Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:13:49 (2491089): wrapper (7.7.26015): starting
12:13:49 (2491089): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 12:13:49] Arguments: --nthreads 8
[2025-12-13 12:13:49] Threads: 8
[2025-12-13 12:13:49] Checking for CVMFS
[2025-12-13 12:13:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 12:13:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 12:13:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 12:13:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 12:13:51] 2.13.2.0 9432 58607 242536 153967 0 146 27524908 39288833 8011 16776704 0 45587923 99.678 42306011 39409 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 12:13:51] CVMFS is ok
[2025-12-13 12:13:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 12:13:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 12:13:51] Further information can be found at the LHC@home message board.
[2025-12-13 12:13:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 12:13:51] Checking for apptainer binary...
[2025-12-13 12:13:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 12:13:51] Running /usr/bin/apptainer --version
[2025-12-13 12:13:51] apptainer version 1.4.4-1.el9
[2025-12-13 12:13:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 12:13:51] c-211-5.aglt2.org
[2025-12-13 12:13:51] apptainer works
[2025-12-13 12:13:51] Set ATHENA_PROC_NUMBER=8
[2025-12-13 12:13:51] Set ATHENA_CORE_NUMBER=8
[2025-12-13 12:13:52] Starting ATLAS job with PandaID=6929221953
[2025-12-13 12:13:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 16:59:19]  *** The last 200 lines of the pilot log: ***
[2025-12-13 16:59:19] 2025-12-13 21:58:43,367 | INFO     | executing command: lscpu
[2025-12-13 16:59:19] 2025-12-13 21:58:43,405 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 16:59:19] 2025-12-13 21:58:43,485 | INFO     | monitor loop #1115: job 0:6929221953 is in state 'finished'
[2025-12-13 16:59:19] 2025-12-13 21:58:43,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:59:19] 2025-12-13 21:58:44,266 | INFO     | time since job start (17044s) is within the limit (174528.0s)
[2025-12-13 16:59:19] 2025-12-13 21:58:45,987 | INFO     | monitor loop #1116: job 0:6929221953 is in state 'finished'
[2025-12-13 16:59:19] 2025-12-13 21:58:45,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:59:19] 2025-12-13 21:58:46,271 | INFO     | time since job start (17046s) is within the limit (174528.0s)
[2025-12-13 16:59:19] 2025-12-13 21:58:46,909 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 16:59:19] 2025-12-13 21:58:46,916 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2700.1688749999994
[2025-12-13 16:59:19] 2025-12-13 21:58:46,923 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929221953/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 16:59:19] 2025-12-13 21:58:46,924 | INFO     | extracted standard info from prmon json
[2025-12-13 16:59:19] 2025-12-13 21:58:46,924 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 16:59:19] 2025-12-13 21:58:46,924 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 16:59:19] 2025-12-13 21:58:46,924 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 16:59:19] 2025-12-13 21:58:46,925 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 16:59:19] 2025-12-13 21:58:46,930 | INFO     | fitting pss+swap vs Time
[2025-12-13 16:59:19] 2025-12-13 21:58:46,931 | INFO     | sum of square deviations: 6662184861.269772
[2025-12-13 16:59:19] 2025-12-13 21:58:46,933 | INFO     | sum of deviations: -43526683744.50001
[2025-12-13 16:59:19] 2025-12-13 21:58:46,933 | INFO     | mean x: 1765654621.471223
[2025-12-13 16:59:19] 2025-12-13 21:58:46,934 | INFO     | mean y: 2584610.5
[2025-12-13 16:59:19] 2025-12-13 21:58:46,934 | INFO     | intersect: 11538303284.050148
[2025-12-13 16:59:19] 2025-12-13 21:58:46,934 | INFO     | chi2: 2.8521269397254434
[2025-12-13 16:59:19] 2025-12-13 21:58:46,935 | INFO     | sum of square deviations: 6309228028.96701
[2025-12-13 16:59:19] 2025-12-13 21:58:46,937 | INFO     | sum of deviations: -42132694930.637375
[2025-12-13 16:59:19] 2025-12-13 21:58:46,937 | INFO     | mean x: 1765654468.989011
[2025-12-13 16:59:19] 2025-12-13 21:58:46,937 | INFO     | mean y: 2585212.7875457876
[2025-12-13 16:59:19] 2025-12-13 21:58:46,937 | INFO     | intersect: 11793533448.178947
[2025-12-13 16:59:19] 2025-12-13 21:58:46,938 | INFO     | chi2: 2.850186013228363
[2025-12-13 16:59:19] 2025-12-13 21:58:46,938 | INFO     | current chi2=2.850186013228363 (change=0.0680518973418154 %)
[2025-12-13 16:59:19] 2025-12-13 21:58:46,938 | INFO     | right removable region: 272
[2025-12-13 16:59:19] 2025-12-13 21:58:46,939 | INFO     | sum of square deviations: 6309063328.967016
[2025-12-13 16:59:19] 2025-12-13 21:58:46,941 | INFO     | sum of deviations: -108547138975.68134
[2025-12-13 16:59:19] 2025-12-13 21:58:46,941 | INFO     | mean x: 1765654773.989011
[2025-12-13 16:59:19] 2025-12-13 21:58:46,941 | INFO     | mean y: 2612563.1062271064
[2025-12-13 16:59:19] 2025-12-13 21:58:46,941 | INFO     | intersect: 30380620223.18156
[2025-12-13 16:59:19] 2025-12-13 21:58:46,942 | INFO     | chi2: 0.52220734418411
[2025-12-13 16:59:19] 2025-12-13 21:58:46,942 | INFO     | current chi2=0.52220734418411 (change=81.69059949925021 %)
[2025-12-13 16:59:19] 2025-12-13 21:58:46,942 | INFO     | sum of square deviations: 5968656118.996246
[2025-12-13 16:59:19] 2025-12-13 21:58:46,944 | INFO     | sum of deviations: -113431574432.99997
[2025-12-13 16:59:19] 2025-12-13 21:58:46,944 | INFO     | mean x: 1765654926.5037313
[2025-12-13 16:59:19] 2025-12-13 21:58:46,945 | INFO     | mean y: 2614732.0
[2025-12-13 16:59:19] 2025-12-13 21:58:46,945 | INFO     | intersect: 33558077507.158592
[2025-12-13 16:59:19] 2025-12-13 21:58:46,945 | INFO     | chi2: 0.46514464945447914
[2025-12-13 16:59:19] 2025-12-13 21:58:46,945 | INFO     | current chi2=0.46514464945447914 (change=10.927210305474514 %)
[2025-12-13 16:59:19] 2025-12-13 21:58:46,945 | INFO     | left removable region: 20
[2025-12-13 16:59:19] 2025-12-13 21:58:46,946 | INFO     | sum of square deviations: 4962246750.678535
[2025-12-13 16:59:19] 2025-12-13 21:58:46,948 | INFO     | sum of deviations: -91953362398.89287
[2025-12-13 16:59:19] 2025-12-13 21:58:46,948 | INFO     | mean x: 1765655048.5357144
[2025-12-13 16:59:19] 2025-12-13 21:58:46,948 | INFO     | mean y: 2606996.488095238
[2025-12-13 16:59:19] 2025-12-13 21:58:46,948 | INFO     | intersect: 32721237630.331234
[2025-12-13 16:59:19] 2025-12-13 21:58:46,949 | INFO     | chi2: 0.43846428898844875
[2025-12-13 16:59:19] 2025-12-13 21:58:46,949 | INFO     | current memory leak: -18.53 B/s (using 252 data points, chi2=0.44)
[2025-12-13 16:59:19] 2025-12-13 21:58:46,949 | INFO     | could have reported an average CPU frequency of 2607 MHz (13 samples)
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | ..............................
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | . Timing measurements:
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | . get job = 0 s
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | . initial setup = 6 s
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | . payload setup = 30 s
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | . stage-in = 0 s
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | . payload execution = 16957 s
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | . stage-out = 2 s
[2025-12-13 16:59:19] 2025-12-13 21:58:46,950 | INFO     | . log creation = 0 s
[2025-12-13 16:59:19] 2025-12-13 21:58:46,951 | INFO     | ..............................
[2025-12-13 16:59:19] 2025-12-13 21:58:47,055 | INFO     | 
[2025-12-13 16:59:19] 2025-12-13 21:58:47,055 | INFO     | job summary report
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | --------------------------------------------------
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | PanDA job id: 6929221953
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | task id: 47886831
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | errors: (none)
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | pilot state: finished 
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | transexitcode: 0
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | exeerrorcode: 0
[2025-12-13 16:59:19] 2025-12-13 21:58:47,056 | INFO     | exeerrordiag: 
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | exitcode: 0
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | exitmsg: OK
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | cpuconsumptiontime: 52230 s
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | nevents: 400
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | neventsw: 0
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | pid: 2501677
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | pgrp: 2501677
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | corecount: 8
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | event service: False
[2025-12-13 16:59:19] 2025-12-13 21:58:47,057 | INFO     | sizes: {0: 2283762, 1: 2283846, 2: 2284045, 13: 2284045, 17: 2284363, 23: 2284391, 16992: 2316640, 16994: 2325694, 16998: 2325832}
[2025-12-13 16:59:19] 2025-12-13 21:58:47,058 | INFO     | --------------------------------------------------
[2025-12-13 16:59:19] 2025-12-13 21:58:47,058 | INFO     | 
[2025-12-13 16:59:19] 2025-12-13 21:58:47,058 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 16:59:19] 2025-12-13 21:58:47,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,079 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 16:59:19] 2025-12-13 21:58:47,080 | INFO     | job 6929221953 has completed (purged errors)
[2025-12-13 16:59:19] 2025-12-13 21:58:47,080 | INFO     | overall cleanup function is called
[2025-12-13 16:59:19] 2025-12-13 21:58:48,088 | INFO     | --- collectZombieJob: --- 10, [2501677]
[2025-12-13 16:59:19] 2025-12-13 21:58:48,088 | INFO     | zombie collector waiting for pid 2501677
[2025-12-13 16:59:19] 2025-12-13 21:58:48,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 16:59:19] 2025-12-13 21:58:48,089 | INFO     | collected zombie processes
[2025-12-13 16:59:19] 2025-12-13 21:58:48,089 | INFO     | will attempt to kill all subprocesses of pid=2501677
[2025-12-13 16:59:19] 2025-12-13 21:58:48,295 | INFO     | process IDs to be killed: [2501677] (in reverse order)
[2025-12-13 16:59:19] 2025-12-13 21:58:48,355 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 16:59:19] 2025-12-13 21:58:48,355 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 16:59:19] 2025-12-13 21:58:48,362 | INFO     | did not find any defunct processes belonging to 2501677
[2025-12-13 16:59:19] 2025-12-13 21:58:48,369 | INFO     | did not find any defunct processes belonging to 2501677
[2025-12-13 16:59:19] 2025-12-13 21:58:48,369 | INFO     | ready for new job
[2025-12-13 16:59:19] 2025-12-13 21:58:48,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 16:59:19] 2025-12-13 21:58:48,372 | INFO     | ***************************************
[2025-12-13 16:59:19] 2025-12-13 21:58:48,372 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 16:59:19] 2025-12-13 21:58:48,372 | INFO     | ***************************************
[2025-12-13 16:59:19] 2025-12-13 21:58:48,372 | INFO     | 
[2025-12-13 16:59:19] 2025-12-13 21:58:48,374 | INFO     | architecture information:
[2025-12-13 16:59:19] 2025-12-13 21:58:48,375 | INFO     | executing command: cat /etc/os-release
[2025-12-13 16:59:19] 2025-12-13 21:58:48,390 | INFO     | cat /etc/os-release:
[2025-12-13 16:59:19] NAME="CentOS Linux"
[2025-12-13 16:59:19] VERSION="7 (Core)"
[2025-12-13 16:59:19] ID="centos"
[2025-12-13 16:59:19] ID_LIKE="rhel fedora"
[2025-12-13 16:59:19] VERSION_ID="7"
[2025-12-13 16:59:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 16:59:19] ANSI_COLOR="0;31"
[2025-12-13 16:59:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 16:59:19] HOME_URL="https://www.centos.org/"
[2025-12-13 16:59:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 16:59:19] 
[2025-12-13 16:59:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 16:59:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 16:59:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 16:59:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 16:59:19] 
[2025-12-13 16:59:19] 2025-12-13 21:58:48,390 | INFO     | ***************************************
[2025-12-13 16:59:19] 2025-12-13 21:58:48,893 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 16:59:19] 2025-12-13 21:58:48,907 | INFO     | sufficient remaining disk space (53701771264 B)
[2025-12-13 16:59:19] 2025-12-13 21:58:48,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 16:59:19] 2025-12-13 21:58:48,907 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 16:59:19] 2025-12-13 21:58:48,907 | INFO     | update_server=False
[2025-12-13 16:59:19] 2025-12-13 21:58:48,907 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 16:59:19] 2025-12-13 21:58:48,908 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 16:59:19] 2025-12-13 21:58:48,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:59:19] 2025-12-13 21:58:49,052 | INFO     | all job control threads have been joined
[2025-12-13 16:59:19] 2025-12-13 21:58:49,360 | INFO     | all data control threads have been joined
[2025-12-13 16:59:19] 2025-12-13 21:58:49,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 16:59:19] 2025-12-13 21:58:49,485 | INFO     | all payload control threads have been joined
[2025-12-13 16:59:19] 2025-12-13 21:58:49,499 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:59:19] 2025-12-13 21:58:49,499 | INFO     | aborting loop
[2025-12-13 16:59:19] 2025-12-13 21:58:49,913 | INFO     | [job] retrieve thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:49,914 | INFO     | [job] queue monitor thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,057 | INFO     | [job] control thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,059 | INFO     | [payload] validate_post thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,150 | INFO     | [job] validate thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,249 | INFO     | [data] copytool_in thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,366 | INFO     | [data] control thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,491 | INFO     | [payload] control thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,504 | INFO     | [job] job monitor thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,777 | INFO     | [payload] failed_post thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,888 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,908 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:50,913 | INFO     | [data] copytool_out thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:51,134 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:51,381 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:58:53,376 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 16:59:19] 2025-12-13 21:59:10,081 | INFO     | [monitor] cgroup control has ended
[2025-12-13 16:59:19] 2025-12-13 21:59:11,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140678256449344)>', '<ExcThread(monitor, started 140677983737600)>']
[2025-12-13 16:59:19] 2025-12-13 21:59:16,470 | INFO     | all workflow threads have been joined
[2025-12-13 16:59:19] 2025-12-13 21:59:16,470 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 16:59:19] 2025-12-13 21:59:16,470 | INFO     | traces error code: 0
[2025-12-13 16:59:19] 2025-12-13 21:59:16,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 16:59:19] 2025-12-13 21:59:19,603 | INFO     | PID=2495053 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 16:59:19] 2025-12-13 21:59:19,603 | INFO     | .. there are 6 such processes running
[2025-12-13 16:59:19] 2025-12-13 21:59:19,604 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 16:59:19] 2025-12-13 21:59:19,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 16:59:19] 2025-12-13 21:59:19,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 16:59:19] 2025-12-13 21:59:19,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 16:59:19] 2025-12-13 21:59:19,604 | CRITICAL | thread 'MainThread' is not alive
[2025-12-13 16:59:19] 2025-12-13 21:59:19,604 | INFO     | [monitor] control thread has ended
[2025-12-13 16:59:19] 2025-12-13 21:59:19,737 [wrapper] ==== pilot stdout END ====
[2025-12-13 16:59:19] 2025-12-13 21:59:19,740 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 16:59:19] 2025-12-13 21:59:19,743 [wrapper] pilotpid: 2495053
[2025-12-13 16:59:19] 2025-12-13 21:59:19,745 [wrapper] Pilot exit status: 0
[2025-12-13 16:59:19] 2025-12-13 21:59:19,755 [wrapper] pandaids: 6929221953
[2025-12-13 16:59:19] 2025-12-13 21:59:19,793 [wrapper] cleanup supervisor_pilot 2793532 2495054
[2025-12-13 16:59:19] 2025-12-13 21:59:19,796 [wrapper] Test setup, not cleaning
[2025-12-13 16:59:19] 2025-12-13 21:59:19,799 [wrapper] apfmon messages muted
[2025-12-13 16:59:19] 2025-12-13 21:59:19,801 [wrapper] ==== wrapper stdout END ====
[2025-12-13 16:59:19] 2025-12-13 21:59:19,803 [wrapper] ==== wrapper stderr END ====
[2025-12-13 16:59:19]  *** Error codes and diagnostics ***
[2025-12-13 16:59:19]     "exeErrorCode": 0,
[2025-12-13 16:59:19]     "exeErrorDiag": "",
[2025-12-13 16:59:19]     "pilotErrorCode": 0,
[2025-12-13 16:59:19]     "pilotErrorDiag": "",
[2025-12-13 16:59:19]  *** Listing of results directory ***
[2025-12-13 16:59:19] total 340948
[2025-12-13 16:59:19] -rwx------. 1 boincer umatlas     36322 Dec 13 03:50 runpilot2-wrapper.sh
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 03:51 queuedata.json
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas       100 Dec 13 12:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 16:59:19] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 12:13 run_atlas
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas       105 Dec 13 12:13 job.xml
[2025-12-13 16:59:19] -rw-r--r--. 2 boincer umatlas 193517161 Dec 13 12:13 EVNT.47886829._000161.pool.root.1
[2025-12-13 16:59:19] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 12:13 start_atlas.sh
[2025-12-13 16:59:19] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 12:13 shared
[2025-12-13 16:59:19] -rw-r--r--. 2 boincer umatlas    592408 Dec 13 12:13 input.tar.gz
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas         0 Dec 13 12:13 boinc_lockfile
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas      2537 Dec 13 12:13 pandaJob.out
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas        57 Dec 13 12:13 setup.sh.local
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas    991736 Dec 13 12:14 agis_schedconf.cvmfs.json
[2025-12-13 16:59:19] drwx------. 5 boincer umatlas      4096 Dec 13 12:14 pilot3
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas      6660 Dec 13 16:54 init_data.xml
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas 146189138 Dec 13 16:58 HITS.47886831._004028.pool.root.1
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas       531 Dec 13 16:58 boinc_task_state.xml
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas        95 Dec 13 16:58 pilot_heartbeat.json
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas      1037 Dec 13 16:58 memory_monitor_summary.json
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas   1516240 Dec 13 16:58 agis_ddmendpoints.agis.ALL.json
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas    507374 Dec 13 16:58 log.47886831._004028.job.log.tgz.1
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas      7818 Dec 13 16:58 heartbeat.json
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas        28 Dec 13 16:59 wrapper_checkpoint.txt
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 16:59 boinc_mmap_file
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas       892 Dec 13 16:59 pilotlog.txt
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas   2245868 Dec 13 16:59 log.47886831._004028.job.log.1
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas       357 Dec 13 16:59 output.list
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas       620 Dec 13 16:59 runtime_log
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas   2775040 Dec 13 16:59 result.tar.gz
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas       655 Dec 13 16:59 vmWKDmXVao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAIOKDmEFyQxn.diag
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas      9338 Dec 13 16:59 runtime_log.err
[2025-12-13 16:59:19] -rw-r--r--. 1 boincer umatlas     21424 Dec 13 16:59 stderr.txt
[2025-12-13 16:59:19] HITS file was successfully produced:
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas 146189138 Dec 13 16:58 shared/HITS.pool.root.1
[2025-12-13 16:59:19]  *** Contents of shared directory: ***
[2025-12-13 16:59:19] total 335060
[2025-12-13 16:59:19] -rw-r--r--. 2 boincer umatlas 193517161 Dec 13 12:13 ATLAS.root_0
[2025-12-13 16:59:19] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 12:13 start_atlas.sh
[2025-12-13 16:59:19] -rw-r--r--. 2 boincer umatlas    592408 Dec 13 12:13 input.tar.gz
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas 146189138 Dec 13 16:58 HITS.pool.root.1
[2025-12-13 16:59:19] -rw-------. 1 boincer umatlas   2775040 Dec 13 16:59 result.tar.gz
16:59:21 (2491089): run_atlas exited; CPU time 52545.743918
16:59:21 (2491089): called boinc_finish(0)

</stderr_txt>
]]>

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