Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:42:36 (18637): wrapper (7.7.26015): starting
08:42:36 (18637): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 08:42:36] Arguments: --nthreads 8
[2025-12-13 08:42:36] Threads: 8
[2025-12-13 08:42:36] Checking for CVMFS
[2025-12-13 08:42:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 08:42:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 08:42:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 08:42:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 08:42:36] 2.11.2.0 11495 142255 136096 153962 0 188 15590529 18432000 1833 130560 0 98619007 99.977 5786271 26399 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 08:42:36] CVMFS is ok
[2025-12-13 08:42:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 08:42:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 08:42:36] Further information can be found at the LHC@home message board.
[2025-12-13 08:42:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 08:42:36] Checking for apptainer binary...
[2025-12-13 08:42:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 08:42:36] Running /usr/bin/apptainer --version
[2025-12-13 08:42:36] apptainer version 1.3.2-1.el7
[2025-12-13 08:42:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 08:42:37] c-206-31.aglt2.org
[2025-12-13 08:42:37] apptainer works
[2025-12-13 08:42:37] Set ATHENA_PROC_NUMBER=8
[2025-12-13 08:42:37] Set ATHENA_CORE_NUMBER=8
[2025-12-13 08:42:37] Starting ATLAS job with PandaID=6929263793
[2025-12-13 08:42:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 12:55:19]  *** The last 200 lines of the pilot log: ***
[2025-12-13 12:55:19] 2025-12-13 17:54:39,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 12:55:19] 2025-12-13 17:54:40,050 | INFO     | time since job start (15112s) is within the limit (174528.0s)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,635 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 12:55:19] 2025-12-13 17:54:41,640 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2444.6666666666665
[2025-12-13 12:55:19] 2025-12-13 17:54:41,645 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929263793/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,646 | INFO     | extracted standard info from prmon json
[2025-12-13 12:55:19] 2025-12-13 17:54:41,646 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 12:55:19] 2025-12-13 17:54:41,646 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 12:55:19] 2025-12-13 17:54:41,646 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 12:55:19] 2025-12-13 17:54:41,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 12:55:19] 2025-12-13 17:54:41,653 | INFO     | fitting pss+swap vs Time
[2025-12-13 12:55:19] 2025-12-13 17:54:41,654 | INFO     | sum of square deviations: 4729621702.0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,656 | INFO     | sum of deviations: 21164472038.000008
[2025-12-13 12:55:19] 2025-12-13 17:54:41,657 | INFO     | mean x: 1765640926.5
[2025-12-13 12:55:19] 2025-12-13 17:54:41,657 | INFO     | mean y: 2480162.6612903224
[2025-12-13 12:55:19] 2025-12-13 17:54:41,657 | INFO     | intersect: -7898544564.592398
[2025-12-13 12:55:19] 2025-12-13 17:54:41,657 | INFO     | chi2: 2.2788867949012466
[2025-12-13 12:55:19] 2025-12-13 17:54:41,658 | INFO     | sum of square deviations: 4449281562.0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,660 | INFO     | sum of deviations: 37529764927.999985
[2025-12-13 12:55:19] 2025-12-13 17:54:41,661 | INFO     | mean x: 1765640774.0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,661 | INFO     | mean y: 2488915.3827160494
[2025-12-13 12:55:19] 2025-12-13 17:54:41,661 | INFO     | intersect: -14890720757.26509
[2025-12-13 12:55:19] 2025-12-13 17:54:41,662 | INFO     | chi2: 1.4647696831705574
[2025-12-13 12:55:19] 2025-12-13 17:54:41,662 | INFO     | current chi2=1.4647696831705574 (change=35.72433319426769 %)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,662 | INFO     | sum of square deviations: 4180243959.5
[2025-12-13 12:55:19] 2025-12-13 17:54:41,664 | INFO     | sum of deviations: 36763979925.5
[2025-12-13 12:55:19] 2025-12-13 17:54:41,665 | INFO     | mean x: 1765640621.5
[2025-12-13 12:55:19] 2025-12-13 17:54:41,665 | INFO     | mean y: 2488481.18907563
[2025-12-13 12:55:19] 2025-12-13 17:54:41,665 | INFO     | intersect: -15525786182.531145
[2025-12-13 12:55:19] 2025-12-13 17:54:41,666 | INFO     | chi2: 1.4652532779706395
[2025-12-13 12:55:19] 2025-12-13 17:54:41,666 | INFO     | current chi2=1.4652532779706395 (change=-0.033015074358675005 %)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,666 | INFO     | right removable region: 237
[2025-12-13 12:55:19] 2025-12-13 17:54:41,666 | INFO     | sum of square deviations: 4449281562.0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,669 | INFO     | sum of deviations: -16988519581.000002
[2025-12-13 12:55:19] 2025-12-13 17:54:41,669 | INFO     | mean x: 1765641079.0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,669 | INFO     | mean y: 2500743.5020576133
[2025-12-13 12:55:19] 2025-12-13 17:54:41,669 | INFO     | intersect: 6744179737.205956
[2025-12-13 12:55:19] 2025-12-13 17:54:41,670 | INFO     | chi2: 0.9080646895208511
[2025-12-13 12:55:19] 2025-12-13 17:54:41,670 | INFO     | current chi2=0.9080646895208511 (change=60.153146196092585 %)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,671 | INFO     | sum of square deviations: 4180243959.5
[2025-12-13 12:55:19] 2025-12-13 17:54:41,672 | INFO     | sum of deviations: -25660415519.5
[2025-12-13 12:55:19] 2025-12-13 17:54:41,672 | INFO     | mean x: 1765641231.5
[2025-12-13 12:55:19] 2025-12-13 17:54:41,672 | INFO     | mean y: 2505658.9033613447
[2025-12-13 12:55:19] 2025-12-13 17:54:41,672 | INFO     | intersect: 10840889278.999756
[2025-12-13 12:55:19] 2025-12-13 17:54:41,673 | INFO     | chi2: 0.8568984877616161
[2025-12-13 12:55:19] 2025-12-13 17:54:41,673 | INFO     | current chi2=0.8568984877616161 (change=5.634642812312551 %)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,673 | INFO     | left removable region: 20
[2025-12-13 12:55:19] 2025-12-13 17:54:41,673 | INFO     | sum of square deviations: 3168461268.0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,674 | INFO     | sum of deviations: -4954979369.999999
[2025-12-13 12:55:19] 2025-12-13 17:54:41,674 | INFO     | mean x: 1765641201.0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,674 | INFO     | mean y: 2512924.65437788
[2025-12-13 12:55:19] 2025-12-13 17:54:41,674 | INFO     | intersect: 2763700449.379715
[2025-12-13 12:55:19] 2025-12-13 17:54:41,675 | INFO     | chi2: 0.022409957598455866
[2025-12-13 12:55:19] 2025-12-13 17:54:41,675 | INFO     | current memory leak: -1.56 B/s (using 217 data points, chi2=0.02)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,675 | INFO     | could have reported an average CPU frequency of 2597 MHz (12 samples)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,675 | INFO     | ..............................
[2025-12-13 12:55:19] 2025-12-13 17:54:41,675 | INFO     | . Timing measurements:
[2025-12-13 12:55:19] 2025-12-13 17:54:41,676 | INFO     | . get job = 0 s
[2025-12-13 12:55:19] 2025-12-13 17:54:41,676 | INFO     | . initial setup = 2 s
[2025-12-13 12:55:19] 2025-12-13 17:54:41,676 | INFO     | . payload setup = 5 s
[2025-12-13 12:55:19] 2025-12-13 17:54:41,676 | INFO     | . stage-in = 0 s
[2025-12-13 12:55:19] 2025-12-13 17:54:41,676 | INFO     | . payload execution = 15078 s
[2025-12-13 12:55:19] 2025-12-13 17:54:41,676 | INFO     | . stage-out = 2 s
[2025-12-13 12:55:19] 2025-12-13 17:54:41,676 | INFO     | . log creation = 0 s
[2025-12-13 12:55:19] 2025-12-13 17:54:41,676 | INFO     | ..............................
[2025-12-13 12:55:19] 2025-12-13 17:54:41,750 | INFO     | 
[2025-12-13 12:55:19] 2025-12-13 17:54:41,750 | INFO     | job summary report
[2025-12-13 12:55:19] 2025-12-13 17:54:41,750 | INFO     | --------------------------------------------------
[2025-12-13 12:55:19] 2025-12-13 17:54:41,750 | INFO     | PanDA job id: 6929263793
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | task id: 47898763
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | errors: (none)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | pilot state: finished 
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | transexitcode: 0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | exeerrorcode: 0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | exeerrordiag: 
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | exitcode: 0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | exitmsg: OK
[2025-12-13 12:55:19] 2025-12-13 17:54:41,751 | INFO     | cpuconsumptiontime: 115281 s
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | nevents: 400
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | neventsw: 0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | pid: 28781
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | pgrp: 28781
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | corecount: 8
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | event service: False
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | sizes: {0: 2283780, 1: 2283979, 4: 2284241, 12: 2284269, 15086: 2315339, 15087: 2315338, 15089: 2324548, 15090: 2324604, 15098: 2324798}
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | --------------------------------------------------
[2025-12-13 12:55:19] 2025-12-13 17:54:41,752 | INFO     | 
[2025-12-13 12:55:19] 2025-12-13 17:54:41,753 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 12:55:19] 2025-12-13 17:54:41,768 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,769 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,770 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 12:55:19] 2025-12-13 17:54:41,771 | INFO     | job 6929263793 has completed (purged errors)
[2025-12-13 12:55:19] 2025-12-13 17:54:41,771 | INFO     | overall cleanup function is called
[2025-12-13 12:55:19] 2025-12-13 17:54:42,778 | INFO     | --- collectZombieJob: --- 10, [28781]
[2025-12-13 12:55:19] 2025-12-13 17:54:42,778 | INFO     | zombie collector waiting for pid 28781
[2025-12-13 12:55:19] 2025-12-13 17:54:42,778 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 12:55:19] 2025-12-13 17:54:42,778 | INFO     | collected zombie processes
[2025-12-13 12:55:19] 2025-12-13 17:54:42,778 | INFO     | will attempt to kill all subprocesses of pid=28781
[2025-12-13 12:55:19] 2025-12-13 17:54:42,906 | INFO     | process IDs to be killed: [28781] (in reverse order)
[2025-12-13 12:55:19] 2025-12-13 17:54:42,944 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 12:55:19] 2025-12-13 17:54:42,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 12:55:19] 2025-12-13 17:54:42,947 | INFO     | did not find any defunct processes belonging to 28781
[2025-12-13 12:55:19] 2025-12-13 17:54:42,950 | INFO     | did not find any defunct processes belonging to 28781
[2025-12-13 12:55:19] 2025-12-13 17:54:42,950 | INFO     | ready for new job
[2025-12-13 12:55:19] 2025-12-13 17:54:42,950 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 12:55:19] 2025-12-13 17:54:42,951 | INFO     | ***************************************
[2025-12-13 12:55:19] 2025-12-13 17:54:42,952 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 12:55:19] 2025-12-13 17:54:42,952 | INFO     | ***************************************
[2025-12-13 12:55:19] 2025-12-13 17:54:42,952 | INFO     | 
[2025-12-13 12:55:19] 2025-12-13 17:54:42,953 | INFO     | architecture information:
[2025-12-13 12:55:19] 2025-12-13 17:54:42,953 | INFO     | executing command: cat /etc/os-release
[2025-12-13 12:55:19] 2025-12-13 17:54:42,962 | INFO     | cat /etc/os-release:
[2025-12-13 12:55:19] NAME="CentOS Linux"
[2025-12-13 12:55:19] VERSION="7 (Core)"
[2025-12-13 12:55:19] ID="centos"
[2025-12-13 12:55:19] ID_LIKE="rhel fedora"
[2025-12-13 12:55:19] VERSION_ID="7"
[2025-12-13 12:55:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 12:55:19] ANSI_COLOR="0;31"
[2025-12-13 12:55:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 12:55:19] HOME_URL="https://www.centos.org/"
[2025-12-13 12:55:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 12:55:19] 
[2025-12-13 12:55:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 12:55:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 12:55:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 12:55:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 12:55:19] 
[2025-12-13 12:55:19] 2025-12-13 17:54:42,963 | INFO     | ***************************************
[2025-12-13 12:55:19] 2025-12-13 17:54:43,465 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 12:55:19] 2025-12-13 17:54:43,478 | INFO     | sufficient remaining disk space (28272754688 B)
[2025-12-13 12:55:19] 2025-12-13 17:54:43,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 12:55:19] 2025-12-13 17:54:43,479 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 12:55:19] 2025-12-13 17:54:43,479 | INFO     | update_server=False
[2025-12-13 12:55:19] 2025-12-13 17:54:43,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 12:55:19] 2025-12-13 17:54:43,480 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:55:19] 2025-12-13 17:54:43,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 12:55:19] 2025-12-13 17:54:43,480 | INFO     | aborting loop
[2025-12-13 12:55:19] 2025-12-13 17:54:43,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 12:55:19] 2025-12-13 17:54:43,874 | INFO     | all payload control threads have been joined
[2025-12-13 12:55:19] 2025-12-13 17:54:44,085 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 12:55:19] 2025-12-13 17:54:44,139 | INFO     | all data control threads have been joined
[2025-12-13 12:55:19] 2025-12-13 17:54:44,279 | INFO     | all job control threads have been joined
[2025-12-13 12:55:19] 2025-12-13 17:54:44,485 | INFO     | [job] retrieve thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:44,485 | INFO     | [job] queue monitor thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:44,486 | INFO     | [job] job monitor thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:44,537 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:44,713 | INFO     | [data] copytool_in thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:44,736 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:44,880 | INFO     | [payload] control thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:45,144 | INFO     | [data] control thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:45,284 | INFO     | [job] control thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:45,517 | INFO     | [job] validate thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:45,672 | INFO     | [payload] failed_post thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:45,674 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:45,700 | INFO     | [data] copytool_out thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:45,760 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:45,883 | INFO     | [payload] validate_post thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:54:48,091 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 12:55:19] 2025-12-13 17:55:12,485 | INFO     | [monitor] cgroup control has ended
[2025-12-13 12:55:19] 2025-12-13 17:55:13,267 | INFO     | PID=22306 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 12:55:19] 2025-12-13 17:55:13,267 | INFO     | .. there are 3 such processes running
[2025-12-13 12:55:19] 2025-12-13 17:55:13,267 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 12:55:19] 2025-12-13 17:55:13,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 12:55:19] 2025-12-13 17:55:13,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 12:55:19] 2025-12-13 17:55:14,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299375863616)>', '<ExcThread(monitor, started 140298663491328)>']
[2025-12-13 12:55:19] 2025-12-13 17:55:14,273 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 12:55:19] 2025-12-13 17:55:14,273 | INFO     | [monitor] control thread has ended
[2025-12-13 12:55:19] 2025-12-13 17:55:19,043 | INFO     | all workflow threads have been joined
[2025-12-13 12:55:19] 2025-12-13 17:55:19,043 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 12:55:19] 2025-12-13 17:55:19,043 | INFO     | traces error code: 0
[2025-12-13 12:55:19] 2025-12-13 17:55:19,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 12:55:19] 2025-12-13 17:55:19,178 [wrapper] ==== pilot stdout END ====
[2025-12-13 12:55:19] 2025-12-13 17:55:19,180 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 12:55:19] 2025-12-13 17:55:19,187 [wrapper] pilotpid: 22306
[2025-12-13 12:55:19] 2025-12-13 17:55:19,190 [wrapper] Pilot exit status: 0
[2025-12-13 12:55:19] 2025-12-13 17:55:19,200 [wrapper] pandaids: 6929263793
[2025-12-13 12:55:19] 2025-12-13 17:55:19,239 [wrapper] cleanup supervisor_pilot 18464 22307
[2025-12-13 12:55:19] 2025-12-13 17:55:19,242 [wrapper] Test setup, not cleaning
[2025-12-13 12:55:19] 2025-12-13 17:55:19,244 [wrapper] apfmon messages muted
[2025-12-13 12:55:19] 2025-12-13 17:55:19,246 [wrapper] ==== wrapper stdout END ====
[2025-12-13 12:55:19] 2025-12-13 17:55:19,249 [wrapper] ==== wrapper stderr END ====
[2025-12-13 12:55:19]  *** Error codes and diagnostics ***
[2025-12-13 12:55:19]     "exeErrorCode": 0,
[2025-12-13 12:55:19]     "exeErrorDiag": "",
[2025-12-13 12:55:19]     "pilotErrorCode": 0,
[2025-12-13 12:55:19]     "pilotErrorDiag": "",
[2025-12-13 12:55:19]  *** Listing of results directory ***
[2025-12-13 12:55:19] total 452312
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 05:01 pilot3.tar.gz
[2025-12-13 12:55:19] -rwx------ 1 boincer umatlas     36322 Dec 13 05:05 runpilot2-wrapper.sh
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 05:07 queuedata.json
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas       100 Dec 13 08:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 12:55:19] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 08:42 run_atlas
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas       105 Dec 13 08:42 job.xml
[2025-12-13 12:55:19] -rw-r--r-- 2 boincer umatlas 227382447 Dec 13 08:42 EVNT.47898761._000095.pool.root.1
[2025-12-13 12:55:19] drwxrwx--x 2 boincer umatlas      4096 Dec 13 08:42 shared
[2025-12-13 12:55:19] -rw-r--r-- 2 boincer umatlas    592388 Dec 13 08:42 input.tar.gz
[2025-12-13 12:55:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 08:42 start_atlas.sh
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas         0 Dec 13 08:42 boinc_lockfile
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas      2504 Dec 13 08:42 pandaJob.out
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas        57 Dec 13 08:42 setup.sh.local
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas    991736 Dec 13 08:42 agis_schedconf.cvmfs.json
[2025-12-13 12:55:19] drwx------ 5 boincer umatlas      4096 Dec 13 08:42 pilot3
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas      5954 Dec 13 12:49 init_data.xml
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas 226699964 Dec 13 12:53 HITS.47898763._001738.pool.root.1
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas       531 Dec 13 12:54 boinc_task_state.xml
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas      1053 Dec 13 12:54 memory_monitor_summary.json
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas   1516240 Dec 13 12:54 agis_ddmendpoints.agis.ALL.json
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas    476927 Dec 13 12:54 log.47898763._001738.job.log.tgz.1
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas      7865 Dec 13 12:54 heartbeat.json
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas        95 Dec 13 12:55 pilot_heartbeat.json
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 12:55 boinc_mmap_file
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas        29 Dec 13 12:55 wrapper_checkpoint.txt
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas      4821 Dec 13 12:55 pilotlog.txt
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas   2107644 Dec 13 12:55 log.47898763._001738.job.log.1
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas       357 Dec 13 12:55 output.list
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas       620 Dec 13 12:55 runtime_log
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas   2600960 Dec 13 12:55 result.tar.gz
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas      9343 Dec 13 12:55 runtime_log.err
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas       662 Dec 13 12:55 ePVMDmigbo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmztOKDmTopEln.diag
[2025-12-13 12:55:19] -rw-r--r-- 1 boincer umatlas     21120 Dec 13 12:55 stderr.txt
[2025-12-13 12:55:19] HITS file was successfully produced:
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas 226699964 Dec 13 12:53 shared/HITS.pool.root.1
[2025-12-13 12:55:19]  *** Contents of shared directory: ***
[2025-12-13 12:55:19] total 446584
[2025-12-13 12:55:19] -rw-r--r-- 2 boincer umatlas 227382447 Dec 13 08:42 ATLAS.root_0
[2025-12-13 12:55:19] -rw-r--r-- 2 boincer umatlas    592388 Dec 13 08:42 input.tar.gz
[2025-12-13 12:55:19] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 08:42 start_atlas.sh
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas 226699964 Dec 13 12:53 HITS.pool.root.1
[2025-12-13 12:55:19] -rw------- 1 boincer umatlas   2600960 Dec 13 12:55 result.tar.gz
12:55:20 (18637): run_atlas exited; CPU time 115475.052184
12:55:20 (18637): called boinc_finish(0)

</stderr_txt>
]]>

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