Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:13:33 (3527554): wrapper (7.7.26015): starting
17:13:33 (3527554): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 17:13:33] Arguments: --nthreads 4
[2025-12-14 17:13:33] Threads: 4
[2025-12-14 17:13:33] Checking for CVMFS
[2025-12-14 17:13:33] No cvmfs_config command found, will try listing directly
[2025-12-14 17:13:33] CVMFS is ok
[2025-12-14 17:13:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 17:13:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 17:13:33] Further information can be found at the LHC@home message board.
[2025-12-14 17:13:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 17:13:33] Checking for apptainer binary...
[2025-12-14 17:13:33] which: no apptainer in ((null))
[2025-12-14 17:13:33] apptainer is not installed, using version from CVMFS
[2025-12-14 17:13:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 17:13:33] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-12-14 17:13:33] apptainer works
[2025-12-14 17:13:33] Set ATHENA_PROC_NUMBER=4
[2025-12-14 17:13:33] Set ATHENA_CORE_NUMBER=4
[2025-12-14 17:13:33] Starting ATLAS job with PandaID=6929308699
[2025-12-14 17:13:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 20:41:16]  *** The last 200 lines of the pilot log: ***
[2025-12-14 20:41:16] 2025-12-14 19:36:26,976 | INFO     | executing command: lscpu
[2025-12-14 20:41:16] 2025-12-14 19:36:27,034 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-14 20:41:16] 2025-12-14 19:36:27,678 | INFO     | monitor loop #868: job 0:6929308699 is in state 'finished'
[2025-12-14 20:41:16] 2025-12-14 19:36:27,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 20:41:16] 2025-12-14 19:36:28,006 | INFO     | time since job start (12164s) is within the limit (174528.0s)
[2025-12-14 20:41:16] 2025-12-14 19:36:30,012 | INFO     | time since job start (12166s) is within the limit (174528.0s)
[2025-12-14 20:41:16] 2025-12-14 19:36:30,013 | INFO     | 12167s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-14 20:41:16] 2025-12-14 19:36:30,182 | INFO     | monitor loop #869: job 0:6929308699 is in state 'finished'
[2025-12-14 20:41:16] 2025-12-14 19:36:30,182 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,466 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-14 20:41:16] 2025-12-14 19:36:31,476 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2709.636671875
[2025-12-14 20:41:16] 2025-12-14 19:36:31,488 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6929308699/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,489 | INFO     | extracted standard info from prmon json
[2025-12-14 20:41:16] 2025-12-14 19:36:31,489 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 20:41:16] 2025-12-14 19:36:31,489 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 20:41:16] 2025-12-14 19:36:31,489 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 20:41:16] 2025-12-14 19:36:31,489 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 20:41:16] 2025-12-14 19:36:31,493 | INFO     | fitting pss+swap vs Time
[2025-12-14 20:41:16] 2025-12-14 19:36:31,494 | INFO     | sum of square deviations: 2443580700.0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,495 | INFO     | sum of deviations: -869548716.9999888
[2025-12-14 20:41:16] 2025-12-14 19:36:31,495 | INFO     | mean x: 1765734890.0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,495 | INFO     | mean y: 2344682.432160804
[2025-12-14 20:41:16] 2025-12-14 19:36:31,495 | INFO     | intersect: 630681822.3357525
[2025-12-14 20:41:16] 2025-12-14 19:36:31,496 | INFO     | chi2: 1.4331117208150999
[2025-12-14 20:41:16] 2025-12-14 19:36:31,496 | INFO     | sum of square deviations: 2263977332.5
[2025-12-14 20:41:16] 2025-12-14 19:36:31,497 | INFO     | sum of deviations: -754571281.000004
[2025-12-14 20:41:16] 2025-12-14 19:36:31,498 | INFO     | mean x: 1765734737.5
[2025-12-14 20:41:16] 2025-12-14 19:36:31,498 | INFO     | mean y: 2344780.06185567
[2025-12-14 20:41:16] 2025-12-14 19:36:31,498 | INFO     | intersect: 590854525.1264436
[2025-12-14 20:41:16] 2025-12-14 19:36:31,498 | INFO     | chi2: 1.4332117077408435
[2025-12-14 20:41:16] 2025-12-14 19:36:31,498 | INFO     | current chi2=1.4332117077408435 (change=-0.006976910752413355 %)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,498 | INFO     | right removable region: 193
[2025-12-14 20:41:16] 2025-12-14 19:36:31,499 | INFO     | sum of square deviations: 2263977332.5
[2025-12-14 20:41:16] 2025-12-14 19:36:31,500 | INFO     | sum of deviations: -28081761689.000004
[2025-12-14 20:41:16] 2025-12-14 19:36:31,500 | INFO     | mean x: 1765735042.5
[2025-12-14 20:41:16] 2025-12-14 19:36:31,500 | INFO     | mean y: 2367521.845360825
[2025-12-14 20:41:16] 2025-12-14 19:36:31,500 | INFO     | intersect: 21904066782.520836
[2025-12-14 20:41:16] 2025-12-14 19:36:31,500 | INFO     | chi2: 0.060437786436925316
[2025-12-14 20:41:16] 2025-12-14 19:36:31,500 | INFO     | current chi2=0.060437786436925316 (change=95.78275820655836 %)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,501 | INFO     | sum of square deviations: 2093397390.0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,502 | INFO     | sum of deviations: -27028282356.000004
[2025-12-14 20:41:16] 2025-12-14 19:36:31,502 | INFO     | mean x: 1765735195.0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,502 | INFO     | mean y: 2366558.9523809524
[2025-12-14 20:41:16] 2025-12-14 19:36:31,502 | INFO     | intersect: 22800135221.68427
[2025-12-14 20:41:16] 2025-12-14 19:36:31,502 | INFO     | chi2: 0.05565366616383255
[2025-12-14 20:41:16] 2025-12-14 19:36:31,503 | INFO     | current chi2=0.05565366616383255 (change=7.915776793191487 %)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,503 | INFO     | left removable region: 20
[2025-12-14 20:41:16] 2025-12-14 19:36:31,503 | INFO     | sum of square deviations: 1605470102.0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,504 | INFO     | sum of deviations: -20961068147.999992
[2025-12-14 20:41:16] 2025-12-14 19:36:31,504 | INFO     | mean x: 1765735317.0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,504 | INFO     | mean y: 2362029.421965318
[2025-12-14 20:41:16] 2025-12-14 19:36:31,504 | INFO     | intersect: 23055857865.22755
[2025-12-14 20:41:16] 2025-12-14 19:36:31,505 | INFO     | chi2: 0.05208990946737549
[2025-12-14 20:41:16] 2025-12-14 19:36:31,505 | INFO     | current memory leak: -13.06 B/s (using 173 data points, chi2=0.05)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,505 | INFO     | could have reported an average CPU frequency of 2671 MHz (10 samples)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,505 | INFO     | ..............................
[2025-12-14 20:41:16] 2025-12-14 19:36:31,505 | INFO     | . Timing measurements:
[2025-12-14 20:41:16] 2025-12-14 19:36:31,506 | INFO     | . get job = 0 s
[2025-12-14 20:41:16] 2025-12-14 19:36:31,506 | INFO     | . initial setup = 1 s
[2025-12-14 20:41:16] 2025-12-14 19:36:31,506 | INFO     | . payload setup = 6 s
[2025-12-14 20:41:16] 2025-12-14 19:36:31,506 | INFO     | . stage-in = 0 s
[2025-12-14 20:41:16] 2025-12-14 19:36:31,506 | INFO     | . payload execution = 12130 s
[2025-12-14 20:41:16] 2025-12-14 19:36:31,506 | INFO     | . stage-out = 1 s
[2025-12-14 20:41:16] 2025-12-14 19:36:31,506 | INFO     | . log creation = 0 s
[2025-12-14 20:41:16] 2025-12-14 19:36:31,506 | INFO     | ..............................
[2025-12-14 20:41:16] 2025-12-14 19:36:31,601 | INFO     | 
[2025-12-14 20:41:16] 2025-12-14 19:36:31,601 | INFO     | job summary report
[2025-12-14 20:41:16] 2025-12-14 19:36:31,601 | INFO     | --------------------------------------------------
[2025-12-14 20:41:16] 2025-12-14 19:36:31,601 | INFO     | PanDA job id: 6929308699
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | task id: 47886933
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | errors: (none)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | pilot state: finished 
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | transexitcode: 0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | exeerrorcode: 0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | exeerrordiag: 
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | exitcode: 0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | exitmsg: OK
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | cpuconsumptiontime: 46280 s
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | nevents: 400
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | neventsw: 0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | pid: 3538676
[2025-12-14 20:41:16] 2025-12-14 19:36:31,602 | INFO     | pgrp: 3538676
[2025-12-14 20:41:16] 2025-12-14 19:36:31,603 | INFO     | corecount: 4
[2025-12-14 20:41:16] 2025-12-14 19:36:31,603 | INFO     | event service: False
[2025-12-14 20:41:16] 2025-12-14 19:36:31,603 | INFO     | sizes: {0: 2283803, 1: 2284002, 5: 2284264, 12: 2284320, 12140: 2314199, 12143: 2323219, 12144: 2323403, 12152: 2323597}
[2025-12-14 20:41:16] 2025-12-14 19:36:31,603 | INFO     | --------------------------------------------------
[2025-12-14 20:41:16] 2025-12-14 19:36:31,603 | INFO     | 
[2025-12-14 20:41:16] 2025-12-14 19:36:31,603 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-14 20:41:16] 2025-12-14 19:36:31,625 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,626 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 20:41:16] 2025-12-14 19:36:31,627 | INFO     | job 6929308699 has completed (purged errors)
[2025-12-14 20:41:16] 2025-12-14 19:36:31,628 | INFO     | overall cleanup function is called
[2025-12-14 20:41:16] 2025-12-14 19:36:32,635 | INFO     | --- collectZombieJob: --- 10, [3538676]
[2025-12-14 20:41:16] 2025-12-14 19:36:32,635 | INFO     | zombie collector waiting for pid 3538676
[2025-12-14 20:41:16] 2025-12-14 19:36:32,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 20:41:16] 2025-12-14 19:36:32,635 | INFO     | collected zombie processes
[2025-12-14 20:41:16] 2025-12-14 19:36:32,635 | INFO     | will attempt to kill all subprocesses of pid=3538676
[2025-12-14 20:41:16] 2025-12-14 19:36:33,067 | INFO     | process IDs to be killed: [3538676] (in reverse order)
[2025-12-14 20:41:16] 2025-12-14 19:36:33,193 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 20:41:16] 2025-12-14 19:36:33,193 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 20:41:16] 2025-12-14 19:36:33,209 | INFO     | did not find any defunct processes belonging to 3538676
[2025-12-14 20:41:16] 2025-12-14 19:36:33,224 | INFO     | did not find any defunct processes belonging to 3538676
[2025-12-14 20:41:16] 2025-12-14 19:36:33,224 | INFO     | ready for new job
[2025-12-14 20:41:16] 2025-12-14 19:36:33,224 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 20:41:16] 2025-12-14 19:36:33,227 | INFO     | ***************************************
[2025-12-14 20:41:16] 2025-12-14 19:36:33,227 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 20:41:16] 2025-12-14 19:36:33,227 | INFO     | ***************************************
[2025-12-14 20:41:16] 2025-12-14 19:36:33,227 | INFO     | 
[2025-12-14 20:41:16] 2025-12-14 19:36:33,231 | INFO     | architecture information:
[2025-12-14 20:41:16] 2025-12-14 19:36:33,231 | INFO     | executing command: cat /etc/os-release
[2025-12-14 20:41:16] 2025-12-14 19:36:33,251 | INFO     | cat /etc/os-release:
[2025-12-14 20:41:16] NAME="CentOS Linux"
[2025-12-14 20:41:16] VERSION="7 (Core)"
[2025-12-14 20:41:16] ID="centos"
[2025-12-14 20:41:16] ID_LIKE="rhel fedora"
[2025-12-14 20:41:16] VERSION_ID="7"
[2025-12-14 20:41:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 20:41:16] ANSI_COLOR="0;31"
[2025-12-14 20:41:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 20:41:16] HOME_URL="https://www.centos.org/"
[2025-12-14 20:41:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 20:41:16] 
[2025-12-14 20:41:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 20:41:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 20:41:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 20:41:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 20:41:16] 
[2025-12-14 20:41:16] 2025-12-14 19:36:33,251 | INFO     | ***************************************
[2025-12-14 20:41:16] 2025-12-14 19:36:33,753 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-14 20:41:16] 2025-12-14 19:36:33,773 | INFO     | sufficient remaining disk space (664179572736 B)
[2025-12-14 20:41:16] 2025-12-14 19:36:33,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 20:41:16] 2025-12-14 19:36:33,774 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 20:41:16] 2025-12-14 19:36:33,774 | INFO     | update_server=False
[2025-12-14 20:41:16] 2025-12-14 19:36:33,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 20:41:16] 2025-12-14 19:36:33,775 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 20:41:16] 2025-12-14 19:36:33,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:41:16] 2025-12-14 19:36:33,775 | INFO     | aborting loop
[2025-12-14 20:41:16] 2025-12-14 19:36:33,856 | INFO     | all data control threads have been joined
[2025-12-14 20:41:16] 2025-12-14 19:36:34,342 | INFO     | all job control threads have been joined
[2025-12-14 20:41:16] 2025-12-14 19:36:34,362 | INFO     | all payload control threads have been joined
[2025-12-14 20:41:16] 2025-12-14 19:36:34,779 | INFO     | [job] retrieve thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:34,780 | INFO     | [job] job monitor thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:34,794 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 20:41:16] 2025-12-14 19:36:34,861 | INFO     | [data] control thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,269 | INFO     | [payload] failed_post thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,271 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,326 | INFO     | [payload] validate_post thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,347 | INFO     | [job] control thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,367 | INFO     | [payload] control thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,726 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,780 | INFO     | [data] copytool_out thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,881 | INFO     | [job] validate thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:35,881 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:36,121 | INFO     | [data] copytool_in thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:36,171 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:36,611 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 20:41:16] 2025-12-14 19:36:37,616 | INFO     | [job] queue monitor thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:36:38,801 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 20:41:16] 2025-12-14 19:37:03,597 | INFO     | PID=3531691 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 20:41:16] 2025-12-14 19:37:03,597 | INFO     | .. there are 6 such processes running
[2025-12-14 20:41:16] 2025-12-14 19:37:03,598 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 20:41:16] 2025-12-14 19:37:03,598 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 20:41:16] 2025-12-14 19:37:03,598 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 20:41:16] 2025-12-14 19:37:03,762 | INFO     | [monitor] cgroup control has ended
[2025-12-14 20:41:16] 2025-12-14 19:37:05,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23245324162880)>', '<ExcThread(monitor, started 23245086492416)>']
[2025-12-14 20:41:16] 2025-12-14 19:37:05,608 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 20:41:16] 2025-12-14 19:37:05,608 | INFO     | [monitor] control thread has ended
[2025-12-14 20:41:16] 2025-12-14 19:37:10,112 | INFO     | all workflow threads have been joined
[2025-12-14 20:41:16] 2025-12-14 19:37:10,112 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 20:41:16] 2025-12-14 19:37:10,112 | INFO     | traces error code: 0
[2025-12-14 20:41:16] 2025-12-14 19:37:10,112 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 20:41:16] 2025-12-14 19:37:10,224 [wrapper] ==== pilot stdout END ====
[2025-12-14 20:41:16] 2025-12-14 19:37:10,226 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 20:41:16] 2025-12-14 19:37:10,228 [wrapper] pilotpid: 3531691
[2025-12-14 20:41:16] 2025-12-14 19:37:10,230 [wrapper] Pilot exit status: 0
[2025-12-14 20:41:16] 2025-12-14 19:37:10,240 [wrapper] pandaids: 6929308699
[2025-12-14 20:41:16] 2025-12-14 19:37:10,297 [wrapper] cleanup supervisor_pilot 3771073 3531692
[2025-12-14 20:41:16] 2025-12-14 19:37:10,299 [wrapper] Test setup, not cleaning
[2025-12-14 20:41:16] 2025-12-14 19:37:10,301 [wrapper] apfmon messages muted
[2025-12-14 20:41:16] 2025-12-14 19:37:10,303 [wrapper] ==== wrapper stdout END ====
[2025-12-14 20:41:16] 2025-12-14 19:37:10,305 [wrapper] ==== wrapper stderr END ====
[2025-12-14 20:41:16]  *** Error codes and diagnostics ***
[2025-12-14 20:41:16]     "exeErrorCode": 0,
[2025-12-14 20:41:16]     "exeErrorDiag": "",
[2025-12-14 20:41:16]     "pilotErrorCode": 0,
[2025-12-14 20:41:16]     "pilotErrorDiag": "",
[2025-12-14 20:41:16]  *** Listing of results directory ***
[2025-12-14 20:41:16] total 341040
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc      5112 Dec 13 12:35 queuedata.json
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc    579449 Dec 13 12:35 pilot3.tar.gz
[2025-12-14 20:41:16] -rwx------ 1 boinc boinc     36322 Dec 13 12:35 runpilot2-wrapper.sh
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc       100 Dec 14 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 20:41:16] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 17:13 run_atlas
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc       105 Dec 14 17:13 job.xml
[2025-12-14 20:41:16] -rw-r--r-- 2 boinc boinc 192815416 Dec 14 17:13 EVNT.47886929._000074.pool.root.1
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc      6636 Dec 14 17:13 init_data.xml
[2025-12-14 20:41:16] -rw-r--r-- 2 boinc boinc     15847 Dec 14 17:13 start_atlas.sh
[2025-12-14 20:41:16] drwxrwx--x 2 boinc boinc      4096 Dec 14 17:13 shared
[2025-12-14 20:41:16] -rw-r--r-- 2 boinc boinc    592394 Dec 14 17:13 input.tar.gz
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc         0 Dec 14 17:13 boinc_lockfile
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc      2512 Dec 14 17:13 pandaJob.out
[2025-12-14 20:41:16] -rw------- 1 boinc boinc    991032 Dec 14 17:13 agis_schedconf.cvmfs.json
[2025-12-14 20:41:16] drwx------ 5 boinc boinc      4096 Dec 14 17:13 pilot3
[2025-12-14 20:41:16] -rw------- 1 boinc boinc 148310378 Dec 14 20:35 HITS.47886933._001844.pool.root.1
[2025-12-14 20:41:16] -rw------- 1 boinc boinc      1035 Dec 14 20:36 memory_monitor_summary.json
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc       528 Dec 14 20:36 boinc_task_state.xml
[2025-12-14 20:41:16] -rw------- 1 boinc boinc   1516240 Dec 14 20:36 agis_ddmendpoints.agis.ALL.json
[2025-12-14 20:41:16] -rw------- 1 boinc boinc    377618 Dec 14 20:36 log.47886933._001844.job.log.tgz.1
[2025-12-14 20:41:16] -rw------- 1 boinc boinc      7829 Dec 14 20:36 heartbeat.json
[2025-12-14 20:41:16] -rw------- 1 boinc boinc        95 Dec 14 20:37 pilot_heartbeat.json
[2025-12-14 20:41:16] -rw------- 1 boinc boinc      4833 Dec 14 20:37 pilotlog.txt
[2025-12-14 20:41:16] -rw------- 1 boinc boinc   1712181 Dec 14 20:37 log.47886933._001844.job.log.1
[2025-12-14 20:41:16] -rw------- 1 boinc boinc       357 Dec 14 20:37 output.list
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc       620 Dec 14 20:37 runtime_log
[2025-12-14 20:41:16] -rw------- 1 boinc boinc   2109440 Dec 14 20:37 result.tar.gz
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc      9206 Dec 14 20:37 runtime_log.err
[2025-12-14 20:41:16] -rw------- 1 boinc boinc       665 Dec 14 20:37 LnyNDmp5co8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm08SKDm20MiIn.diag
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc      8192 Dec 14 20:41 boinc_mmap_file
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc        27 Dec 14 20:41 wrapper_checkpoint.txt
[2025-12-14 20:41:16] -rw-r--r-- 1 boinc boinc     21210 Dec 14 20:41 stderr.txt
[2025-12-14 20:41:16] HITS file was successfully produced:
[2025-12-14 20:41:16] -rw------- 1 boinc boinc 148310378 Dec 14 20:35 shared/HITS.pool.root.1
[2025-12-14 20:41:16]  *** Contents of shared directory: ***
[2025-12-14 20:41:16] total 335800
[2025-12-14 20:41:16] -rw-r--r-- 2 boinc boinc 192815416 Dec 14 17:13 ATLAS.root_0
[2025-12-14 20:41:16] -rw-r--r-- 2 boinc boinc     15847 Dec 14 17:13 start_atlas.sh
[2025-12-14 20:41:16] -rw-r--r-- 2 boinc boinc    592394 Dec 14 17:13 input.tar.gz
[2025-12-14 20:41:16] -rw------- 1 boinc boinc 148310378 Dec 14 20:35 HITS.pool.root.1
[2025-12-14 20:41:16] -rw------- 1 boinc boinc   2109440 Dec 14 20:37 result.tar.gz
20:41:17 (3527554): run_atlas exited; CPU time 46784.673953
20:41:17 (3527554): called boinc_finish(0)

</stderr_txt>
]]>

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