Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:39:41 (321130): wrapper (7.7.26015): starting
05:39:41 (321130): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 05:39:41] Arguments: --nthreads 12
[2025-12-13 05:39:41] Threads: 12
[2025-12-13 05:39:41] Checking for CVMFS
[2025-12-13 05:39:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 05:39:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 05:39:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 05:39:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 05:39:45] 2.11.5.0 3306151 17763 280836 153962 3 436 37894162 45568001 11573 130560 0 55449784 99.658 59706276 20418 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-12-13 05:39:45] CVMFS is ok
[2025-12-13 05:39:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 05:39:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 05:39:45] Further information can be found at the LHC@home message board.
[2025-12-13 05:39:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 05:39:45] Checking for apptainer binary...
[2025-12-13 05:39:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 05:39:45] Running /usr/bin/apptainer --version
[2025-12-13 05:39:45] apptainer version 1.4.1-1.el9
[2025-12-13 05:39:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 05:39:46] wns0041.triumf.lcg
[2025-12-13 05:39:46] apptainer works
[2025-12-13 05:39:46] Set ATHENA_PROC_NUMBER=12
[2025-12-13 05:39:46] Set ATHENA_CORE_NUMBER=12
[2025-12-13 05:39:47] Starting ATLAS job with PandaID=6929263598
[2025-12-13 05:39:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 05:46:39]  *** The last 200 lines of the pilot log: ***
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | WARNING  | wrong length of table data, x=[1765633371.0], y=[1089.0] (must be same and length>=4)
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | could have reported an average CPU frequency of 1275 MHz (4 samples)
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | ..............................
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . Timing measurements:
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . get job = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . initial setup = 4 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . payload setup = 35 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . stage-in = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . payload execution = 69 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . stage-out = 3 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . log creation = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | ..............................
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929263598/pilotlog.txt
[2025-12-13 05:46:39] 2025-12-13 13:46:03,029 | INFO     | monitor loop #92: job 0:6929263598 is in state 'failed'
[2025-12-13 05:46:39] 2025-12-13 13:46:03,030 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-12-13 05:46:39] 2025-12-13 13:46:03,072 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-12-13 05:46:39] - Log from pilotlog.txt -
[2025-12-13 05:46:39] 2025-12-13 13:46:02,993 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 05:46:39] 2025-12-13 13:46:02,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 05:46:39] 2025-12-13 13:46:02,994 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 05:46:39] 2025-12-13 13:46:02,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | WARNING  | wrong length of table data, x=[1765633371.0], y=[1089.0] (must be same and length>=4)
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | could have reported an average CPU frequency of 1275 MHz (4 samples)
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | ..............................
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . Timing measurements:
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . get job = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . initial setup = 4 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . payload setup = 35 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . stage-in = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . payload execution = 69 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . stage-out = 3 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . log creation = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | ..............................
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929263598/pilotlog.txt
[2025-12-13 05:46:39] 2025-12-13 13:46:03,029 | INFO     | monitor loop #92: job 0:6929263598 is in state 'failed'
[2025-12-13 05:46:39] 2025-12-13 13:46:03,030 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-12-13 05:46:39] 2025-12-13 13:46:03,072 | WARNING  | 
[2025-12-13 05:46:39] [begin log extracts]
[2025-12-13 05:46:39] - Log from pilotlog.txt -
[2025-12-13 05:46:39] 2025-12-13 13:46:02,993 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 05:46:39] 2025-12-13 13:46:02,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 05:46:39] 2025-12-13 13:46:02,994 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 05:46:39] 2025-12-13 13:46:02,994 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | WARNING  | wrong length of table data, x=[1765633371.0], y=[1089.0] (must be same and length>=4)
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | could have reported an average CPU frequency of 1275 MHz (4 samples)
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | ..............................
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . Timing measurements:
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . get job = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . initial setup = 4 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . payload setup = 35 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,995 | INFO     | . stage-in = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . payload execution = 69 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . stage-out = 3 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | . log creation = 0 s
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | ..............................
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-12-13 05:46:39] 2025-12-13 13:46:02,996 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6929263598/pilotlog.txt
[2025-12-13 05:46:39] 2025-12-13 13:46:03,029 | INFO     | monitor loop #92: job 0:6929263598 is in state 'failed'
[2025-12-13 05:46:39] 2025-12-13 13:46:03,030 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-12-13 05:46:39] [end log extracts]
[2025-12-13 05:46:39] 2025-12-13 13:46:03,073 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-12-13 05:46:39] 2025-12-13 13:46:03,074 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-12-13 05:46:39] 2025-12-13 13:46:04,051 | INFO     | time since job start (331s) is within the limit (174528.0s)
[2025-12-13 05:46:39] 2025-12-13 13:46:04,668 | INFO     | 
[2025-12-13 05:46:39] 2025-12-13 13:46:04,668 | INFO     | job summary report
[2025-12-13 05:46:39] 2025-12-13 13:46:04,668 | INFO     | --------------------------------------------------
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | PanDA job id: 6929263598
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | task id: 47898763
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-12-13 05:43:18,853 CRITICAL Transform executor raised TransformValidationExceptio
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | pilot state: failed 
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | transexitcode: 65
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | exeerrorcode: 65
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 05:46:39] 2025-12-13 13:46:04,669 | INFO     | exitcode: 65
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | cpuconsumptiontime: 33 s
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | nevents: 0
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | neventsw: 0
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | pid: 332136
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | pgrp: 332136
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | corecount: 12
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | event service: False
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | sizes: {0: 2283123, 1: 2283805, 2: 2283805, 3: 2284032, 15: 2284032, 26: 2284060, 27: 2284478, 37: 2284506, 109: 2307750, 110: 2307754, 114: 2312074, 115: 2312382,
[2025-12-13 05:46:39] 2025-12-13 13:46:04,670 | INFO     | --------------------------------------------------
[2025-12-13 05:46:39] 2025-12-13 13:46:04,671 | INFO     | 
[2025-12-13 05:46:39] 2025-12-13 13:46:04,671 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-12-13 05:46:39] 2025-12-13 13:46:04,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,798 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,798 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,798 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,800 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,800 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,800 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 05:46:39] 2025-12-13 13:46:04,800 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,800 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 05:46:39] 2025-12-13 13:46:04,800 | INFO     | job 6929263598 has completed (purged errors)
[2025-12-13 05:46:39] 2025-12-13 13:46:04,801 | INFO     | overall cleanup function is called
[2025-12-13 05:46:39] 2025-12-13 13:46:05,820 | INFO     | --- collectZombieJob: --- 10, [332136]
[2025-12-13 05:46:39] 2025-12-13 13:46:05,820 | INFO     | zombie collector waiting for pid 332136
[2025-12-13 05:46:39] 2025-12-13 13:46:05,820 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 05:46:39] 2025-12-13 13:46:05,821 | INFO     | collected zombie processes
[2025-12-13 05:46:39] 2025-12-13 13:46:05,821 | INFO     | will attempt to kill all subprocesses of pid=332136
[2025-12-13 05:46:39] 2025-12-13 13:46:07,470 | INFO     | process IDs to be killed: [332136] (in reverse order)
[2025-12-13 05:46:39] 2025-12-13 13:46:07,981 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 05:46:39] 2025-12-13 13:46:07,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 05:46:39] 2025-12-13 13:46:08,030 | INFO     | did not find any defunct processes belonging to 332136
[2025-12-13 05:46:39] 2025-12-13 13:46:08,069 | INFO     | did not find any defunct processes belonging to 332136
[2025-12-13 05:46:39] 2025-12-13 13:46:08,069 | INFO     | ready for new job
[2025-12-13 05:46:39] 2025-12-13 13:46:08,070 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 05:46:39] 2025-12-13 13:46:08,072 | INFO     | ***************************************
[2025-12-13 05:46:39] 2025-12-13 13:46:08,072 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 05:46:39] 2025-12-13 13:46:08,072 | INFO     | ***************************************
[2025-12-13 05:46:39] 2025-12-13 13:46:08,072 | INFO     | 
[2025-12-13 05:46:39] 2025-12-13 13:46:08,076 | INFO     | architecture information:
[2025-12-13 05:46:39] 2025-12-13 13:46:08,076 | INFO     | executing command: cat /etc/os-release
[2025-12-13 05:46:39] 2025-12-13 13:46:08,097 | INFO     | cat /etc/os-release:
[2025-12-13 05:46:39] NAME="CentOS Linux"
[2025-12-13 05:46:39] VERSION="7 (Core)"
[2025-12-13 05:46:39] ID="centos"
[2025-12-13 05:46:39] ID_LIKE="rhel fedora"
[2025-12-13 05:46:39] VERSION_ID="7"
[2025-12-13 05:46:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 05:46:39] ANSI_COLOR="0;31"
[2025-12-13 05:46:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 05:46:39] HOME_URL="https://www.centos.org/"
[2025-12-13 05:46:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 05:46:39] 
[2025-12-13 05:46:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 05:46:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 05:46:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 05:46:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 05:46:39] 
[2025-12-13 05:46:39] 2025-12-13 13:46:08,098 | INFO     | ***************************************
[2025-12-13 05:46:39] 2025-12-13 13:46:08,602 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-12-13 05:46:39] 2025-12-13 13:46:08,668 | INFO     | sufficient remaining disk space (2065690525696 B)
[2025-12-13 05:46:39] 2025-12-13 13:46:08,668 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 05:46:39] 2025-12-13 13:46:08,668 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 05:46:39] 2025-12-13 13:46:08,669 | INFO     | update_server=False
[2025-12-13 05:46:39] 2025-12-13 13:46:08,669 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 05:46:39] 2025-12-13 13:46:09,087 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 05:46:39] 2025-12-13 13:46:09,087 | INFO     | aborting loop
[2025-12-13 05:46:39] 2025-12-13 13:46:09,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 05:46:39] 2025-12-13 13:46:09,356 | INFO     | all data control threads have been joined
[2025-12-13 05:46:39] 2025-12-13 13:46:09,675 | INFO     | [job] retrieve thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:09,722 | INFO     | [job] validate thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:09,740 | INFO     | all payload control threads have been joined
[2025-12-13 05:46:39] 2025-12-13 13:46:09,824 | INFO     | [payload] failed_post thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 05:46:39] 2025-12-13 13:46:10,093 | INFO     | [job] job monitor thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,150 | INFO     | [data] copytool_in thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,218 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,227 | INFO     | [job] queue monitor thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,261 | INFO     | all job control threads have been joined
[2025-12-13 05:46:39] 2025-12-13 13:46:10,362 | INFO     | [data] control thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,411 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,527 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,528 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,746 | INFO     | [payload] control thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:10,932 | INFO     | [payload] validate_post thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:11,278 | INFO     | [job] control thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:12,010 | INFO     | [data] copytool_out thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:12,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 05:46:39] 2025-12-13 13:46:16,132 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 05:46:39] 2025-12-13 13:46:32,741 | INFO     | [monitor] cgroup control has ended
[2025-12-13 05:46:39] 2025-12-13 13:46:33,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140595688507200)>', '<ExcThread(monitor, started 140595376924416)>']
[2025-12-13 05:46:39] 2025-12-13 13:46:38,203 | INFO     | all workflow threads have been joined
[2025-12-13 05:46:39] 2025-12-13 13:46:38,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 05:46:39] 2025-12-13 13:46:38,204 | INFO     | traces error code: 0
[2025-12-13 05:46:39] 2025-12-13 13:46:38,204 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 05:46:39] 2025-12-13 13:46:38,897 | INFO     | PID=325143 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 05:46:39] 2025-12-13 13:46:38,898 | INFO     | .. there are 35 such processes running
[2025-12-13 05:46:39] 2025-12-13 13:46:38,899 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 05:46:39] 2025-12-13 13:46:38,899 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 05:46:39] 2025-12-13 13:46:38,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 05:46:39] 2025-12-13 13:46:38,899 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 05:46:39] 2025-12-13 13:46:38,899 | INFO     | [monitor] control thread has ended
[2025-12-13 05:46:39] 2025-12-13 13:46:39,121 [wrapper] ==== pilot stdout END ====
[2025-12-13 05:46:39] 2025-12-13 13:46:39,124 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 05:46:39] 2025-12-13 13:46:39,128 [wrapper] pilotpid: 325143
[2025-12-13 05:46:39] 2025-12-13 13:46:39,131 [wrapper] Pilot exit status: 0
[2025-12-13 05:46:39] 2025-12-13 13:46:39,148 [wrapper] pandaids: 6929263598
[2025-12-13 05:46:39] 2025-12-13 13:46:39,244 [wrapper] cleanup supervisor_pilot  325149 325144
[2025-12-13 05:46:39] 2025-12-13 13:46:39,248 [wrapper] Test setup, not cleaning
[2025-12-13 05:46:39] 2025-12-13 13:46:39,251 [wrapper] apfmon messages muted
[2025-12-13 05:46:39] 2025-12-13 13:46:39,255 [wrapper] ==== wrapper stdout END ====
[2025-12-13 05:46:39] 2025-12-13 13:46:39,258 [wrapper] ==== wrapper stderr END ====
[2025-12-13 05:46:39]  *** Error codes and diagnostics ***
[2025-12-13 05:46:39]     "exeErrorCode": 65,
[2025-12-13 05:46:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 05:46:39]     "pilotErrorCode": 1305,
[2025-12-13 05:46:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-12-13 05:46:39]  *** Listing of results directory ***
[2025-12-13 05:46:39] total 221852
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc    579449 Dec 13 02:01 pilot3.tar.gz
[2025-12-13 05:46:39] -rwx------. 1 boinc boinc     36322 Dec 13 02:05 runpilot2-wrapper.sh
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc      5112 Dec 13 02:07 queuedata.json
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc       100 Dec 13 05:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 05:46:39] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 05:39 run_atlas
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc       105 Dec 13 05:39 job.xml
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc      6596 Dec 13 05:39 init_data.xml
[2025-12-13 05:46:39] -rw-r--r--. 2 boinc boinc 223021493 Dec 13 05:39 EVNT.47898761._000087.pool.root.1
[2025-12-13 05:46:39] -rw-r--r--. 2 boinc boinc     15847 Dec 13 05:39 start_atlas.sh
[2025-12-13 05:46:39] drwxrwx--x. 2 boinc boinc      4096 Dec 13 05:39 shared
[2025-12-13 05:46:39] -rw-r--r--. 2 boinc boinc    592394 Dec 13 05:39 input.tar.gz
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc         0 Dec 13 05:39 boinc_lockfile
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc      2504 Dec 13 05:39 pandaJob.out
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc    991736 Dec 13 05:40 agis_schedconf.cvmfs.json
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc   1516240 Dec 13 05:40 agis_ddmendpoints.agis.ALL.json
[2025-12-13 05:46:39] drwx------. 5 boinc boinc      4096 Dec 13 05:40 pilot3
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc       524 Dec 13 05:43 boinc_task_state.xml
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc       960 Dec 13 05:43 memory_monitor_summary.json
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc     21661 Dec 13 05:43 log.47898763._001543.job.log.tgz.1
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc      8384 Dec 13 05:46 heartbeat.json
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc      8192 Dec 13 05:46 boinc_mmap_file
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc        23 Dec 13 05:46 wrapper_checkpoint.txt
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc        95 Dec 13 05:46 pilot_heartbeat.json
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc       822 Dec 13 05:46 pilotlog.txt
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc     98002 Dec 13 05:46 log.47898763._001543.job.log.1
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc       188 Dec 13 05:46 output.list
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc       620 Dec 13 05:46 runtime_log
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc    143360 Dec 13 05:46 result.tar.gz
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc       643 Dec 13 05:46 SwjMDmYgbo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmsOKDmCbcCAn.diag
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc      8636 Dec 13 05:46 runtime_log.err
[2025-12-13 05:46:39] -rw-r--r--. 1 boinc boinc     21891 Dec 13 05:46 stderr.txt
[2025-12-13 05:46:39] No HITS result produced
[2025-12-13 05:46:39]  *** Contents of shared directory: ***
[2025-12-13 05:46:39] total 218536
[2025-12-13 05:46:39] -rw-r--r--. 2 boinc boinc 223021493 Dec 13 05:39 ATLAS.root_0
[2025-12-13 05:46:39] -rw-r--r--. 2 boinc boinc     15847 Dec 13 05:39 start_atlas.sh
[2025-12-13 05:46:39] -rw-r--r--. 2 boinc boinc    592394 Dec 13 05:39 input.tar.gz
[2025-12-13 05:46:39] -rw-------. 1 boinc boinc    143360 Dec 13 05:46 result.tar.gz
05:46:40 (321130): run_atlas exited; CPU time 46.393776
05:46:40 (321130): called boinc_finish(0)

</stderr_txt>
]]>

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