Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:30:37 (2220291): wrapper (7.7.26015): starting
20:30:37 (2220291): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 20:30:37] Arguments: --nthreads 4
[2025-12-13 20:30:37] Threads: 4
[2025-12-13 20:30:37] Checking for CVMFS
[2025-12-13 20:30:37] No cvmfs_config command found, will try listing directly
[2025-12-13 20:30:37] CVMFS is ok
[2025-12-13 20:30:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 20:30:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 20:30:37] Further information can be found at the LHC@home message board.
[2025-12-13 20:30:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 20:30:37] Checking for apptainer binary...
[2025-12-13 20:30:37] which: no apptainer in ((null))
[2025-12-13 20:30:37] apptainer is not installed, using version from CVMFS
[2025-12-13 20:30:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 20:30:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2025-12-13 20:30:37] apptainer works
[2025-12-13 20:30:37] Set ATHENA_PROC_NUMBER=4
[2025-12-13 20:30:37] Set ATHENA_CORE_NUMBER=4
[2025-12-13 20:30:37] Starting ATLAS job with PandaID=6929243876
[2025-12-13 20:30:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 01:04:03]  *** The last 200 lines of the pilot log: ***
[2025-12-14 01:04:03] 2025-12-13 23:51:21,099 | INFO     | time since job start (15632s) is within the limit (174528.0s)
[2025-12-14 01:04:03] 2025-12-13 23:51:23,105 | INFO     | time since job start (15634s) is within the limit (174528.0s)
[2025-12-14 01:04:03] 2025-12-13 23:51:23,211 | INFO     | monitor loop #1117: job 0:6929243876 is in state 'finished'
[2025-12-14 01:04:03] 2025-12-13 23:51:23,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,110 | INFO     | time since job start (15636s) is within the limit (174528.0s)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,714 | INFO     | monitor loop #1118: job 0:6929243876 is in state 'finished'
[2025-12-14 01:04:03] 2025-12-13 23:51:25,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,790 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-14 01:04:03] 2025-12-13 23:51:25,800 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2643.45090625
[2025-12-14 01:04:03] 2025-12-13 23:51:25,813 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6929243876/memory_monitor_summary.json (trf name=prmon)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,814 | INFO     | extracted standard info from prmon json
[2025-12-14 01:04:03] 2025-12-13 23:51:25,814 | INFO     | extracted standard memory fields from prmon json
[2025-12-14 01:04:03] 2025-12-13 23:51:25,814 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-14 01:04:03] 2025-12-13 23:51:25,815 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-14 01:04:03] 2025-12-13 23:51:25,815 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-14 01:04:03] 2025-12-13 23:51:25,820 | INFO     | fitting pss+swap vs Time
[2025-12-14 01:04:03] 2025-12-13 23:51:25,820 | INFO     | sum of square deviations: 5202255680.0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,822 | INFO     | sum of deviations: -8782679319.5
[2025-12-14 01:04:03] 2025-12-13 23:51:25,822 | INFO     | mean x: 1765662055.5
[2025-12-14 01:04:03] 2025-12-13 23:51:25,822 | INFO     | mean y: 2343862.67578125
[2025-12-14 01:04:03] 2025-12-13 23:51:25,823 | INFO     | intersect: 2983213042.1132884
[2025-12-14 01:04:03] 2025-12-13 23:51:25,823 | INFO     | chi2: 1.5229143278882407
[2025-12-14 01:04:03] 2025-12-13 23:51:25,823 | INFO     | sum of square deviations: 4903347750.0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,825 | INFO     | sum of deviations: -9319814727.999998
[2025-12-14 01:04:03] 2025-12-13 23:51:25,825 | INFO     | mean x: 1765661903.0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,825 | INFO     | mean y: 2343594.964143426
[2025-12-14 01:04:03] 2025-12-13 23:51:25,825 | INFO     | intersect: 3358344973.4606824
[2025-12-14 01:04:03] 2025-12-13 23:51:25,826 | INFO     | chi2: 1.5193185438669952
[2025-12-14 01:04:03] 2025-12-13 23:51:25,826 | INFO     | current chi2=1.5193185438669952 (change=0.2361120356804059 %)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,826 | INFO     | right removable region: 250
[2025-12-14 01:04:03] 2025-12-13 23:51:25,826 | INFO     | sum of square deviations: 4903347750.0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,828 | INFO     | sum of deviations: -42102426493.0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,828 | INFO     | mean x: 1765662208.0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,828 | INFO     | mean y: 2360685.513944223
[2025-12-14 01:04:03] 2025-12-13 23:51:25,828 | INFO     | intersect: 15163158392.302755
[2025-12-14 01:04:03] 2025-12-13 23:51:25,829 | INFO     | chi2: 0.13265325476058018
[2025-12-14 01:04:03] 2025-12-13 23:51:25,829 | INFO     | current chi2=0.13265325476058018 (change=91.28951298629356 %)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,829 | INFO     | sum of square deviations: 4616114457.5
[2025-12-14 01:04:03] 2025-12-13 23:51:25,831 | INFO     | sum of deviations: -38439553697.99999
[2025-12-14 01:04:03] 2025-12-13 23:51:25,831 | INFO     | mean x: 1765662360.5
[2025-12-14 01:04:03] 2025-12-13 23:51:25,831 | INFO     | mean y: 2358730.4227642277
[2025-12-14 01:04:03] 2025-12-13 23:51:25,831 | INFO     | intersect: 14705476199.423946
[2025-12-14 01:04:03] 2025-12-13 23:51:25,832 | INFO     | chi2: 0.12915444877037346
[2025-12-14 01:04:03] 2025-12-13 23:51:25,832 | INFO     | current chi2=0.12915444877037346 (change=2.637557590668658 %)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,832 | INFO     | left removable region: 20
[2025-12-14 01:04:03] 2025-12-13 23:51:25,832 | INFO     | sum of square deviations: 3772712597.5
[2025-12-14 01:04:03] 2025-12-13 23:51:25,834 | INFO     | sum of deviations: -27502134747.999996
[2025-12-14 01:04:03] 2025-12-13 23:51:25,834 | INFO     | mean x: 1765662482.5
[2025-12-14 01:04:03] 2025-12-13 23:51:25,834 | INFO     | mean y: 2352467.0782608697
[2025-12-14 01:04:03] 2025-12-13 23:51:25,834 | INFO     | intersect: 12873591995.204863
[2025-12-14 01:04:03] 2025-12-13 23:51:25,834 | INFO     | chi2: 0.10963380010414425
[2025-12-14 01:04:03] 2025-12-13 23:51:25,835 | INFO     | current memory leak: -7.29 B/s (using 230 data points, chi2=0.11)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,835 | INFO     | could have reported an average CPU frequency of 2593 MHz (12 samples)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,835 | INFO     | ..............................
[2025-12-14 01:04:03] 2025-12-13 23:51:25,835 | INFO     | . Timing measurements:
[2025-12-14 01:04:03] 2025-12-13 23:51:25,835 | INFO     | . get job = 0 s
[2025-12-14 01:04:03] 2025-12-13 23:51:25,836 | INFO     | . initial setup = 1 s
[2025-12-14 01:04:03] 2025-12-13 23:51:25,836 | INFO     | . payload setup = 6 s
[2025-12-14 01:04:03] 2025-12-13 23:51:25,836 | INFO     | . stage-in = 0 s
[2025-12-14 01:04:03] 2025-12-13 23:51:25,836 | INFO     | . payload execution = 15596 s
[2025-12-14 01:04:03] 2025-12-13 23:51:25,836 | INFO     | . stage-out = 1 s
[2025-12-14 01:04:03] 2025-12-13 23:51:25,836 | INFO     | . log creation = 0 s
[2025-12-14 01:04:03] 2025-12-13 23:51:25,836 | INFO     | ..............................
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | 
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | job summary report
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | --------------------------------------------------
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | PanDA job id: 6929243876
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | task id: 47898782
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | errors: (none)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | pilot state: finished 
[2025-12-14 01:04:03] 2025-12-13 23:51:25,931 | INFO     | transexitcode: 0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | exeerrorcode: 0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | exeerrordiag: 
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | exitcode: 0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | exitmsg: OK
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | cpuconsumptiontime: 60107 s
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | nevents: 400
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | neventsw: 0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | pid: 2231039
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | pgrp: 2231039
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | corecount: 4
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | event service: False
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | sizes: {0: 2283989, 5: 2284251, 11: 2284307, 15606: 2315521, 15609: 2324541, 15611: 2324597, 15620: 2324919}
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | --------------------------------------------------
[2025-12-14 01:04:03] 2025-12-13 23:51:25,932 | INFO     | 
[2025-12-14 01:04:03] 2025-12-13 23:51:25,933 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2025-12-14 01:04:03] 2025-12-13 23:51:25,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,954 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,954 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,954 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,954 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,954 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 01:04:03] 2025-12-13 23:51:25,954 | INFO     | job 6929243876 has completed (purged errors)
[2025-12-14 01:04:03] 2025-12-13 23:51:25,954 | INFO     | overall cleanup function is called
[2025-12-14 01:04:03] 2025-12-13 23:51:26,962 | INFO     | --- collectZombieJob: --- 10, [2231039]
[2025-12-14 01:04:03] 2025-12-13 23:51:26,962 | INFO     | zombie collector waiting for pid 2231039
[2025-12-14 01:04:03] 2025-12-13 23:51:26,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 01:04:03] 2025-12-13 23:51:26,962 | INFO     | collected zombie processes
[2025-12-14 01:04:03] 2025-12-13 23:51:26,962 | INFO     | will attempt to kill all subprocesses of pid=2231039
[2025-12-14 01:04:03] 2025-12-13 23:51:27,356 | INFO     | process IDs to be killed: [2231039] (in reverse order)
[2025-12-14 01:04:03] 2025-12-13 23:51:27,472 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 01:04:03] 2025-12-13 23:51:27,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 01:04:03] 2025-12-13 23:51:27,486 | INFO     | did not find any defunct processes belonging to 2231039
[2025-12-14 01:04:03] 2025-12-13 23:51:27,499 | INFO     | did not find any defunct processes belonging to 2231039
[2025-12-14 01:04:03] 2025-12-13 23:51:27,500 | INFO     | ready for new job
[2025-12-14 01:04:03] 2025-12-13 23:51:27,500 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 01:04:03] 2025-12-13 23:51:27,502 | INFO     | ***************************************
[2025-12-14 01:04:03] 2025-12-13 23:51:27,502 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 01:04:03] 2025-12-13 23:51:27,502 | INFO     | ***************************************
[2025-12-14 01:04:03] 2025-12-13 23:51:27,503 | INFO     | 
[2025-12-14 01:04:03] 2025-12-13 23:51:27,507 | INFO     | architecture information:
[2025-12-14 01:04:03] 2025-12-13 23:51:27,507 | INFO     | executing command: cat /etc/os-release
[2025-12-14 01:04:03] 2025-12-13 23:51:27,524 | INFO     | cat /etc/os-release:
[2025-12-14 01:04:03] NAME="CentOS Linux"
[2025-12-14 01:04:03] VERSION="7 (Core)"
[2025-12-14 01:04:03] ID="centos"
[2025-12-14 01:04:03] ID_LIKE="rhel fedora"
[2025-12-14 01:04:03] VERSION_ID="7"
[2025-12-14 01:04:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 01:04:03] ANSI_COLOR="0;31"
[2025-12-14 01:04:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 01:04:03] HOME_URL="https://www.centos.org/"
[2025-12-14 01:04:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 01:04:03] 
[2025-12-14 01:04:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 01:04:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 01:04:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 01:04:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 01:04:03] 
[2025-12-14 01:04:03] 2025-12-13 23:51:27,525 | INFO     | ***************************************
[2025-12-14 01:04:03] 2025-12-13 23:51:28,028 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2025-12-14 01:04:03] 2025-12-13 23:51:28,045 | INFO     | sufficient remaining disk space (673640873984 B)
[2025-12-14 01:04:03] 2025-12-13 23:51:28,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 01:04:03] 2025-12-13 23:51:28,045 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 01:04:03] 2025-12-13 23:51:28,045 | INFO     | update_server=False
[2025-12-14 01:04:03] 2025-12-13 23:51:28,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 01:04:03] 2025-12-13 23:51:28,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 01:04:03] 2025-12-13 23:51:28,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 01:04:03] 2025-12-13 23:51:28,126 | INFO     | all payload control threads have been joined
[2025-12-14 01:04:03] 2025-12-13 23:51:28,187 | INFO     | all data control threads have been joined
[2025-12-14 01:04:03] 2025-12-13 23:51:28,217 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-14 01:04:03] 2025-12-13 23:51:28,217 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-14 01:04:03] 2025-12-13 23:51:28,217 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 01:04:03] 2025-12-13 23:51:28,217 | INFO     | will abort loop
[2025-12-14 01:04:03] 2025-12-13 23:51:28,383 | INFO     | all job control threads have been joined
[2025-12-14 01:04:03] 2025-12-13 23:51:29,051 | INFO     | [job] retrieve thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,104 | INFO     | [data] copytool_in thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,131 | INFO     | [payload] control thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,193 | INFO     | [data] control thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,223 | INFO     | [job] job monitor thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,332 | INFO     | [payload] validate_post thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,388 | INFO     | [job] control thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,599 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,656 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:29,680 | INFO     | [payload] failed_post thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:30,051 | INFO     | [data] copytool_out thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:30,068 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:30,326 | INFO     | [job] validate thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:30,427 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:30,941 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 01:04:03] 2025-12-13 23:51:31,946 | INFO     | [job] queue monitor thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:32,053 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 01:04:03] 2025-12-13 23:51:58,655 | INFO     | PID=2224052 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 01:04:03] 2025-12-13 23:51:58,655 | INFO     | .. there are 5 such processes running
[2025-12-14 01:04:03] 2025-12-13 23:51:58,655 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 01:04:03] 2025-12-13 23:51:58,655 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 01:04:03] 2025-12-13 23:51:58,655 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 01:04:03] 2025-12-13 23:52:14,905 | INFO     | [monitor] cgroup control has ended
[2025-12-14 01:04:03] 2025-12-13 23:52:15,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22723078375232)>', '<ExcThread(monitor, started 22722839017216)>']
[2025-12-14 01:04:03] 2025-12-13 23:52:15,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 01:04:03] 2025-12-13 23:52:15,742 | INFO     | [monitor] control thread has ended
[2025-12-14 01:04:03] 2025-12-13 23:52:20,526 | INFO     | all workflow threads have been joined
[2025-12-14 01:04:03] 2025-12-13 23:52:20,526 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 01:04:03] 2025-12-13 23:52:20,526 | INFO     | traces error code: 0
[2025-12-14 01:04:03] 2025-12-13 23:52:20,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 01:04:03] 2025-12-13 23:52:20,666 [wrapper] ==== pilot stdout END ====
[2025-12-14 01:04:03] 2025-12-13 23:52:20,668 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 01:04:03] 2025-12-13 23:52:20,671 [wrapper] pilotpid: 2224052
[2025-12-14 01:04:03] 2025-12-13 23:52:20,673 [wrapper] Pilot exit status: 0
[2025-12-14 01:04:03] 2025-12-13 23:52:20,683 [wrapper] pandaids: 6929243876
[2025-12-14 01:04:03] 2025-12-13 23:52:20,757 [wrapper] cleanup supervisor_pilot 2456453 2224053
[2025-12-14 01:04:03] 2025-12-13 23:52:20,759 [wrapper] Test setup, not cleaning
[2025-12-14 01:04:03] 2025-12-13 23:52:20,762 [wrapper] apfmon messages muted
[2025-12-14 01:04:03] 2025-12-13 23:52:20,764 [wrapper] ==== wrapper stdout END ====
[2025-12-14 01:04:03] 2025-12-13 23:52:20,766 [wrapper] ==== wrapper stderr END ====
[2025-12-14 01:04:03]  *** Error codes and diagnostics ***
[2025-12-14 01:04:03]     "exeErrorCode": 0,
[2025-12-14 01:04:03]     "exeErrorDiag": "",
[2025-12-14 01:04:03]     "pilotErrorCode": 0,
[2025-12-14 01:04:03]     "pilotErrorDiag": "",
[2025-12-14 01:04:03]  *** Listing of results directory ***
[2025-12-14 01:04:03] total 412608
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:51 pilot3.tar.gz
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc      5112 Dec 13 10:03 queuedata.json
[2025-12-14 01:04:03] -rwx------ 1 boinc boinc     36322 Dec 13 10:03 runpilot2-wrapper.sh
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc       100 Dec 13 20:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 01:04:03] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 20:30 run_atlas
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc       105 Dec 13 20:30 job.xml
[2025-12-14 01:04:03] -rw-r--r-- 2 boinc boinc 214701235 Dec 13 20:30 EVNT.47898779._000082.pool.root.1
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc      6636 Dec 13 20:30 init_data.xml
[2025-12-14 01:04:03] -rw-r--r-- 2 boinc boinc     15847 Dec 13 20:30 start_atlas.sh
[2025-12-14 01:04:03] drwxrwx--x 2 boinc boinc      4096 Dec 13 20:30 shared
[2025-12-14 01:04:03] -rw-r--r-- 2 boinc boinc    592389 Dec 13 20:30 input.tar.gz
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc         0 Dec 13 20:30 boinc_lockfile
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc      2521 Dec 13 20:30 pandaJob.out
[2025-12-14 01:04:03] -rw------- 1 boinc boinc    991736 Dec 13 20:30 agis_schedconf.cvmfs.json
[2025-12-14 01:04:03] drwx------ 5 boinc boinc      4096 Dec 13 20:30 pilot3
[2025-12-14 01:04:03] -rw------- 1 boinc boinc 198644681 Dec 14 00:50 HITS.47898782._001796.pool.root.1
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc       529 Dec 14 00:50 boinc_task_state.xml
[2025-12-14 01:04:03] -rw------- 1 boinc boinc        95 Dec 14 00:51 pilot_heartbeat.json
[2025-12-14 01:04:03] -rw------- 1 boinc boinc      1038 Dec 14 00:51 memory_monitor_summary.json
[2025-12-14 01:04:03] -rw------- 1 boinc boinc   1516240 Dec 14 00:51 agis_ddmendpoints.agis.ALL.json
[2025-12-14 01:04:03] -rw------- 1 boinc boinc    431589 Dec 14 00:51 log.47898782._001796.job.log.tgz.1
[2025-12-14 01:04:03] -rw------- 1 boinc boinc      7824 Dec 14 00:51 heartbeat.json
[2025-12-14 01:04:03] -rw------- 1 boinc boinc      5019 Dec 14 00:52 pilotlog.txt
[2025-12-14 01:04:03] -rw------- 1 boinc boinc   2189829 Dec 14 00:52 log.47898782._001796.job.log.1
[2025-12-14 01:04:03] -rw------- 1 boinc boinc       357 Dec 14 00:52 output.list
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc       620 Dec 14 00:52 runtime_log
[2025-12-14 01:04:03] -rw------- 1 boinc boinc   2641920 Dec 14 00:52 result.tar.gz
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc      9206 Dec 14 00:52 runtime_log.err
[2025-12-14 01:04:03] -rw------- 1 boinc boinc       665 Dec 14 00:52 4C2MDmqiao8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjWSKDm93Xxjm.diag
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc        26 Dec 14 01:03 wrapper_checkpoint.txt
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc      8192 Dec 14 01:04 boinc_mmap_file
[2025-12-14 01:04:03] -rw-r--r-- 1 boinc boinc     21094 Dec 14 01:04 stderr.txt
[2025-12-14 01:04:03] HITS file was successfully produced:
[2025-12-14 01:04:03] -rw------- 1 boinc boinc 198644681 Dec 14 00:50 shared/HITS.pool.root.1
[2025-12-14 01:04:03]  *** Contents of shared directory: ***
[2025-12-14 01:04:03] total 406848
[2025-12-14 01:04:03] -rw-r--r-- 2 boinc boinc 214701235 Dec 13 20:30 ATLAS.root_0
[2025-12-14 01:04:03] -rw-r--r-- 2 boinc boinc     15847 Dec 13 20:30 start_atlas.sh
[2025-12-14 01:04:03] -rw-r--r-- 2 boinc boinc    592389 Dec 13 20:30 input.tar.gz
[2025-12-14 01:04:03] -rw------- 1 boinc boinc 198644681 Dec 14 00:50 HITS.pool.root.1
[2025-12-14 01:04:03] -rw------- 1 boinc boinc   2641920 Dec 14 00:52 result.tar.gz
01:04:05 (2220291): run_atlas exited; CPU time 60796.921153
01:04:05 (2220291): called boinc_finish(0)

</stderr_txt>
]]>

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