Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:52:12 (26449): wrapper (7.7.26015): starting
09:52:12 (26449): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 09:52:12] Arguments: --nthreads 12
[2025-12-13 09:52:12] Threads: 12
[2025-12-13 09:52:12] Checking for CVMFS
[2025-12-13 09:52:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 09:52:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 09:52:12] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 09:52:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 09:52:13] 2.11.2.0 2914 312306 95092 153963 2 57 14421479 20275200 1 130560 1 137702374 99.962 18272751 14984 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 09:52:13] CVMFS is ok
[2025-12-13 09:52:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 09:52:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 09:52:13] Further information can be found at the LHC@home message board.
[2025-12-13 09:52:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 09:52:13] Checking for apptainer binary...
[2025-12-13 09:52:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 09:52:13] Running /usr/bin/apptainer --version
[2025-12-13 09:52:13] apptainer version 1.3.2-1.el7
[2025-12-13 09:52:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 09:52:14] c-205-5.aglt2.org
[2025-12-13 09:52:14] apptainer works
[2025-12-13 09:52:14] Set ATHENA_PROC_NUMBER=12
[2025-12-13 09:52:14] Set ATHENA_CORE_NUMBER=12
[2025-12-13 09:52:14] Starting ATLAS job with PandaID=6929222259
[2025-12-13 09:52:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 11:09:46]  *** The last 200 lines of the pilot log: ***
[2025-12-13 11:09:46] 2025-12-13 16:09:04,729 | INFO     | summary of transferred files:
[2025-12-13 11:09:46] 2025-12-13 16:09:04,729 | INFO     |  -- lfn=log.47886831._004291.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 11:09:46] 2025-12-13 16:09:04,729 | INFO     | stage-out finished correctly
[2025-12-13 11:09:46] 2025-12-13 16:09:04,806 | INFO     | time since job start (4595s) is within the limit (174528.0s)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,811 | INFO     | time since job start (4597s) is within the limit (174528.0s)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,915 | WARNING  | process 4220 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 11:09:46] 2025-12-13 16:09:06,915 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929222259/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,916 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929222259/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,917 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-13 11:09:46] 2025-12-13 16:09:06,917 | WARNING  | maxPSS not found in memory monitor output
[2025-12-13 11:09:46] 2025-12-13 16:09:06,917 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4116210 B
[2025-12-13 11:09:46] 2025-12-13 16:09:06,917 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15347 B
[2025-12-13 11:09:46] 2025-12-13 16:09:06,918 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 11:09:46] 2025-12-13 16:09:06,935 | INFO     | sufficient remaining disk space (29447159808 B)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,936 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,937 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929222259: 4414295 B (within 2768240640 B limit)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,937 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929222259/HITS.47886831._004291.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,937 | INFO     | total size of present files: 0 B (workdir size: 4414295 B)
[2025-12-13 11:09:46] 2025-12-13 16:09:06,937 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929222259/HITS.47886831._004291.pool.root.1 since it does not exist
[2025-12-13 11:09:46] 2025-12-13 16:09:07,031 | INFO     | number of running child processes to parent process 4220: 1
[2025-12-13 11:09:46] 2025-12-13 16:09:07,031 | INFO     | maximum number of monitored processes: 6
[2025-12-13 11:09:46] 2025-12-13 16:09:07,436 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 11:09:46] 2025-12-13 16:09:08,714 | INFO     | job 6929222259 has state=finished
[2025-12-13 11:09:46] 2025-12-13 16:09:08,714 | INFO     | preparing for final server update for job 6929222259 in state='finished'
[2025-12-13 11:09:46] 2025-12-13 16:09:08,715 | INFO     | this job has now completed (state=finished)
[2025-12-13 11:09:46] 2025-12-13 16:09:08,715 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 11:09:46] 2025-12-13 16:09:08,715 | INFO     | log transfer has been attempted: DONE
[2025-12-13 11:09:46] 2025-12-13 16:09:08,716 | INFO     | job 6929222259 has finished - writing final server update
[2025-12-13 11:09:46] 2025-12-13 16:09:08,716 | INFO     | total number of processed events: 400 (read)
[2025-12-13 11:09:46] 2025-12-13 16:09:08,717 | INFO     | executing command: lscpu
[2025-12-13 11:09:46] 2025-12-13 16:09:08,742 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 11:09:46] 2025-12-13 16:09:08,817 | INFO     | time since job start (4599s) is within the limit (174528.0s)
[2025-12-13 11:09:46] 2025-12-13 16:09:09,534 | INFO     | monitor loop #343: job 0:6929222259 is in state 'finished'
[2025-12-13 11:09:46] 2025-12-13 16:09:09,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 11:09:46] 2025-12-13 16:09:10,822 | INFO     | time since job start (4601s) is within the limit (174528.0s)
[2025-12-13 11:09:46] 2025-12-13 16:09:12,037 | INFO     | monitor loop #344: job 0:6929222259 is in state 'finished'
[2025-12-13 11:09:46] 2025-12-13 16:09:12,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 11:09:46] 2025-12-13 16:09:12,827 | INFO     | time since job start (4603s) is within the limit (174528.0s)
[2025-12-13 11:09:46] 2025-12-13 16:09:13,498 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 11:09:46] 2025-12-13 16:09:13,502 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-13 11:09:46] 2025-12-13 16:09:13,505 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929222259/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 11:09:46] 2025-12-13 16:09:13,506 | INFO     | extracted standard info from prmon json
[2025-12-13 11:09:46] 2025-12-13 16:09:13,506 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 11:09:46] 2025-12-13 16:09:13,506 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 11:09:46] 2025-12-13 16:09:13,506 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 11:09:46] 2025-12-13 16:09:13,507 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 11:09:46] 2025-12-13 16:09:13,509 | INFO     | fitting pss+swap vs Time
[2025-12-13 11:09:46] 2025-12-13 16:09:13,509 | INFO     | sum of square deviations: 97479037.0
[2025-12-13 11:09:46] 2025-12-13 16:09:13,509 | INFO     | sum of deviations: -2335433190.0
[2025-12-13 11:09:46] 2025-12-13 16:09:13,509 | INFO     | mean x: 1765639927.5
[2025-12-13 11:09:46] 2025-12-13 16:09:13,509 | INFO     | mean y: 2677840.588235294
[2025-12-13 11:09:46] 2025-12-13 16:09:13,510 | INFO     | intersect: 42304430249.90567
[2025-12-13 11:09:46] 2025-12-13 16:09:13,510 | INFO     | chi2: 0.05507885433111762
[2025-12-13 11:09:46] 2025-12-13 16:09:13,510 | INFO     | current memory leak: -23.96 B/s (using 68 data points, chi2=0.06)
[2025-12-13 11:09:46] 2025-12-13 16:09:13,510 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-12-13 11:09:46] 2025-12-13 16:09:13,510 | INFO     | ..............................
[2025-12-13 11:09:46] 2025-12-13 16:09:13,510 | INFO     | . Timing measurements:
[2025-12-13 11:09:46] 2025-12-13 16:09:13,511 | INFO     | . get job = 0 s
[2025-12-13 11:09:46] 2025-12-13 16:09:13,511 | INFO     | . initial setup = 2 s
[2025-12-13 11:09:46] 2025-12-13 16:09:13,511 | INFO     | . payload setup = 7 s
[2025-12-13 11:09:46] 2025-12-13 16:09:13,511 | INFO     | . stage-in = 0 s
[2025-12-13 11:09:46] 2025-12-13 16:09:13,511 | INFO     | . payload execution = 4566 s
[2025-12-13 11:09:46] 2025-12-13 16:09:13,511 | INFO     | . stage-out = 0 s
[2025-12-13 11:09:46] 2025-12-13 16:09:13,511 | INFO     | . log creation = 0 s
[2025-12-13 11:09:46] 2025-12-13 16:09:13,511 | INFO     | ..............................
[2025-12-13 11:09:46] 2025-12-13 16:09:13,975 | INFO     | 
[2025-12-13 11:09:46] 2025-12-13 16:09:13,975 | INFO     | job summary report
[2025-12-13 11:09:46] 2025-12-13 16:09:13,975 | INFO     | --------------------------------------------------
[2025-12-13 11:09:46] 2025-12-13 16:09:13,975 | INFO     | PanDA job id: 6929222259
[2025-12-13 11:09:46] 2025-12-13 16:09:13,975 | INFO     | task id: 47886831
[2025-12-13 11:09:46] 2025-12-13 16:09:13,976 | INFO     | errors: (none)
[2025-12-13 11:09:46] 2025-12-13 16:09:13,976 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 11:09:46] 2025-12-13 16:09:13,976 | INFO     | pilot state: finished 
[2025-12-13 11:09:46] 2025-12-13 16:09:13,976 | INFO     | transexitcode: 0
[2025-12-13 11:09:46] 2025-12-13 16:09:13,976 | INFO     | exeerrorcode: 0
[2025-12-13 11:09:46] 2025-12-13 16:09:13,976 | INFO     | exeerrordiag: 
[2025-12-13 11:09:46] 2025-12-13 16:09:13,977 | INFO     | exitcode: 0
[2025-12-13 11:09:46] 2025-12-13 16:09:13,977 | INFO     | exitmsg: OK
[2025-12-13 11:09:46] 2025-12-13 16:09:13,977 | INFO     | cpuconsumptiontime: 49505 s
[2025-12-13 11:09:46] 2025-12-13 16:09:13,977 | INFO     | nevents: 400
[2025-12-13 11:09:46] 2025-12-13 16:09:13,977 | INFO     | neventsw: 0
[2025-12-13 11:09:46] 2025-12-13 16:09:13,977 | INFO     | pid: 4220
[2025-12-13 11:09:46] 2025-12-13 16:09:13,977 | INFO     | pgrp: 4220
[2025-12-13 11:09:46] 2025-12-13 16:09:13,977 | INFO     | corecount: 12
[2025-12-13 11:09:46] 2025-12-13 16:09:13,978 | INFO     | event service: False
[2025-12-13 11:09:46] 2025-12-13 16:09:13,978 | INFO     | sizes: {0: 2283818, 1: 2284017, 6: 2284279, 11: 2284307, 4577: 2310401, 4578: 2310400, 4579: 2319582, 4582: 2319666, 4588: 2319860}
[2025-12-13 11:09:46] 2025-12-13 16:09:13,978 | INFO     | --------------------------------------------------
[2025-12-13 11:09:46] 2025-12-13 16:09:13,978 | INFO     | 
[2025-12-13 11:09:46] 2025-12-13 16:09:13,978 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 11:09:46] 2025-12-13 16:09:14,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,001 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 11:09:46] 2025-12-13 16:09:14,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 11:09:46] 2025-12-13 16:09:14,005 | INFO     | job 6929222259 has completed (purged errors)
[2025-12-13 11:09:46] 2025-12-13 16:09:14,005 | INFO     | overall cleanup function is called
[2025-12-13 11:09:46] 2025-12-13 16:09:15,013 | INFO     | --- collectZombieJob: --- 10, [4220]
[2025-12-13 11:09:46] 2025-12-13 16:09:15,013 | INFO     | zombie collector waiting for pid 4220
[2025-12-13 11:09:46] 2025-12-13 16:09:15,019 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 11:09:46] 2025-12-13 16:09:15,019 | INFO     | collected zombie processes
[2025-12-13 11:09:46] 2025-12-13 16:09:15,019 | INFO     | will attempt to kill all subprocesses of pid=4220
[2025-12-13 11:09:46] 2025-12-13 16:09:15,113 | INFO     | process IDs to be killed: [4220] (in reverse order)
[2025-12-13 11:09:46] 2025-12-13 16:09:15,166 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 11:09:46] 2025-12-13 16:09:15,166 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 11:09:46] 2025-12-13 16:09:15,170 | INFO     | did not find any defunct processes belonging to 4220
[2025-12-13 11:09:46] 2025-12-13 16:09:15,173 | INFO     | did not find any defunct processes belonging to 4220
[2025-12-13 11:09:46] 2025-12-13 16:09:15,173 | INFO     | ready for new job
[2025-12-13 11:09:46] 2025-12-13 16:09:15,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 11:09:46] 2025-12-13 16:09:15,175 | INFO     | ***************************************
[2025-12-13 11:09:46] 2025-12-13 16:09:15,175 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 11:09:46] 2025-12-13 16:09:15,175 | INFO     | ***************************************
[2025-12-13 11:09:46] 2025-12-13 16:09:15,176 | INFO     | 
[2025-12-13 11:09:46] 2025-12-13 16:09:15,176 | INFO     | architecture information:
[2025-12-13 11:09:46] 2025-12-13 16:09:15,177 | INFO     | executing command: cat /etc/os-release
[2025-12-13 11:09:46] 2025-12-13 16:09:15,193 | INFO     | cat /etc/os-release:
[2025-12-13 11:09:46] NAME="CentOS Linux"
[2025-12-13 11:09:46] VERSION="7 (Core)"
[2025-12-13 11:09:46] ID="centos"
[2025-12-13 11:09:46] ID_LIKE="rhel fedora"
[2025-12-13 11:09:46] VERSION_ID="7"
[2025-12-13 11:09:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 11:09:46] ANSI_COLOR="0;31"
[2025-12-13 11:09:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 11:09:46] HOME_URL="https://www.centos.org/"
[2025-12-13 11:09:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 11:09:46] 
[2025-12-13 11:09:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 11:09:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 11:09:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 11:09:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 11:09:46] 
[2025-12-13 11:09:46] 2025-12-13 16:09:15,193 | INFO     | ***************************************
[2025-12-13 11:09:46] 2025-12-13 16:09:15,696 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 11:09:46] 2025-12-13 16:09:15,713 | INFO     | sufficient remaining disk space (29452402688 B)
[2025-12-13 11:09:46] 2025-12-13 16:09:15,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 11:09:46] 2025-12-13 16:09:15,713 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 11:09:46] 2025-12-13 16:09:15,713 | INFO     | update_server=False
[2025-12-13 11:09:46] 2025-12-13 16:09:15,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 11:09:46] 2025-12-13 16:09:15,714 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 11:09:46] 2025-12-13 16:09:15,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 11:09:46] 2025-12-13 16:09:15,715 | INFO     | aborting loop
[2025-12-13 11:09:46] 2025-12-13 16:09:16,184 | INFO     | all payload control threads have been joined
[2025-12-13 11:09:46] 2025-12-13 16:09:16,293 | INFO     | all job control threads have been joined
[2025-12-13 11:09:46] 2025-12-13 16:09:16,719 | INFO     | [job] retrieve thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:16,720 | INFO     | [job] job monitor thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:16,751 | INFO     | all data control threads have been joined
[2025-12-13 11:09:46] 2025-12-13 16:09:16,768 | INFO     | [job] validate thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:16,926 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,126 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,189 | INFO     | [payload] control thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,236 | INFO     | [payload] failed_post thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,299 | INFO     | [job] control thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,720 | INFO     | [data] copytool_out thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,757 | INFO     | [data] control thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,812 | INFO     | [payload] validate_post thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,812 | INFO     | [data] copytool_in thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:17,837 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:18,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 11:09:46] 2025-12-13 16:09:18,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 11:09:46] 2025-12-13 16:09:19,604 | INFO     | [job] queue monitor thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:22,037 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:26,253 | INFO     | job.realtimelogging is not enabled
[2025-12-13 11:09:46] 2025-12-13 16:09:27,256 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 11:09:46] 2025-12-13 16:09:36,432 | INFO     | [monitor] cgroup control has ended
[2025-12-13 11:09:46] 2025-12-13 16:09:37,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140297818113856)>', '<ExcThread(monitor, started 140297254205184)>']
[2025-12-13 11:09:46] 2025-12-13 16:09:42,122 | INFO     | all workflow threads have been joined
[2025-12-13 11:09:46] 2025-12-13 16:09:42,132 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 11:09:46] 2025-12-13 16:09:42,132 | INFO     | traces error code: 0
[2025-12-13 11:09:46] 2025-12-13 16:09:42,133 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 11:09:46] 2025-12-13 16:09:46,037 | INFO     | PID=30125 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 11:09:46] 2025-12-13 16:09:46,038 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 11:09:46] 2025-12-13 16:09:46,038 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 11:09:46] 2025-12-13 16:09:46,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 11:09:46] 2025-12-13 16:09:46,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 11:09:46] 2025-12-13 16:09:46,038 | INFO     | [monitor] control thread has ended
[2025-12-13 11:09:46] 2025-12-13 16:09:46,130 [wrapper] ==== pilot stdout END ====
[2025-12-13 11:09:46] 2025-12-13 16:09:46,133 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 11:09:46] 2025-12-13 16:09:46,137 [wrapper] pilotpid: 30125
[2025-12-13 11:09:46] 2025-12-13 16:09:46,142 [wrapper] Pilot exit status: 0
[2025-12-13 11:09:46] 2025-12-13 16:09:46,158 [wrapper] pandaids: 6929222259
[2025-12-13 11:09:46] 2025-12-13 16:09:46,200 [wrapper] cleanup supervisor_pilot 32429 30126
[2025-12-13 11:09:46] 2025-12-13 16:09:46,204 [wrapper] Test setup, not cleaning
[2025-12-13 11:09:46] 2025-12-13 16:09:46,207 [wrapper] apfmon messages muted
[2025-12-13 11:09:46] 2025-12-13 16:09:46,211 [wrapper] ==== wrapper stdout END ====
[2025-12-13 11:09:46] 2025-12-13 16:09:46,215 [wrapper] ==== wrapper stderr END ====
[2025-12-13 11:09:46]  *** Error codes and diagnostics ***
[2025-12-13 11:09:46]     "exeErrorCode": 0,
[2025-12-13 11:09:46]     "exeErrorDiag": "",
[2025-12-13 11:09:46]     "pilotErrorCode": 0,
[2025-12-13 11:09:46]     "pilotErrorDiag": "",
[2025-12-13 11:09:46]  *** Listing of results directory ***
[2025-12-13 11:09:46] total 338752
[2025-12-13 11:09:46] -rwx------ 1 boincer umatlas     36322 Dec 13 03:50 runpilot2-wrapper.sh
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 03:53 queuedata.json
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas       100 Dec 13 09:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 11:09:46] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 09:52 run_atlas
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas       105 Dec 13 09:52 job.xml
[2025-12-13 11:09:46] -rw-r--r-- 2 boincer umatlas 191393420 Dec 13 09:52 EVNT.47886829._000172.pool.root.1
[2025-12-13 11:09:46] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 09:52 start_atlas.sh
[2025-12-13 11:09:46] drwxrwx--x 2 boincer umatlas      4096 Dec 13 09:52 shared
[2025-12-13 11:09:46] -rw-r--r-- 2 boincer umatlas    592416 Dec 13 09:52 input.tar.gz
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas         0 Dec 13 09:52 boinc_lockfile
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas      2537 Dec 13 09:52 pandaJob.out
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas        57 Dec 13 09:52 setup.sh.local
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas    991736 Dec 13 09:52 agis_schedconf.cvmfs.json
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas   1516240 Dec 13 09:52 agis_ddmendpoints.agis.ALL.json
[2025-12-13 11:09:46] drwx------ 5 boincer umatlas      4096 Dec 13 09:52 pilot3
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas 149488902 Dec 13 11:08 HITS.47886831._004291.pool.root.1
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas       529 Dec 13 11:08 boinc_task_state.xml
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas      1044 Dec 13 11:09 memory_monitor_summary.json
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas    379526 Dec 13 11:09 log.47886831._004291.job.log.tgz.1
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas      7854 Dec 13 11:09 heartbeat.json
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 11:09 init_data.xml
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 11:09 boinc_mmap_file
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas        27 Dec 13 11:09 wrapper_checkpoint.txt
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas        95 Dec 13 11:09 pilot_heartbeat.json
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas       745 Dec 13 11:09 pilotlog.txt
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas    666680 Dec 13 11:09 log.47886831._004291.job.log.1
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas       357 Dec 13 11:09 output.list
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas       620 Dec 13 11:09 runtime_log
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas   1064960 Dec 13 11:09 result.tar.gz
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 11:09 runtime_log.err
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas       658 Dec 13 11:09 bVBODm7Vao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnKOKDmkpzium.diag
[2025-12-13 11:09:46] -rw-r--r-- 1 boincer umatlas     22436 Dec 13 11:09 stderr.txt
[2025-12-13 11:09:46] HITS file was successfully produced:
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas 149488902 Dec 13 11:08 shared/HITS.pool.root.1
[2025-12-13 11:09:46]  *** Contents of shared directory: ***
[2025-12-13 11:09:46] total 334532
[2025-12-13 11:09:46] -rw-r--r-- 2 boincer umatlas 191393420 Dec 13 09:52 ATLAS.root_0
[2025-12-13 11:09:46] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 09:52 start_atlas.sh
[2025-12-13 11:09:46] -rw-r--r-- 2 boincer umatlas    592416 Dec 13 09:52 input.tar.gz
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas 149488902 Dec 13 11:08 HITS.pool.root.1
[2025-12-13 11:09:46] -rw------- 1 boincer umatlas   1064960 Dec 13 11:09 result.tar.gz
11:09:47 (26449): run_atlas exited; CPU time 49486.110908
11:09:47 (26449): called boinc_finish(0)

</stderr_txt>
]]>

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