Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:49:33 (8444): wrapper (7.7.26015): starting
08:49:33 (8444): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 08:49:33] Arguments: --nthreads 8
[2025-12-13 08:49:33] Threads: 8
[2025-12-13 08:49:33] Checking for CVMFS
[2025-12-13 08:49:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 08:49:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 08:49:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 08:49:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 08:49:34] 2.11.2.0 2787 186112 82680 153962 2 59 14330029 20275201 1 130560 2 71810537 99.945 8207361 24871 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 08:49:34] CVMFS is ok
[2025-12-13 08:49:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 08:49:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 08:49:34] Further information can be found at the LHC@home message board.
[2025-12-13 08:49:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 08:49:34] Checking for apptainer binary...
[2025-12-13 08:49:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 08:49:34] Running /usr/bin/apptainer --version
[2025-12-13 08:49:34] apptainer version 1.3.2-1.el7
[2025-12-13 08:49:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 08:49:36] c-115-2.aglt2.org
[2025-12-13 08:49:36] apptainer works
[2025-12-13 08:49:36] Set ATHENA_PROC_NUMBER=8
[2025-12-13 08:49:36] Set ATHENA_CORE_NUMBER=8
[2025-12-13 08:49:36] Starting ATLAS job with PandaID=6929264587
[2025-12-13 08:49:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 11:32:16]  *** The last 200 lines of the pilot log: ***
[2025-12-13 11:32:16] 2025-12-13 16:31:36,401 | INFO     | monitor loop #711: job 0:6929264587 is in state 'finished'
[2025-12-13 11:32:16] 2025-12-13 16:31:36,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,042 | INFO     | time since job start (9703s) is within the limit (174528.0s)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,964 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 11:32:16] 2025-12-13 16:31:37,966 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-12-13 11:32:16] 2025-12-13 16:31:37,968 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929264587/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,968 | INFO     | extracted standard info from prmon json
[2025-12-13 11:32:16] 2025-12-13 16:31:37,968 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 11:32:16] 2025-12-13 16:31:37,968 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 11:32:16] 2025-12-13 16:31:37,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 11:32:16] 2025-12-13 16:31:37,969 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 11:32:16] 2025-12-13 16:31:37,971 | INFO     | fitting pss+swap vs Time
[2025-12-13 11:32:16] 2025-12-13 16:31:37,972 | INFO     | sum of square deviations: 1246386160.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,973 | INFO     | sum of deviations: -2518009606.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,973 | INFO     | mean x: 1765638644.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,973 | INFO     | mean y: 2501845.7295597484
[2025-12-13 11:32:16] 2025-12-13 16:31:37,973 | INFO     | intersect: 3569530435.261406
[2025-12-13 11:32:16] 2025-12-13 16:31:37,974 | INFO     | chi2: 2.264406917826621
[2025-12-13 11:32:16] 2025-12-13 16:31:37,974 | INFO     | sum of square deviations: 1132458442.5
[2025-12-13 11:32:16] 2025-12-13 16:31:37,975 | INFO     | sum of deviations: 8067053153.000001
[2025-12-13 11:32:16] 2025-12-13 16:31:37,975 | INFO     | mean x: 1765638491.5
[2025-12-13 11:32:16] 2025-12-13 16:31:37,975 | INFO     | mean y: 2515652.909090909
[2025-12-13 11:32:16] 2025-12-13 16:31:37,975 | INFO     | intersect: -12574987437.155287
[2025-12-13 11:32:16] 2025-12-13 16:31:37,975 | INFO     | chi2: 1.4907764413430904
[2025-12-13 11:32:16] 2025-12-13 16:31:37,976 | INFO     | current chi2=1.4907764413430904 (change=34.16481686189431 %)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,976 | INFO     | sum of square deviations: 1025693650.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,977 | INFO     | sum of deviations: 7852542565.999999
[2025-12-13 11:32:16] 2025-12-13 16:31:37,977 | INFO     | mean x: 1765638339.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,977 | INFO     | mean y: 2515346.409395973
[2025-12-13 11:32:16] 2025-12-13 16:31:37,977 | INFO     | intersect: -13514922548.579071
[2025-12-13 11:32:16] 2025-12-13 16:31:37,977 | INFO     | chi2: 1.4920973628692416
[2025-12-13 11:32:16] 2025-12-13 16:31:37,977 | INFO     | current chi2=1.4920973628692416 (change=-0.08860627854845161 %)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,977 | INFO     | right removable region: 148
[2025-12-13 11:32:16] 2025-12-13 16:31:37,978 | INFO     | sum of square deviations: 1132458442.5
[2025-12-13 11:32:16] 2025-12-13 16:31:37,979 | INFO     | sum of deviations: -24463913482.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,979 | INFO     | mean x: 1765638796.5
[2025-12-13 11:32:16] 2025-12-13 16:31:37,979 | INFO     | mean y: 2530759.1818181816
[2025-12-13 11:32:16] 2025-12-13 16:31:37,979 | INFO     | intersect: 38144711643.703415
[2025-12-13 11:32:16] 2025-12-13 16:31:37,979 | INFO     | chi2: 0.9342760683463452
[2025-12-13 11:32:16] 2025-12-13 16:31:37,980 | INFO     | current chi2=0.9342760683463452 (change=58.740804888413614 %)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,980 | INFO     | sum of square deviations: 1025693650.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,981 | INFO     | sum of deviations: -24234657670.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,981 | INFO     | mean x: 1765638949.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,981 | INFO     | mean y: 2530357.8053691275
[2025-12-13 11:32:16] 2025-12-13 16:31:37,981 | INFO     | intersect: 41720303981.37571
[2025-12-13 11:32:16] 2025-12-13 16:31:37,981 | INFO     | chi2: 0.917909689011373
[2025-12-13 11:32:16] 2025-12-13 16:31:37,981 | INFO     | current chi2=0.917909689011373 (change=1.7517712258155613 %)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,981 | INFO     | left removable region: 20
[2025-12-13 11:32:16] 2025-12-13 16:31:37,982 | INFO     | sum of square deviations: 650252192.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,982 | INFO     | sum of deviations: -3761168317.0
[2025-12-13 11:32:16] 2025-12-13 16:31:37,982 | INFO     | mean x: 1765638918.5
[2025-12-13 11:32:16] 2025-12-13 16:31:37,983 | INFO     | mean y: 2529680.515625
[2025-12-13 11:32:16] 2025-12-13 16:31:37,983 | INFO     | intersect: 10215282888.003998
[2025-12-13 11:32:16] 2025-12-13 16:31:37,983 | INFO     | chi2: 0.063929049193756
[2025-12-13 11:32:16] 2025-12-13 16:31:37,983 | INFO     | current memory leak: -5.78 B/s (using 128 data points, chi2=0.06)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,983 | INFO     | could have reported an average CPU frequency of 2185 MHz (9 samples)
[2025-12-13 11:32:16] 2025-12-13 16:31:37,984 | INFO     | ..............................
[2025-12-13 11:32:16] 2025-12-13 16:31:37,984 | INFO     | . Timing measurements:
[2025-12-13 11:32:16] 2025-12-13 16:31:37,984 | INFO     | . get job = 0 s
[2025-12-13 11:32:16] 2025-12-13 16:31:37,984 | INFO     | . initial setup = 2 s
[2025-12-13 11:32:16] 2025-12-13 16:31:37,984 | INFO     | . payload setup = 8 s
[2025-12-13 11:32:16] 2025-12-13 16:31:37,984 | INFO     | . stage-in = 0 s
[2025-12-13 11:32:16] 2025-12-13 16:31:37,984 | INFO     | . payload execution = 9666 s
[2025-12-13 11:32:16] 2025-12-13 16:31:37,984 | INFO     | . stage-out = 0 s
[2025-12-13 11:32:16] 2025-12-13 16:31:37,985 | INFO     | . log creation = 0 s
[2025-12-13 11:32:16] 2025-12-13 16:31:37,985 | INFO     | ..............................
[2025-12-13 11:32:16] 2025-12-13 16:31:38,467 | INFO     | 
[2025-12-13 11:32:16] 2025-12-13 16:31:38,468 | INFO     | job summary report
[2025-12-13 11:32:16] 2025-12-13 16:31:38,468 | INFO     | --------------------------------------------------
[2025-12-13 11:32:16] 2025-12-13 16:31:38,468 | INFO     | PanDA job id: 6929264587
[2025-12-13 11:32:16] 2025-12-13 16:31:38,468 | INFO     | task id: 47898763
[2025-12-13 11:32:16] 2025-12-13 16:31:38,468 | INFO     | errors: (none)
[2025-12-13 11:32:16] 2025-12-13 16:31:38,469 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 11:32:16] 2025-12-13 16:31:38,469 | INFO     | pilot state: finished 
[2025-12-13 11:32:16] 2025-12-13 16:31:38,469 | INFO     | transexitcode: 0
[2025-12-13 11:32:16] 2025-12-13 16:31:38,469 | INFO     | exeerrorcode: 0
[2025-12-13 11:32:16] 2025-12-13 16:31:38,469 | INFO     | exeerrordiag: 
[2025-12-13 11:32:16] 2025-12-13 16:31:38,470 | INFO     | exitcode: 0
[2025-12-13 11:32:16] 2025-12-13 16:31:38,470 | INFO     | exitmsg: OK
[2025-12-13 11:32:16] 2025-12-13 16:31:38,470 | INFO     | cpuconsumptiontime: 72182 s
[2025-12-13 11:32:16] 2025-12-13 16:31:38,470 | INFO     | nevents: 400
[2025-12-13 11:32:16] 2025-12-13 16:31:38,470 | INFO     | neventsw: 0
[2025-12-13 11:32:16] 2025-12-13 16:31:38,470 | INFO     | pid: 20161
[2025-12-13 11:32:16] 2025-12-13 16:31:38,471 | INFO     | pgrp: 20161
[2025-12-13 11:32:16] 2025-12-13 16:31:38,471 | INFO     | corecount: 8
[2025-12-13 11:32:16] 2025-12-13 16:31:38,471 | INFO     | event service: False
[2025-12-13 11:32:16] 2025-12-13 16:31:38,471 | INFO     | sizes: {0: 2283780, 1: 2283979, 6: 2284241, 11: 2284269, 9677: 2312773, 9680: 2321955, 9686: 2322157}
[2025-12-13 11:32:16] 2025-12-13 16:31:38,471 | INFO     | --------------------------------------------------
[2025-12-13 11:32:16] 2025-12-13 16:31:38,471 | INFO     | 
[2025-12-13 11:32:16] 2025-12-13 16:31:38,472 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 11:32:16] 2025-12-13 16:31:38,499 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,500 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,500 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,500 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,500 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,500 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,500 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,501 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,501 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,501 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,502 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,502 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,502 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,502 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,502 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,502 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 11:32:16] 2025-12-13 16:31:38,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,503 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 11:32:16] 2025-12-13 16:31:38,503 | INFO     | job 6929264587 has completed (purged errors)
[2025-12-13 11:32:16] 2025-12-13 16:31:38,503 | INFO     | overall cleanup function is called
[2025-12-13 11:32:16] 2025-12-13 16:31:39,510 | INFO     | --- collectZombieJob: --- 10, [20161]
[2025-12-13 11:32:16] 2025-12-13 16:31:39,511 | INFO     | zombie collector waiting for pid 20161
[2025-12-13 11:32:16] 2025-12-13 16:31:39,511 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 11:32:16] 2025-12-13 16:31:39,511 | INFO     | collected zombie processes
[2025-12-13 11:32:16] 2025-12-13 16:31:39,511 | INFO     | will attempt to kill all subprocesses of pid=20161
[2025-12-13 11:32:16] 2025-12-13 16:31:39,596 | INFO     | process IDs to be killed: [20161] (in reverse order)
[2025-12-13 11:32:16] 2025-12-13 16:31:39,650 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 11:32:16] 2025-12-13 16:31:39,651 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 11:32:16] 2025-12-13 16:31:39,655 | INFO     | did not find any defunct processes belonging to 20161
[2025-12-13 11:32:16] 2025-12-13 16:31:39,658 | INFO     | did not find any defunct processes belonging to 20161
[2025-12-13 11:32:16] 2025-12-13 16:31:39,659 | INFO     | ready for new job
[2025-12-13 11:32:16] 2025-12-13 16:31:39,659 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 11:32:16] 2025-12-13 16:31:39,661 | INFO     | ***************************************
[2025-12-13 11:32:16] 2025-12-13 16:31:39,661 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 11:32:16] 2025-12-13 16:31:39,661 | INFO     | ***************************************
[2025-12-13 11:32:16] 2025-12-13 16:31:39,661 | INFO     | 
[2025-12-13 11:32:16] 2025-12-13 16:31:39,662 | INFO     | architecture information:
[2025-12-13 11:32:16] 2025-12-13 16:31:39,662 | INFO     | executing command: cat /etc/os-release
[2025-12-13 11:32:16] 2025-12-13 16:31:39,680 | INFO     | cat /etc/os-release:
[2025-12-13 11:32:16] NAME="CentOS Linux"
[2025-12-13 11:32:16] VERSION="7 (Core)"
[2025-12-13 11:32:16] ID="centos"
[2025-12-13 11:32:16] ID_LIKE="rhel fedora"
[2025-12-13 11:32:16] VERSION_ID="7"
[2025-12-13 11:32:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 11:32:16] ANSI_COLOR="0;31"
[2025-12-13 11:32:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 11:32:16] HOME_URL="https://www.centos.org/"
[2025-12-13 11:32:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 11:32:16] 
[2025-12-13 11:32:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 11:32:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 11:32:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 11:32:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 11:32:16] 
[2025-12-13 11:32:16] 2025-12-13 16:31:39,681 | INFO     | ***************************************
[2025-12-13 11:32:16] 2025-12-13 16:31:40,182 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 11:32:16] 2025-12-13 16:31:40,203 | INFO     | sufficient remaining disk space (18544066560 B)
[2025-12-13 11:32:16] 2025-12-13 16:31:40,203 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 11:32:16] 2025-12-13 16:31:40,203 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 11:32:16] 2025-12-13 16:31:40,203 | INFO     | update_server=False
[2025-12-13 11:32:16] 2025-12-13 16:31:40,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 11:32:16] 2025-12-13 16:31:40,204 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 11:32:16] 2025-12-13 16:31:40,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 11:32:16] 2025-12-13 16:31:40,205 | INFO     | aborting loop
[2025-12-13 11:32:16] 2025-12-13 16:31:40,402 | INFO     | all data control threads have been joined
[2025-12-13 11:32:16] 2025-12-13 16:31:41,095 | INFO     | all job control threads have been joined
[2025-12-13 11:32:16] 2025-12-13 16:31:41,207 | INFO     | [job] job monitor thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:41,209 | INFO     | [job] retrieve thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:41,408 | INFO     | [data] control thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:41,589 | INFO     | [payload] validate_post thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:41,642 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:41,653 | INFO     | all payload control threads have been joined
[2025-12-13 11:32:16] 2025-12-13 16:31:41,990 | INFO     | [job] validate thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:42,100 | INFO     | [job] control thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:42,119 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 11:32:16] 2025-12-13 16:31:42,209 | INFO     | [data] copytool_out thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:42,214 | INFO     | [payload] failed_post thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:42,285 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:42,321 | INFO     | [data] copytool_in thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:42,329 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:42,641 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:42,658 | INFO     | [payload] control thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:43,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 11:32:16] 2025-12-13 16:31:44,084 | INFO     | [job] queue monitor thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:31:46,125 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 11:32:16] 2025-12-13 16:32:10,194 | INFO     | [monitor] cgroup control has ended
[2025-12-13 11:32:16] 2025-12-13 16:32:10,253 | INFO     | PID=12483 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 11:32:16] 2025-12-13 16:32:10,254 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 11:32:16] 2025-12-13 16:32:10,254 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 11:32:16] 2025-12-13 16:32:10,254 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 11:32:16] 2025-12-13 16:32:11,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538215462720)>', '<ExcThread(monitor, started 140537461974784)>']
[2025-12-13 11:32:16] 2025-12-13 16:32:12,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 11:32:16] 2025-12-13 16:32:12,265 | INFO     | [monitor] control thread has ended
[2025-12-13 11:32:16] 2025-12-13 16:32:16,524 | INFO     | all workflow threads have been joined
[2025-12-13 11:32:16] 2025-12-13 16:32:16,525 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 11:32:16] 2025-12-13 16:32:16,525 | INFO     | traces error code: 0
[2025-12-13 11:32:16] 2025-12-13 16:32:16,526 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 11:32:16] 2025-12-13 16:32:16,630 [wrapper] ==== pilot stdout END ====
[2025-12-13 11:32:16] 2025-12-13 16:32:16,635 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 11:32:16] 2025-12-13 16:32:16,639 [wrapper] pilotpid: 12483
[2025-12-13 11:32:16] 2025-12-13 16:32:16,644 [wrapper] Pilot exit status: 0
[2025-12-13 11:32:16] 2025-12-13 16:32:16,662 [wrapper] pandaids: 6929264587
[2025-12-13 11:32:16] 2025-12-13 16:32:16,708 [wrapper] cleanup supervisor_pilot 19726 12484
[2025-12-13 11:32:16] 2025-12-13 16:32:16,714 [wrapper] Test setup, not cleaning
[2025-12-13 11:32:16] 2025-12-13 16:32:16,719 [wrapper] apfmon messages muted
[2025-12-13 11:32:16] 2025-12-13 16:32:16,724 [wrapper] ==== wrapper stdout END ====
[2025-12-13 11:32:16] 2025-12-13 16:32:16,729 [wrapper] ==== wrapper stderr END ====
[2025-12-13 11:32:16]  *** Error codes and diagnostics ***
[2025-12-13 11:32:16]     "exeErrorCode": 0,
[2025-12-13 11:32:16]     "exeErrorDiag": "",
[2025-12-13 11:32:16]     "pilotErrorCode": 0,
[2025-12-13 11:32:16]     "pilotErrorDiag": "",
[2025-12-13 11:32:16]  *** Listing of results directory ***
[2025-12-13 11:32:16] total 437820
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 05:01 pilot3.tar.gz
[2025-12-13 11:32:16] -rwx------ 1 boincer umatlas     36322 Dec 13 05:05 runpilot2-wrapper.sh
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 05:07 queuedata.json
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas       100 Dec 13 08:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 11:32:16] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 08:49 run_atlas
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas       105 Dec 13 08:49 job.xml
[2025-12-13 11:32:16] -rw-r--r-- 2 boincer umatlas 223793016 Dec 13 08:49 EVNT.47898761._000097.pool.root.1
[2025-12-13 11:32:16] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 08:49 start_atlas.sh
[2025-12-13 11:32:16] drwxrwx--x 2 boincer umatlas      4096 Dec 13 08:49 shared
[2025-12-13 11:32:16] -rw-r--r-- 2 boincer umatlas    592392 Dec 13 08:49 input.tar.gz
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas         0 Dec 13 08:49 boinc_lockfile
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas      2504 Dec 13 08:49 pandaJob.out
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas        57 Dec 13 08:49 setup.sh.local
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas    991736 Dec 13 08:49 agis_schedconf.cvmfs.json
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas   1516240 Dec 13 08:49 agis_ddmendpoints.agis.ALL.json
[2025-12-13 11:32:16] drwx------ 5 boincer umatlas      4096 Dec 13 08:49 pilot3
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas 217113667 Dec 13 11:30 HITS.47898763._001792.pool.root.1
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas       530 Dec 13 11:30 boinc_task_state.xml
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas      5908 Dec 13 11:31 init_data.xml
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas      1055 Dec 13 11:31 memory_monitor_summary.json
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas    403059 Dec 13 11:31 log.47898763._001792.job.log.tgz.1
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas      7840 Dec 13 11:31 heartbeat.json
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas        27 Dec 13 11:32 wrapper_checkpoint.txt
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 11:32 boinc_mmap_file
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas        95 Dec 13 11:32 pilot_heartbeat.json
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas      4746 Dec 13 11:32 pilotlog.txt
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas   1351139 Dec 13 11:32 log.47898763._001792.job.log.1
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas       357 Dec 13 11:32 output.list
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas       620 Dec 13 11:32 runtime_log
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas   1771520 Dec 13 11:32 result.tar.gz
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas      9337 Dec 13 11:32 runtime_log.err
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas       659 Dec 13 11:32 nJcNDmigbo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMuOKDmbGmDum.diag
[2025-12-13 11:32:16] -rw-r--r-- 1 boincer umatlas     21059 Dec 13 11:32 stderr.txt
[2025-12-13 11:32:16] HITS file was successfully produced:
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas 217113667 Dec 13 11:30 shared/HITS.pool.root.1
[2025-12-13 11:32:16]  *** Contents of shared directory: ***
[2025-12-13 11:32:16] total 432904
[2025-12-13 11:32:16] -rw-r--r-- 2 boincer umatlas 223793016 Dec 13 08:49 ATLAS.root_0
[2025-12-13 11:32:16] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 08:49 start_atlas.sh
[2025-12-13 11:32:16] -rw-r--r-- 2 boincer umatlas    592392 Dec 13 08:49 input.tar.gz
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas 217113667 Dec 13 11:30 HITS.pool.root.1
[2025-12-13 11:32:16] -rw------- 1 boincer umatlas   1771520 Dec 13 11:32 result.tar.gz
11:32:18 (8444): run_atlas exited; CPU time 72119.978560
11:32:18 (8444): called boinc_finish(0)

</stderr_txt>
]]>

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