4
[2025-12-13 17:25:01] Starting ATLAS job with PandaID=6929302127
[2025-12-13 17:25:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:29:16]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:29:16] 2025-12-13 16:28:22,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:29:16] 2025-12-13 16:28:22,468 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:22,472 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:22,472 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:22,559 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:22,647 | INFO     | all payload control threads have been joined
[2025-12-13 17:29:16] 2025-12-13 16:28:22,825 | INFO     | all job control threads have been joined
[2025-12-13 17:29:16] 2025-12-13 16:28:22,910 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:29:16] 2025-12-13 16:28:23,049 | INFO     | [data] control thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,060 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,150 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,387 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,652 | INFO     | [payload] control thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,726 | INFO     | [job] validate thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,802 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,831 | INFO     | [job] control thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,861 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:23,910 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:24,135 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:28:26,917 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:29:16] 2025-12-13 16:29:09,953 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:29:16] 2025-12-13 16:29:10,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140380657461056)>', '<ExcThread(monitor, started 140379781322496)>']
[2025-12-13 17:29:16] 2025-12-13 16:29:11,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:29:16] 2025-12-13 16:29:11,722 | INFO     | [monitor] control thread has ended
[2025-12-13 17:29:16] 2025-12-13 16:29:15,963 | INFO     | all workflow threads have been joined
[2025-12-13 17:29:16] 2025-12-13 16:29:15,963 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:29:16] 2025-12-13 16:29:15,963 | INFO     | traces error code: 0
[2025-12-13 17:29:16] 2025-12-13 16:29:15,963 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:29:16] 2025-12-13 16:29:16,028 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:29:16] 2025-12-13 16:29:16,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:29:16] 2025-12-13 16:29:16,035 [wrapper] pilotpid: 2830104
[2025-12-13 17:29:16] 2025-12-13 16:29:16,039 [wrapper] Pilot exit status: 0
[2025-12-13 17:29:16] 2025-12-13 16:29:16,049 [wrapper] pandaids: 6929302127
[2025-12-13 17:29:16] 2025-12-13 16:29:16,070 [wrapper] cleanup supervisor_pilot 2830110 2830105
[2025-12-13 17:29:16] 2025-12-13 16:29:16,074 [wrapper] Test setup, not cleaning
[2025-12-13 17:29:16] 2025-12-13 16:29:16,077 [wrapper] apfmon messages muted
[2025-12-13 17:29:16] 2025-12-13 16:29:16,080 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:29:16] 2025-12-13 16:29:16,084 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:29:16]  *** Error codes and diagnostics ***
[2025-12-13 17:29:16]     "exeErrorCode": 65,
[2025-12-13 17:29:16]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-13 17:29:16]     "pilotErrorCode": 1305,
[2025-12-13 17:29:16]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-13 17:29:16]  *** Listing of results directory ***
[2025-12-13 17:29:16] total 221620
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc    579449 Dec 13 12:35 pilot3.tar.gz
[2025-12-13 17:29:16] -rwx------ 1 boinc boinc     36322 Dec 13 12:37 runpilot2-wrapper.sh
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc      5112 Dec 13 12:38 queuedata.json
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc       100 Dec 13 17:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:29:16] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 17:25 run_atlas
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc       105 Dec 13 17:25 job.xml
[2025-12-13 17:29:16] -rw-r--r-- 2 boinc boinc 222795708 Dec 13 17:25 EVNT.47898761._000242.pool.root.1
[2025-12-13 17:29:16] -rw-r--r-- 2 boinc boinc    592399 Dec 13 17:25 input.tar.gz
[2025-12-13 17:29:16] -rw-r--r-- 2 boinc boinc     15847 Dec 13 17:25 start_atlas.sh
[2025-12-13 17:29:16] drwxrwx--x 2 boinc boinc      4096 Dec 13 17:25 shared
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc         0 Dec 13 17:25 boinc_setup_complete
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc      6368 Dec 13 17:25 init_data.xml
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc         0 Dec 13 17:25 boinc_lockfile
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc      2505 Dec 13 17:25 pandaJob.out
[2025-12-13 17:29:16] -rw------- 1 boinc boinc    991728 Dec 13 17:25 agis_schedconf.cvmfs.json
[2025-12-13 17:29:16] -rw------- 1 boinc boinc   1516240 Dec 13 17:25 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:29:16] drwx------ 5 boinc boinc      4096 Dec 13 17:25 pilot3
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc       523 Dec 13 17:26 boinc_task_state.xml
[2025-12-13 17:29:16] -rw------- 1 boinc boinc       975 Dec 13 17:26 memory_monitor_summary.json
[2025-12-13 17:29:16] -rw------- 1 boinc boinc     34071 Dec 13 17:26 log.47898763._004167.job.log.tgz.1
[2025-12-13 17:29:16] -rw------- 1 boinc boinc        95 Dec 13 17:28 pilot_heartbeat.json
[2025-12-13 17:29:16] -rw------- 1 boinc boinc      8422 Dec 13 17:28 heartbeat.json
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc        22 Dec 13 17:28 wrapper_checkpoint.txt
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc      8192 Dec 13 17:28 boinc_mmap_file
[2025-12-13 17:29:16] -rw------- 1 boinc boinc      4556 Dec 13 17:29 pilotlog.txt
[2025-12-13 17:29:16] -rw------- 1 boinc boinc     85750 Dec 13 17:29 log.47898763._004167.job.log.1
[2025-12-13 17:29:16] -rw------- 1 boinc boinc       188 Dec 13 17:29 output.list
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc       620 Dec 13 17:29 runtime_log
[2025-12-13 17:29:16] -rw------- 1 boinc boinc    143360 Dec 13 17:29 result.tar.gz
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc      8744 Dec 13 17:29 runtime_log.err
[2025-12-13 17:29:16] -rw------- 1 boinc boinc       648 Dec 13 17:29 AB8LDm26co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZ9OKDmI10Snn.diag
[2025-12-13 17:29:16] -rw-r--r-- 1 boinc boinc      6427 Dec 13 17:29 stderr.txt
[2025-12-13 17:29:16] No HITS result produced
[2025-12-13 17:29:16]  *** Contents of shared directory: ***
[2025-12-13 17:29:16] total 218316
[2025-12-13 17:29:16] -rw-r--r-- 2 boinc boinc 222795708 Dec 13 17:25 ATLAS.root_0
[2025-12-13 17:29:16] -rw-r--r-- 2 boinc boinc    592399 Dec 13 17:25 input.tar.gz
[2025-12-13 17:29:16] -rw-r--r-- 2 boinc boinc     15847 Dec 13 17:25 start_atlas.sh
[2025-12-13 17:29:16] -rw------- 1 boinc boinc    143360 Dec 13 17:29 result.tar.gz
17:29:18 (2826312): run_atlas exited; CPU time 28.129923
17:29:18 (2826312): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN