Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:04:13 (2473533): wrapper (7.7.26015): starting
01:04:13 (2473533): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 01:04:13] Arguments: --nthreads 4
[2025-12-14 01:04:13] Threads: 4
[2025-12-14 01:04:13] Checking for CVMFS
[2025-12-14 01:04:13] No cvmfs_config command found, will try listing directly
[2025-12-14 01:04:13] CVMFS is ok
[2025-12-14 01:04:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 01:04:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 01:04:13] Further information can be found at the LHC@home message board.
[2025-12-14 01:04:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 01:04:13] Checking for apptainer binary...
[2025-12-14 01:04:13] which: no apptainer in ((null))
[2025-12-14 01:04:13] apptainer is not installed, using version from CVMFS
[2025-12-14 01:04:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 01:04:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-12-14 01:04:14] apptainer works
[2025-12-14 01:04:14] Set ATHENA_PROC_NUMBER=4
[2025-12-14 01:04:14] Set ATHENA_CORE_NUMBER=4
[2025-12-14 01:04:14] Starting ATLAS job with PandaID=6929243541
[2025-12-14 01:04:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 05:51:36]  *** The last 200 lines of the pilot log: ***
[2025-12-14 05:51:36] 2025-12-14 04:12:59,204 | INFO     | chi2: 1.2530051963425421
[2025-12-14 05:51:36] 2025-12-14 04:12:59,205 | INFO     | sum of square deviations: 4233158440.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,206 | INFO     | sum of deviations: 29926186603.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,206 | INFO     | mean x: 1765677951.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,206 | INFO     | mean y: 2329884.6820083684
[2025-12-14 05:51:36] 2025-12-14 04:12:59,206 | INFO     | intersect: -12480077422.148844
[2025-12-14 05:51:36] 2025-12-14 04:12:59,207 | INFO     | chi2: 1.2534813284350454
[2025-12-14 05:51:36] 2025-12-14 04:12:59,207 | INFO     | current chi2=1.2534813284350454 (change=-0.03799921132754325 %)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,207 | INFO     | right removable region: 238
[2025-12-14 05:51:36] 2025-12-14 04:12:59,207 | INFO     | sum of square deviations: 4233158440.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,209 | INFO     | sum of deviations: 3463742687.000001
[2025-12-14 05:51:36] 2025-12-14 04:12:59,209 | INFO     | mean x: 1765678256.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,209 | INFO     | mean y: 2345846.3054393306
[2025-12-14 05:51:36] 2025-12-14 04:12:59,209 | INFO     | intersect: -1442404033.3647666
[2025-12-14 05:51:36] 2025-12-14 04:12:59,210 | INFO     | chi2: 0.030957801447099486
[2025-12-14 05:51:36] 2025-12-14 04:12:59,210 | INFO     | current chi2=0.030957801447099486 (change=97.52931579713606 %)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,210 | INFO     | sum of square deviations: 3972995422.5
[2025-12-14 05:51:36] 2025-12-14 04:12:59,212 | INFO     | sum of deviations: 8901955456.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,212 | INFO     | mean x: 1765678408.5
[2025-12-14 05:51:36] 2025-12-14 04:12:59,212 | INFO     | mean y: 2342656.0683760685
[2025-12-14 05:51:36] 2025-12-14 04:12:59,212 | INFO     | intersect: -3953863901.098371
[2025-12-14 05:51:36] 2025-12-14 04:12:59,212 | INFO     | chi2: 0.007055075165454081
[2025-12-14 05:51:36] 2025-12-14 04:12:59,212 | INFO     | current chi2=0.007055075165454081 (change=77.21067118571145 %)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,213 | INFO     | sum of square deviations: 3723716330.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,214 | INFO     | sum of deviations: 9099106358.000002
[2025-12-14 05:51:36] 2025-12-14 04:12:59,214 | INFO     | mean x: 1765678561.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,214 | INFO     | mean y: 2342550.4323144103
[2025-12-14 05:51:36] 2025-12-14 04:12:59,215 | INFO     | intersect: -4312190458.2030115
[2025-12-14 05:51:36] 2025-12-14 04:12:59,215 | INFO     | chi2: 0.0007499571521208616
[2025-12-14 05:51:36] 2025-12-14 04:12:59,215 | INFO     | current chi2=0.0007499571521208616 (change=89.36996226782804 %)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,215 | INFO     | sum of square deviations: 3485088600.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,217 | INFO     | sum of deviations: 8022567347.5
[2025-12-14 05:51:36] 2025-12-14 04:12:59,217 | INFO     | mean x: 1765678713.5
[2025-12-14 05:51:36] 2025-12-14 04:12:59,217 | INFO     | mean y: 2343237.5848214286
[2025-12-14 05:51:36] 2025-12-14 04:12:59,217 | INFO     | intersect: -4062195148.3548956
[2025-12-14 05:51:36] 2025-12-14 04:12:59,217 | INFO     | chi2: 0.0005391649787584217
[2025-12-14 05:51:36] 2025-12-14 04:12:59,217 | INFO     | current chi2=0.0005391649787584217 (change=28.10722889518747 %)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,218 | INFO     | sum of square deviations: 3256879670.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,219 | INFO     | sum of deviations: 7195426959.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,219 | INFO     | mean x: 1765678866.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,219 | INFO     | mean y: 2343789.936073059
[2025-12-14 05:51:36] 2025-12-14 04:12:59,219 | INFO     | intersect: -3898571994.696814
[2025-12-14 05:51:36] 2025-12-14 04:12:59,220 | INFO     | chi2: 0.00045834593184530754
[2025-12-14 05:51:36] 2025-12-14 04:12:59,220 | INFO     | current chi2=0.00045834593184530754 (change=14.989669228743796 %)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,220 | INFO     | left removable region: 50
[2025-12-14 05:51:36] 2025-12-14 04:12:59,220 | INFO     | sum of square deviations: 2060343747.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,221 | INFO     | sum of deviations: 4376383451.0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,221 | INFO     | mean x: 1765679445.5
[2025-12-14 05:51:36] 2025-12-14 04:12:59,222 | INFO     | mean y: 2345039.340425532
[2025-12-14 05:51:36] 2025-12-14 04:12:59,222 | INFO     | intersect: -3748140925.10532
[2025-12-14 05:51:36] 2025-12-14 04:12:59,222 | INFO     | chi2: 0.0003062642567567986
[2025-12-14 05:51:36] 2025-12-14 04:12:59,222 | INFO     | current memory leak: 2.12 B/s (using 188 data points, chi2=0.00)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | could have reported an average CPU frequency of 2666 MHz (12 samples)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | ..............................
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | . Timing measurements:
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | . get job = 0 s
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | . initial setup = 1 s
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | . payload setup = 6 s
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | . stage-in = 0 s
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | . payload execution = 14882 s
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | . stage-out = 1 s
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | . log creation = 0 s
[2025-12-14 05:51:36] 2025-12-14 04:12:59,223 | INFO     | ..............................
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | 
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | job summary report
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | --------------------------------------------------
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | PanDA job id: 6929243541
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | task id: 47898782
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | errors: (none)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | pilot state: finished 
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | transexitcode: 0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | exeerrorcode: 0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,313 | INFO     | exeerrordiag: 
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | exitcode: 0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | exitmsg: OK
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | cpuconsumptiontime: 57980 s
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | nevents: 400
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | neventsw: 0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | pid: 2494794
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | pgrp: 2494794
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | corecount: 4
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | event service: False
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | sizes: {0: 2283818, 1: 2284017, 5: 2284279, 12: 2284335, 14892: 2315330, 14893: 2315329, 14894: 2324589, 14898: 2324727}
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | --------------------------------------------------
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | 
[2025-12-14 05:51:36] 2025-12-14 04:12:59,314 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-14 05:51:36] 2025-12-14 04:12:59,334 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,334 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,334 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,334 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,334 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,334 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,334 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,336 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 05:51:36] 2025-12-14 04:12:59,336 | INFO     | job 6929243541 has completed (purged errors)
[2025-12-14 05:51:36] 2025-12-14 04:12:59,336 | INFO     | overall cleanup function is called
[2025-12-14 05:51:36] 2025-12-14 04:13:00,342 | INFO     | --- collectZombieJob: --- 10, [2494794]
[2025-12-14 05:51:36] 2025-12-14 04:13:00,342 | INFO     | zombie collector waiting for pid 2494794
[2025-12-14 05:51:36] 2025-12-14 04:13:00,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 05:51:36] 2025-12-14 04:13:00,342 | INFO     | collected zombie processes
[2025-12-14 05:51:36] 2025-12-14 04:13:00,344 | INFO     | will attempt to kill all subprocesses of pid=2494794
[2025-12-14 05:51:36] 2025-12-14 04:13:00,699 | INFO     | process IDs to be killed: [2494794] (in reverse order)
[2025-12-14 05:51:36] 2025-12-14 04:13:00,806 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 05:51:36] 2025-12-14 04:13:00,806 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 05:51:36] 2025-12-14 04:13:00,819 | INFO     | did not find any defunct processes belonging to 2494794
[2025-12-14 05:51:36] 2025-12-14 04:13:00,831 | INFO     | did not find any defunct processes belonging to 2494794
[2025-12-14 05:51:36] 2025-12-14 04:13:00,831 | INFO     | ready for new job
[2025-12-14 05:51:36] 2025-12-14 04:13:00,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 05:51:36] 2025-12-14 04:13:00,834 | INFO     | ***************************************
[2025-12-14 05:51:36] 2025-12-14 04:13:00,834 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 05:51:36] 2025-12-14 04:13:00,834 | INFO     | ***************************************
[2025-12-14 05:51:36] 2025-12-14 04:13:00,834 | INFO     | 
[2025-12-14 05:51:36] 2025-12-14 04:13:00,838 | INFO     | architecture information:
[2025-12-14 05:51:36] 2025-12-14 04:13:00,838 | INFO     | executing command: cat /etc/os-release
[2025-12-14 05:51:36] 2025-12-14 04:13:00,852 | INFO     | cat /etc/os-release:
[2025-12-14 05:51:36] NAME="CentOS Linux"
[2025-12-14 05:51:36] VERSION="7 (Core)"
[2025-12-14 05:51:36] ID="centos"
[2025-12-14 05:51:36] ID_LIKE="rhel fedora"
[2025-12-14 05:51:36] VERSION_ID="7"
[2025-12-14 05:51:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 05:51:36] ANSI_COLOR="0;31"
[2025-12-14 05:51:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 05:51:36] HOME_URL="https://www.centos.org/"
[2025-12-14 05:51:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 05:51:36] 
[2025-12-14 05:51:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 05:51:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 05:51:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 05:51:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 05:51:36] 
[2025-12-14 05:51:36] 2025-12-14 04:13:00,853 | INFO     | ***************************************
[2025-12-14 05:51:36] 2025-12-14 04:13:01,356 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-14 05:51:36] 2025-12-14 04:13:01,370 | INFO     | sufficient remaining disk space (661235171328 B)
[2025-12-14 05:51:36] 2025-12-14 04:13:01,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 05:51:36] 2025-12-14 04:13:01,371 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 05:51:36] 2025-12-14 04:13:01,371 | INFO     | update_server=False
[2025-12-14 05:51:36] 2025-12-14 04:13:01,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 05:51:36] 2025-12-14 04:13:01,371 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 05:51:36] 2025-12-14 04:13:01,665 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 05:51:36] 2025-12-14 04:13:01,665 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 05:51:36] 2025-12-14 04:13:01,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 05:51:36] 2025-12-14 04:13:01,666 | INFO     | will abort loop
[2025-12-14 05:51:36] 2025-12-14 04:13:02,081 | INFO     | all payload control threads have been joined
[2025-12-14 05:51:36] 2025-12-14 04:13:02,368 | INFO     | all data control threads have been joined
[2025-12-14 05:51:36] 2025-12-14 04:13:02,377 | INFO     | [job] retrieve thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:02,467 | INFO     | [payload] validate_post thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:02,671 | INFO     | [job] job monitor thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:02,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 05:51:36] 2025-12-14 04:13:02,681 | INFO     | all job control threads have been joined
[2025-12-14 05:51:36] 2025-12-14 04:13:03,022 | INFO     | [job] validate thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,087 | INFO     | [payload] control thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,169 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,365 | INFO     | [payload] failed_post thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,370 | INFO     | [data] control thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,380 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,392 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,527 | INFO     | [data] copytool_in thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,636 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:03,686 | INFO     | [job] control thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:04,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 05:51:36] 2025-12-14 04:13:04,681 | INFO     | [data] copytool_out thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:05,323 | INFO     | [job] queue monitor thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:05,377 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 05:51:36] 2025-12-14 04:13:31,741 | INFO     | PID=2480672 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 05:51:36] 2025-12-14 04:13:31,742 | INFO     | .. there are 3 such processes running
[2025-12-14 05:51:36] 2025-12-14 04:13:31,742 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 05:51:36] 2025-12-14 04:13:31,742 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 05:51:36] 2025-12-14 04:13:31,742 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 05:51:36] 2025-12-14 04:13:48,932 | INFO     | [monitor] cgroup control has ended
[2025-12-14 05:51:36] 2025-12-14 04:13:49,939 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22567098373952)>', '<ExcThread(monitor, started 22566859142912)>']
[2025-12-14 05:51:36] 2025-12-14 04:13:50,826 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 05:51:36] 2025-12-14 04:13:50,826 | INFO     | [monitor] control thread has ended
[2025-12-14 05:51:36] 2025-12-14 04:13:54,965 | INFO     | all workflow threads have been joined
[2025-12-14 05:51:36] 2025-12-14 04:13:54,965 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 05:51:36] 2025-12-14 04:13:54,965 | INFO     | traces error code: 0
[2025-12-14 05:51:36] 2025-12-14 04:13:54,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 05:51:36] 2025-12-14 04:13:55,158 [wrapper] ==== pilot stdout END ====
[2025-12-14 05:51:36] 2025-12-14 04:13:55,161 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 05:51:36] 2025-12-14 04:13:55,163 [wrapper] pilotpid: 2480672
[2025-12-14 05:51:36] 2025-12-14 04:13:55,166 [wrapper] Pilot exit status: 0
[2025-12-14 05:51:36] 2025-12-14 04:13:55,175 [wrapper] pandaids: 6929243541
[2025-12-14 05:51:36] 2025-12-14 04:13:55,247 [wrapper] cleanup supervisor_pilot 2720096 2480673
[2025-12-14 05:51:36] 2025-12-14 04:13:55,250 [wrapper] Test setup, not cleaning
[2025-12-14 05:51:36] 2025-12-14 04:13:55,253 [wrapper] apfmon messages muted
[2025-12-14 05:51:36] 2025-12-14 04:13:55,255 [wrapper] ==== wrapper stdout END ====
[2025-12-14 05:51:36] 2025-12-14 04:13:55,257 [wrapper] ==== wrapper stderr END ====
[2025-12-14 05:51:36]  *** Error codes and diagnostics ***
[2025-12-14 05:51:36]     "exeErrorCode": 0,
[2025-12-14 05:51:36]     "exeErrorDiag": "",
[2025-12-14 05:51:36]     "pilotErrorCode": 0,
[2025-12-14 05:51:36]     "pilotErrorDiag": "",
[2025-12-14 05:51:36]  *** Listing of results directory ***
[2025-12-14 05:51:36] total 414848
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:51 pilot3.tar.gz
[2025-12-14 05:51:36] -rwx------ 1 boinc boinc     36322 Dec 13 10:03 runpilot2-wrapper.sh
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc      5112 Dec 13 10:03 queuedata.json
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc       100 Dec 14 01:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 05:51:36] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 01:04 run_atlas
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc       105 Dec 14 01:04 job.xml
[2025-12-14 05:51:36] -rw-r--r-- 2 boinc boinc 214370912 Dec 14 01:04 EVNT.47898779._000075.pool.root.1
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc      6636 Dec 14 01:04 init_data.xml
[2025-12-14 05:51:36] -rw-r--r-- 2 boinc boinc     15847 Dec 14 01:04 start_atlas.sh
[2025-12-14 05:51:36] drwxrwx--x 2 boinc boinc      4096 Dec 14 01:04 shared
[2025-12-14 05:51:36] -rw-r--r-- 2 boinc boinc    592383 Dec 14 01:04 input.tar.gz
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc         0 Dec 14 01:04 boinc_lockfile
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc      2521 Dec 14 01:04 pandaJob.out
[2025-12-14 05:51:36] -rw------- 1 boinc boinc    991736 Dec 14 01:04 agis_schedconf.cvmfs.json
[2025-12-14 05:51:36] drwx------ 5 boinc boinc      4096 Dec 14 01:04 pilot3
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc       529 Dec 14 05:12 boinc_task_state.xml
[2025-12-14 05:51:36] -rw------- 1 boinc boinc 201450622 Dec 14 05:12 HITS.47898782._001620.pool.root.1
[2025-12-14 05:51:36] -rw------- 1 boinc boinc        95 Dec 14 05:12 pilot_heartbeat.json
[2025-12-14 05:51:36] -rw------- 1 boinc boinc      1035 Dec 14 05:12 memory_monitor_summary.json
[2025-12-14 05:51:36] -rw------- 1 boinc boinc   1516240 Dec 14 05:12 agis_ddmendpoints.agis.ALL.json
[2025-12-14 05:51:36] -rw------- 1 boinc boinc    421378 Dec 14 05:12 log.47898782._001620.job.log.tgz.1
[2025-12-14 05:51:36] -rw------- 1 boinc boinc      7824 Dec 14 05:12 heartbeat.json
[2025-12-14 05:51:36] -rw------- 1 boinc boinc      5019 Dec 14 05:13 pilotlog.txt
[2025-12-14 05:51:36] -rw------- 1 boinc boinc   2111694 Dec 14 05:13 log.47898782._001620.job.log.1
[2025-12-14 05:51:36] -rw------- 1 boinc boinc       357 Dec 14 05:13 output.list
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc       620 Dec 14 05:13 runtime_log
[2025-12-14 05:51:36] -rw------- 1 boinc boinc   2549760 Dec 14 05:13 result.tar.gz
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc      9206 Dec 14 05:13 runtime_log.err
[2025-12-14 05:51:36] -rw------- 1 boinc boinc       665 Dec 14 05:13 jeyKDmhiao8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaVSKDm3XXv4n.diag
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc        26 Dec 14 05:51 wrapper_checkpoint.txt
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc      8192 Dec 14 05:51 boinc_mmap_file
[2025-12-14 05:51:36] -rw-r--r-- 1 boinc boinc     20755 Dec 14 05:51 stderr.txt
[2025-12-14 05:51:36] HITS file was successfully produced:
[2025-12-14 05:51:36] -rw------- 1 boinc boinc 201450622 Dec 14 05:12 shared/HITS.pool.root.1
[2025-12-14 05:51:36]  *** Contents of shared directory: ***
[2025-12-14 05:51:36] total 409176
[2025-12-14 05:51:36] -rw-r--r-- 2 boinc boinc 214370912 Dec 14 01:04 ATLAS.root_0
[2025-12-14 05:51:36] -rw-r--r-- 2 boinc boinc     15847 Dec 14 01:04 start_atlas.sh
[2025-12-14 05:51:36] -rw-r--r-- 2 boinc boinc    592383 Dec 14 01:04 input.tar.gz
[2025-12-14 05:51:36] -rw------- 1 boinc boinc 201450622 Dec 14 05:12 HITS.pool.root.1
[2025-12-14 05:51:36] -rw------- 1 boinc boinc   2549760 Dec 14 05:13 result.tar.gz
05:51:37 (2473533): run_atlas exited; CPU time 58631.537048
05:51:37 (2473533): called boinc_finish(0)

</stderr_txt>
]]>

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