Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:37:17 (10965): wrapper (7.7.26015): starting
22:37:17 (10965): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 22:37:17] Arguments: --nthreads 8
[2025-12-13 22:37:17] Threads: 8
[2025-12-13 22:37:17] Checking for CVMFS
[2025-12-13 22:37:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 22:37:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 22:37:19] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 22:37:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 22:37:20] 2.11.2.0 19274 114332 135488 153973 1 220 23627487 25165824 4042 130560 10 35866480 99.862 23816048 1999 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-13 22:37:20] CVMFS is ok
[2025-12-13 22:37:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 22:37:20] Checking for apptainer binary...
[2025-12-13 22:37:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 22:37:20] Running /usr/bin/apptainer --version
[2025-12-13 22:37:20] apptainer version 1.3.2-1.el7
[2025-12-13 22:37:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 22:37:25] cg-vwn396.simple-grid.lan
[2025-12-13 22:37:25] apptainer works
[2025-12-13 22:37:25] Set ATHENA_PROC_NUMBER=8
[2025-12-13 22:37:25] Set ATHENA_CORE_NUMBER=8
[2025-12-13 22:37:25] Starting ATLAS job with PandaID=6929300944
[2025-12-13 22:37:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 04:26:09]  *** The last 200 lines of the pilot log: ***
[2025-12-14 04:26:09] 2025-12-14 03:25:25,507 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-14 04:26:09] 2025-12-14 03:25:25,509 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6929300944/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 04:26:09] 2025-12-14 03:25:25,510 | INFO     | extracted standard info from prmon json
[2025-12-14 04:26:09] 2025-12-14 03:25:25,510 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 04:26:09] 2025-12-14 03:25:25,510 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 04:26:09] 2025-12-14 03:25:25,510 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 04:26:09] 2025-12-14 03:25:25,510 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 04:26:09] 2025-12-14 03:25:25,518 | INFO     | fitting pss+swap vs Time
[2025-12-14 04:26:09] 2025-12-14 03:25:25,519 | INFO     | sum of square deviations: 11042365180.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,523 | INFO     | sum of deviations: 99113975836.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,523 | INFO     | mean x: 1765672573.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,523 | INFO     | mean y: 2464182.7021276597
[2025-12-14 04:26:09] 2025-12-14 03:25:25,523 | INFO     | intersect: -15845846019.13544
[2025-12-14 04:26:09] 2025-12-14 03:25:25,524 | INFO     | chi2: 5.369899001787502
[2025-12-14 04:26:09] 2025-12-14 03:25:25,524 | INFO     | sum of square deviations: 10546523325.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,528 | INFO     | sum of deviations: 119009337628.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,528 | INFO     | mean x: 1765672420.5
[2025-12-14 04:26:09] 2025-12-14 03:25:25,528 | INFO     | mean y: 2470218.7283950616
[2025-12-14 04:26:09] 2025-12-14 03:25:25,528 | INFO     | intersect: -19921773890.572193
[2025-12-14 04:26:09] 2025-12-14 03:25:25,533 | INFO     | chi2: 4.627070044805664
[2025-12-14 04:26:09] 2025-12-14 03:25:25,533 | INFO     | current chi2=4.627070044805664 (change=13.833201643728668 %)
[2025-12-14 04:26:09] 2025-12-14 03:25:25,533 | INFO     | right removable region: 323
[2025-12-14 04:26:09] 2025-12-14 03:25:25,534 | INFO     | sum of square deviations: 10546523325.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,538 | INFO     | sum of deviations: -8670192757.500006
[2025-12-14 04:26:09] 2025-12-14 03:25:25,538 | INFO     | mean x: 1765672725.5
[2025-12-14 04:26:09] 2025-12-14 03:25:25,538 | INFO     | mean y: 2497292.7438271604
[2025-12-14 04:26:09] 2025-12-14 03:25:25,538 | INFO     | intersect: 1454039417.5743713
[2025-12-14 04:26:09] 2025-12-14 03:25:25,539 | INFO     | chi2: 1.2787389755117138
[2025-12-14 04:26:09] 2025-12-14 03:25:25,539 | INFO     | current chi2=1.2787389755117138 (change=76.18690826240766 %)
[2025-12-14 04:26:09] 2025-12-14 03:25:25,539 | INFO     | sum of square deviations: 10065751520.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,543 | INFO     | sum of deviations: -33228886728.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,543 | INFO     | mean x: 1765672878.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,543 | INFO     | mean y: 2505026.8463949845
[2025-12-14 04:26:09] 2025-12-14 03:25:25,543 | INFO     | intersect: 5831314127.208904
[2025-12-14 04:26:09] 2025-12-14 03:25:25,544 | INFO     | chi2: 0.9049468067703492
[2025-12-14 04:26:09] 2025-12-14 03:25:25,544 | INFO     | current chi2=0.9049468067703492 (change=29.231311151033303 %)
[2025-12-14 04:26:09] 2025-12-14 03:25:25,545 | INFO     | sum of square deviations: 9599817202.5
[2025-12-14 04:26:09] 2025-12-14 03:25:25,548 | INFO     | sum of deviations: -27462941119.499977
[2025-12-14 04:26:09] 2025-12-14 03:25:25,548 | INFO     | mean x: 1765673030.5
[2025-12-14 04:26:09] 2025-12-14 03:25:25,548 | INFO     | mean y: 2503125.8503184714
[2025-12-14 04:26:09] 2025-12-14 03:25:25,548 | INFO     | intersect: 5053700815.352427
[2025-12-14 04:26:09] 2025-12-14 03:25:25,549 | INFO     | chi2: 0.8876947056653657
[2025-12-14 04:26:09] 2025-12-14 03:25:25,549 | INFO     | current chi2=0.8876947056653657 (change=1.9064215681973948 %)
[2025-12-14 04:26:09] 2025-12-14 03:25:25,549 | INFO     | left removable region: 30
[2025-12-14 04:26:09] 2025-12-14 03:25:25,550 | INFO     | sum of square deviations: 7799669962.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,556 | INFO     | sum of deviations: 15559138849.999998
[2025-12-14 04:26:09] 2025-12-14 03:25:25,556 | INFO     | mean x: 1765673305.0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,556 | INFO     | mean y: 2502116.0819112626
[2025-12-14 04:26:09] 2025-12-14 03:25:25,557 | INFO     | intersect: -3519743857.1552567
[2025-12-14 04:26:09] 2025-12-14 03:25:25,557 | INFO     | chi2: 0.0011977604618856493
[2025-12-14 04:26:09] 2025-12-14 03:25:25,557 | INFO     | current memory leak: 1.99 B/s (using 293 data points, chi2=0.00)
[2025-12-14 04:26:09] 2025-12-14 03:25:25,558 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2025-12-14 04:26:09] 2025-12-14 03:25:25,558 | INFO     | ..............................
[2025-12-14 04:26:09] 2025-12-14 03:25:25,558 | INFO     | . Timing measurements:
[2025-12-14 04:26:09] 2025-12-14 03:25:25,559 | INFO     | . get job = 0 s
[2025-12-14 04:26:09] 2025-12-14 03:25:25,559 | INFO     | . initial setup = 6 s
[2025-12-14 04:26:09] 2025-12-14 03:25:25,559 | INFO     | . payload setup = 134 s
[2025-12-14 04:26:09] 2025-12-14 03:25:25,559 | INFO     | . stage-in = 0 s
[2025-12-14 04:26:09] 2025-12-14 03:25:25,559 | INFO     | . payload execution = 20210 s
[2025-12-14 04:26:09] 2025-12-14 03:25:25,559 | INFO     | . stage-out = 3 s
[2025-12-14 04:26:09] 2025-12-14 03:25:25,559 | INFO     | . log creation = 1 s
[2025-12-14 04:26:09] 2025-12-14 03:25:25,559 | INFO     | ..............................
[2025-12-14 04:26:09] 2025-12-14 03:25:25,685 | INFO     | 
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | job summary report
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | --------------------------------------------------
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | PanDA job id: 6929300944
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | task id: 47898763
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | errors: (none)
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | pilot state: finished 
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | transexitcode: 0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,686 | INFO     | exeerrorcode: 0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | exeerrordiag: 
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | exitcode: 0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | exitmsg: OK
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | cpuconsumptiontime: 76454 s
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | nevents: 400
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | neventsw: 0
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | pid: 21383
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | pgrp: 21383
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | corecount: 8
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | event service: False
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | sizes: {0: 2283781, 1: 2283980, 2: 2283980, 12: 2284008, 23: 2284036, 34: 2284064, 45: 2284220, 55: 2284248, 66: 2284276, 77: 2284304, 87: 2284360, 95: 2284930, 98
[2025-12-14 04:26:09] 2025-12-14 03:25:25,687 | INFO     | --------------------------------------------------
[2025-12-14 04:26:09] 2025-12-14 03:25:25,688 | INFO     | 
[2025-12-14 04:26:09] 2025-12-14 03:25:25,688 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-12-14 04:26:09] 2025-12-14 03:25:26,128 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,129 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,129 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,130 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,130 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,130 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,130 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,131 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,131 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,131 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,131 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 04:26:09] 2025-12-14 03:25:26,131 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,131 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 04:26:09] 2025-12-14 03:25:26,131 | INFO     | job 6929300944 has completed (purged errors)
[2025-12-14 04:26:09] 2025-12-14 03:25:26,132 | INFO     | overall cleanup function is called
[2025-12-14 04:26:09] 2025-12-14 03:25:27,141 | INFO     | --- collectZombieJob: --- 10, [21383]
[2025-12-14 04:26:09] 2025-12-14 03:25:27,141 | INFO     | zombie collector waiting for pid 21383
[2025-12-14 04:26:09] 2025-12-14 03:25:27,141 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 04:26:09] 2025-12-14 03:25:27,141 | INFO     | collected zombie processes
[2025-12-14 04:26:09] 2025-12-14 03:25:27,141 | INFO     | will attempt to kill all subprocesses of pid=21383
[2025-12-14 04:26:09] 2025-12-14 03:25:27,261 | INFO     | process IDs to be killed: [21383] (in reverse order)
[2025-12-14 04:26:09] 2025-12-14 03:25:27,922 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 04:26:09] 2025-12-14 03:25:27,923 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 04:26:09] 2025-12-14 03:25:27,926 | INFO     | did not find any defunct processes belonging to 21383
[2025-12-14 04:26:09] 2025-12-14 03:25:27,929 | INFO     | did not find any defunct processes belonging to 21383
[2025-12-14 04:26:09] 2025-12-14 03:25:27,929 | INFO     | ready for new job
[2025-12-14 04:26:09] 2025-12-14 03:25:27,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 04:26:09] 2025-12-14 03:25:27,932 | INFO     | ***************************************
[2025-12-14 04:26:09] 2025-12-14 03:25:27,932 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 04:26:09] 2025-12-14 03:25:27,932 | INFO     | ***************************************
[2025-12-14 04:26:09] 2025-12-14 03:25:27,933 | INFO     | 
[2025-12-14 04:26:09] 2025-12-14 03:25:27,933 | INFO     | pilot is running in a VM
[2025-12-14 04:26:09] 2025-12-14 03:25:27,933 | INFO     | architecture information:
[2025-12-14 04:26:09] 2025-12-14 03:25:27,948 | INFO     | executing command: cat /etc/os-release
[2025-12-14 04:26:09] 2025-12-14 03:25:28,230 | INFO     | cat /etc/os-release:
[2025-12-14 04:26:09] NAME="CentOS Linux"
[2025-12-14 04:26:09] VERSION="7 (Core)"
[2025-12-14 04:26:09] ID="centos"
[2025-12-14 04:26:09] ID_LIKE="rhel fedora"
[2025-12-14 04:26:09] VERSION_ID="7"
[2025-12-14 04:26:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 04:26:09] ANSI_COLOR="0;31"
[2025-12-14 04:26:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 04:26:09] HOME_URL="https://www.centos.org/"
[2025-12-14 04:26:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 04:26:09] 
[2025-12-14 04:26:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 04:26:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 04:26:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 04:26:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 04:26:09] 
[2025-12-14 04:26:09] 2025-12-14 03:25:28,230 | INFO     | ***************************************
[2025-12-14 04:26:09] 2025-12-14 03:25:28,733 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-12-14 04:26:09] 2025-12-14 03:25:28,968 | INFO     | sufficient remaining disk space (497805164544 B)
[2025-12-14 04:26:09] 2025-12-14 03:25:28,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 04:26:09] 2025-12-14 03:25:28,969 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 04:26:09] 2025-12-14 03:25:28,969 | INFO     | update_server=False
[2025-12-14 04:26:09] 2025-12-14 03:25:28,969 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 04:26:09] 2025-12-14 03:25:29,154 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 04:26:09] 2025-12-14 03:25:29,154 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 04:26:09] 2025-12-14 03:25:29,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 04:26:09] 2025-12-14 03:25:29,154 | INFO     | will abort loop
[2025-12-14 04:26:09] 2025-12-14 03:25:29,293 | INFO     | all data control threads have been joined
[2025-12-14 04:26:09] 2025-12-14 03:25:29,295 | INFO     | all job control threads have been joined
[2025-12-14 04:26:09] 2025-12-14 03:25:29,738 | INFO     | all payload control threads have been joined
[2025-12-14 04:26:09] 2025-12-14 03:25:29,975 | INFO     | [job] retrieve thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 04:26:09] 2025-12-14 03:25:30,004 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,160 | INFO     | [job] job monitor thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,299 | INFO     | [data] control thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,301 | INFO     | [job] control thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,337 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 04:26:09] 2025-12-14 03:25:30,603 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 04:26:09] 2025-12-14 03:25:30,744 | INFO     | [payload] control thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,875 | INFO     | [job] validate thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,914 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:30,927 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:31,467 | INFO     | [data] copytool_in thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:31,531 | INFO     | [payload] validate_post thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:31,560 | INFO     | [payload] failed_post thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:31,707 | INFO     | [job] queue monitor thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:32,344 | INFO     | [data] copytool_out thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:34,012 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 04:26:09] 2025-12-14 03:25:58,651 | INFO     | PID=14759 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-14 04:26:09] 2025-12-14 03:25:58,652 | INFO     | .. there are 9 such processes running
[2025-12-14 04:26:09] 2025-12-14 03:25:58,654 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 04:26:09] 2025-12-14 03:25:58,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 04:26:09] 2025-12-14 03:25:58,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 04:26:09] 2025-12-14 03:26:00,442 | INFO     | [monitor] cgroup control has ended
[2025-12-14 04:26:09] 2025-12-14 03:26:00,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064710002496)>', '<ExcThread(monitor, started 140064118011648)>']
[2025-12-14 04:26:09] 2025-12-14 03:26:01,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 04:26:09] 2025-12-14 03:26:01,672 | INFO     | [monitor] control thread has ended
[2025-12-14 04:26:09] 2025-12-14 03:26:05,898 | INFO     | all workflow threads have been joined
[2025-12-14 04:26:09] 2025-12-14 03:26:05,898 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 04:26:09] 2025-12-14 03:26:05,898 | INFO     | traces error code: 0
[2025-12-14 04:26:09] 2025-12-14 03:26:05,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 04:26:09] 2025-12-14 03:26:06,257 [wrapper] ==== pilot stdout END ====
[2025-12-14 04:26:09] 2025-12-14 03:26:06,334 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 04:26:09] 2025-12-14 03:26:06,370 [wrapper] pilotpid: 14759
[2025-12-14 04:26:09] 2025-12-14 03:26:06,403 [wrapper] Pilot exit status: 0
[2025-12-14 04:26:09] 2025-12-14 03:26:06,816 [wrapper] pandaids: 6929300944
[2025-12-14 04:26:09] 2025-12-14 03:26:07,575 [wrapper] cleanup supervisor_pilot  8142 14760
[2025-12-14 04:26:09] 2025-12-14 03:26:07,591 [wrapper] Test setup, not cleaning
[2025-12-14 04:26:09] 2025-12-14 03:26:07,594 [wrapper] apfmon messages muted
[2025-12-14 04:26:09] 2025-12-14 03:26:07,597 [wrapper] ==== wrapper stdout END ====
[2025-12-14 04:26:09] 2025-12-14 03:26:07,600 [wrapper] ==== wrapper stderr END ====
[2025-12-14 04:26:09]  *** Error codes and diagnostics ***
[2025-12-14 04:26:09]     "exeErrorCode": 0,
[2025-12-14 04:26:09]     "exeErrorDiag": "",
[2025-12-14 04:26:09]     "pilotErrorCode": 0,
[2025-12-14 04:26:09]     "pilotErrorDiag": "",
[2025-12-14 04:26:09]  *** Listing of results directory ***
[2025-12-14 04:26:09] total 436456
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc    579449 Dec 13 12:35 pilot3.tar.gz
[2025-12-14 04:26:09] -rwx------. 1 boinc boinc     36322 Dec 13 12:36 runpilot2-wrapper.sh
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc      5112 Dec 13 12:36 queuedata.json
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc       100 Dec 13 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 04:26:09] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 22:37 run_atlas
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc       105 Dec 13 22:37 job.xml
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc      6393 Dec 13 22:37 init_data.xml
[2025-12-14 04:26:09] -rw-r--r--. 2 boinc boinc 222830699 Dec 13 22:37 EVNT.47898761._000211.pool.root.1
[2025-12-14 04:26:09] -rw-r--r--. 2 boinc boinc     15847 Dec 13 22:37 start_atlas.sh
[2025-12-14 04:26:09] drwxrwx--x. 2 boinc boinc        68 Dec 13 22:37 shared
[2025-12-14 04:26:09] -rw-r--r--. 2 boinc boinc    592391 Dec 13 22:37 input.tar.gz
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc         0 Dec 13 22:37 boinc_lockfile
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc      2504 Dec 13 22:37 pandaJob.out
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc    991736 Dec 13 22:41 agis_schedconf.cvmfs.json
[2025-12-14 04:26:09] drwx------. 5 boinc boinc      4096 Dec 13 22:41 pilot3
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc 213619088 Dec 14 04:22 HITS.47898763._003393.pool.root.1
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc       531 Dec 14 04:22 boinc_task_state.xml
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc      1018 Dec 14 04:23 memory_monitor_summary.json
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc   1516240 Dec 14 04:23 agis_ddmendpoints.agis.ALL.json
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc    544187 Dec 14 04:23 log.47898763._003393.job.log.tgz.1
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc      7774 Dec 14 04:25 heartbeat.json
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc        28 Dec 14 04:25 wrapper_checkpoint.txt
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc      8192 Dec 14 04:25 boinc_mmap_file
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc        95 Dec 14 04:25 pilot_heartbeat.json
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc      5070 Dec 14 04:26 pilotlog.txt
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc   2743768 Dec 14 04:26 log.47898763._003393.job.log.1
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc       357 Dec 14 04:26 output.list
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc       620 Dec 14 04:26 runtime_log
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc   3307520 Dec 14 04:26 result.tar.gz
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc      8817 Dec 14 04:26 runtime_log.err
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc       657 Dec 14 04:26 BMGKDmQ6co8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmb4OKDmO6kL9m.diag
[2025-12-14 04:26:09] -rw-r--r--. 1 boinc boinc     20740 Dec 14 04:26 stderr.txt
[2025-12-14 04:26:09] HITS file was successfully produced:
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc 213619088 Dec 14 04:22 shared/HITS.pool.root.1
[2025-12-14 04:26:09]  *** Contents of shared directory: ***
[2025-12-14 04:26:09] total 430056
[2025-12-14 04:26:09] -rw-r--r--. 2 boinc boinc 222830699 Dec 13 22:37 ATLAS.root_0
[2025-12-14 04:26:09] -rw-r--r--. 2 boinc boinc     15847 Dec 13 22:37 start_atlas.sh
[2025-12-14 04:26:09] -rw-r--r--. 2 boinc boinc    592391 Dec 13 22:37 input.tar.gz
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc 213619088 Dec 14 04:22 HITS.pool.root.1
[2025-12-14 04:26:09] -rw-------. 1 boinc boinc   3307520 Dec 14 04:26 result.tar.gz
04:26:10 (10965): run_atlas exited; CPU time 76734.179660
04:26:10 (10965): called boinc_finish(0)

</stderr_txt>
]]>

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