Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:59:30 (2744482): wrapper (7.7.26015): starting
16:59:30 (2744482): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 16:59:30] Arguments: --nthreads 4
[2025-12-13 16:59:30] Threads: 4
[2025-12-13 16:59:30] Checking for CVMFS
[2025-12-13 16:59:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 16:59:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 16:59:31] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 16:59:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 16:59:31] 2.9.2.0 2601008 36 55372 153965 0 186 18960450 36864000 0 130560 0 379713 100.000 5 1 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 16:59:31] CVMFS is ok
[2025-12-13 16:59:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 16:59:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 16:59:31] Further information can be found at the LHC@home message board.
[2025-12-13 16:59:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 16:59:31] Checking for apptainer binary...
[2025-12-13 16:59:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 16:59:31] Running /usr/bin/apptainer --version
[2025-12-13 16:59:31] apptainer version 1.4.1-1.1
[2025-12-13 16:59:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 16:59:31] thA325
[2025-12-13 16:59:31] apptainer works
[2025-12-13 16:59:31] Set ATHENA_PROC_NUMBER=4
[2025-12-13 16:59:31] Set ATHENA_CORE_NUMBER=4
[2025-12-13 16:59:31] Starting ATLAS job with PandaID=6929300835
[2025-12-13 16:59:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:03:45]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:03:45] 2025-12-13 16:02:56,501 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:03:45] 2025-12-13 16:02:56,776 | INFO     | [job] control thread has finished
[2025-12-13 17:03:45] 2025-12-13 16:02:56,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:03:45] 2025-12-13 16:03:00,918 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:03:45] 2025-12-13 16:03:24,362 | INFO     | PID=2748271 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 17:03:45] 2025-12-13 16:03:24,362 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:03:45] 2025-12-13 16:03:24,362 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:03:45] 2025-12-13 16:03:24,362 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:03:45] 2025-12-13 16:03:39,581 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:03:45] 2025-12-13 16:03:40,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140308854269760)>', '<ExcThread(monitor, started 140307790296832)>']
[2025-12-13 17:03:45] 2025-12-13 16:03:41,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:03:45] 2025-12-13 16:03:41,451 | INFO     | [monitor] control thread has ended
[2025-12-13 17:03:45] 2025-12-13 16:03:45,745 | INFO     | all workflow threads have been joined
[2025-12-13 17:03:45] 2025-12-13 16:03:45,745 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:03:45] 2025-12-13 16:03:45,745 | INFO     | traces error code: 0
[2025-12-13 17:03:45] 2025-12-13 16:03:45,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:03:45] 2025-12-13 16:03:45,808 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:03:45] 2025-12-13 16:03:45,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:03:45] 2025-12-13 16:03:45,816 [wrapper] pilotpid: 2748271
[2025-12-13 17:03:45] 2025-12-13 16:03:45,820 [wrapper] Pilot exit status: 0
[2025-12-13 17:03:45] 2025-12-13 16:03:45,830 [wrapper] pandaids: 6929300835
[2025-12-13 17:03:45] 2025-12-13 16:03:45,850 [wrapper] cleanup supervisor_pilot 2748277 2748272
[2025-12-13 17:03:45] 2025-12-13 16:03:45,854 [wrapper] Test setup, not cleaning
[2025-12-13 17:03:45] 2025-12-13 16:03:45,857 [wrapper] apfmon messages muted
[2025-12-13 17:03:45] 2025-12-13 16:03:45,860 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:03:45] 2025-12-13 16:03:45,864 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:03:45]  *** Error codes and diagnostics ***
[2025-12-13 17:03:45]     "exeErrorCode": 65,
[2025-12-13 17:03:45]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-13 17:03:45]     "pilotErrorCode": 1305,
[2025-12-13 17:03:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-13 17:03:45]  *** Listing of results directory ***
[2025-12-13 17:03:45] total 223764
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc    579449 Dec 13 12:35 pilot3.tar.gz
[2025-12-13 17:03:45] -rwx------ 1 boinc boinc     36322 Dec 13 12:36 runpilot2-wrapper.sh
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc      5112 Dec 13 12:36 queuedata.json
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc       100 Dec 13 16:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:03:45] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 16:59 run_atlas
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc       105 Dec 13 16:59 job.xml
[2025-12-13 17:03:45] -rw-r--r-- 2 boinc boinc 224986593 Dec 13 16:59 EVNT.47898761._000207.pool.root.1
[2025-12-13 17:03:45] -rw-r--r-- 2 boinc boinc    592394 Dec 13 16:59 input.tar.gz
[2025-12-13 17:03:45] -rw-r--r-- 2 boinc boinc     15847 Dec 13 16:59 start_atlas.sh
[2025-12-13 17:03:45] drwxrwx--x 2 boinc boinc      4096 Dec 13 16:59 shared
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc         0 Dec 13 16:59 boinc_setup_complete
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc      6368 Dec 13 16:59 init_data.xml
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc         0 Dec 13 16:59 boinc_lockfile
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc      2504 Dec 13 16:59 pandaJob.out
[2025-12-13 17:03:45] -rw------- 1 boinc boinc    991736 Dec 13 16:59 agis_schedconf.cvmfs.json
[2025-12-13 17:03:45] -rw------- 1 boinc boinc   1516240 Dec 13 16:59 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:03:45] drwx------ 5 boinc boinc      4096 Dec 13 16:59 pilot3
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc       524 Dec 13 17:00 boinc_task_state.xml
[2025-12-13 17:03:45] -rw------- 1 boinc boinc       972 Dec 13 17:00 memory_monitor_summary.json
[2025-12-13 17:03:45] -rw------- 1 boinc boinc     34145 Dec 13 17:00 log.47898763._003284.job.log.tgz.1
[2025-12-13 17:03:45] -rw------- 1 boinc boinc        95 Dec 13 17:02 pilot_heartbeat.json
[2025-12-13 17:03:45] -rw------- 1 boinc boinc      8404 Dec 13 17:02 heartbeat.json
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc      8192 Dec 13 17:03 boinc_mmap_file
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc        23 Dec 13 17:03 wrapper_checkpoint.txt
[2025-12-13 17:03:45] -rw------- 1 boinc boinc      4938 Dec 13 17:03 pilotlog.txt
[2025-12-13 17:03:45] -rw------- 1 boinc boinc     86794 Dec 13 17:03 log.47898763._003284.job.log.1
[2025-12-13 17:03:45] -rw------- 1 boinc boinc       188 Dec 13 17:03 output.list
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc       620 Dec 13 17:03 runtime_log
[2025-12-13 17:03:45] -rw------- 1 boinc boinc    143360 Dec 13 17:03 result.tar.gz
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc      8744 Dec 13 17:03 runtime_log.err
[2025-12-13 17:03:45] -rw------- 1 boinc boinc       648 Dec 13 17:03 YxLNDmF6co8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4BTKDmmg4CZm.diag
[2025-12-13 17:03:45] -rw-r--r-- 1 boinc boinc      5352 Dec 13 17:03 stderr.txt
[2025-12-13 17:03:45] No HITS result produced
[2025-12-13 17:03:45]  *** Contents of shared directory: ***
[2025-12-13 17:03:45] total 220456
[2025-12-13 17:03:45] -rw-r--r-- 2 boinc boinc 224986593 Dec 13 16:59 ATLAS.root_0
[2025-12-13 17:03:45] -rw-r--r-- 2 boinc boinc    592394 Dec 13 16:59 input.tar.gz
[2025-12-13 17:03:45] -rw-r--r-- 2 boinc boinc     15847 Dec 13 16:59 start_atlas.sh
[2025-12-13 17:03:45] -rw------- 1 boinc boinc    143360 Dec 13 17:03 result.tar.gz
17:03:47 (2744482): run_atlas exited; CPU time 28.001306
17:03:47 (2744482): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN