Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:14:43 (5016): wrapper (7.7.26015): starting
08:14:43 (5016): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 08:14:43] Arguments: --nthreads 12
[2025-12-13 08:14:43] Threads: 12
[2025-12-13 08:14:43] Checking for CVMFS
[2025-12-13 08:14:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 08:14:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 08:14:43] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 08:14:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 08:14:44] 2.11.2.0 2998 127921 98864 153961 0 57 13009259 20275201 1 130560 0 52659637 99.954 5687667 35289 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 08:14:44] CVMFS is ok
[2025-12-13 08:14:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 08:14:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 08:14:44] Further information can be found at the LHC@home message board.
[2025-12-13 08:14:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 08:14:44] Checking for apptainer binary...
[2025-12-13 08:14:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 08:14:44] Running /usr/bin/apptainer --version
[2025-12-13 08:14:44] apptainer version 1.3.2-1.el7
[2025-12-13 08:14:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 08:14:45] c-205-12.aglt2.org
[2025-12-13 08:14:45] apptainer works
[2025-12-13 08:14:45] Set ATHENA_PROC_NUMBER=12
[2025-12-13 08:14:45] Set ATHENA_CORE_NUMBER=12
[2025-12-13 08:14:45] Starting ATLAS job with PandaID=6929275782
[2025-12-13 08:14:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 09:53:20]  *** The last 200 lines of the pilot log: ***
[2025-12-13 09:53:20]  status_code=0
[2025-12-13 09:53:20]  storage_token=
[2025-12-13 09:53:20]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929275782/log.47898836._000930.job.log.tgz.1
[2025-12-13 09:53:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/fd/log.47898836._000930.job.log.tgz.1
[2025-12-13 09:53:20]  workdir=None
[2025-12-13 09:53:20] ]
[2025-12-13 09:53:20] 2025-12-13 14:52:38,447 | INFO     | transferring file log.47898836._000930.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929275782/log.47898836._000930.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 09:53:20] 2025-12-13 14:52:38,447 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929275782/log.47898836._000930.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898836._000930.job
[2025-12-13 09:53:20] 2025-12-13 14:52:38,470 | INFO     | adding to output.list: log.47898836._000930.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/fd/log.47898836._000930.job.log.tg
[2025-12-13 09:53:20] 2025-12-13 14:52:38,471 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 09:53:20] 2025-12-13 14:52:38,471 | INFO     | summary of transferred files:
[2025-12-13 09:53:20] 2025-12-13 14:52:38,471 | INFO     |  -- lfn=log.47898836._000930.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 09:53:20] 2025-12-13 14:52:38,471 | INFO     | stage-out finished correctly
[2025-12-13 09:53:20] 2025-12-13 14:52:39,005 | INFO     | time since job start (5859s) is within the limit (174528.0s)
[2025-12-13 09:53:20] 2025-12-13 14:52:39,950 | INFO     | monitor loop #434: job 0:6929275782 is in state 'finished'
[2025-12-13 09:53:20] 2025-12-13 14:52:39,950 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:53:20] 2025-12-13 14:52:41,011 | INFO     | time since job start (5861s) is within the limit (174528.0s)
[2025-12-13 09:53:20] 2025-12-13 14:52:41,463 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 09:53:20] 2025-12-13 14:52:42,453 | INFO     | monitor loop #435: job 0:6929275782 is in state 'finished'
[2025-12-13 09:53:20] 2025-12-13 14:52:42,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:53:20] 2025-12-13 14:52:43,016 | INFO     | time since job start (5863s) is within the limit (174528.0s)
[2025-12-13 09:53:20] 2025-12-13 14:52:43,185 | INFO     | job 6929275782 has state=finished
[2025-12-13 09:53:20] 2025-12-13 14:52:43,185 | INFO     | preparing for final server update for job 6929275782 in state='finished'
[2025-12-13 09:53:20] 2025-12-13 14:52:43,185 | INFO     | this job has now completed (state=finished)
[2025-12-13 09:53:20] 2025-12-13 14:52:43,186 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 09:53:20] 2025-12-13 14:52:43,186 | INFO     | log transfer has been attempted: DONE
[2025-12-13 09:53:20] 2025-12-13 14:52:43,186 | INFO     | job 6929275782 has finished - writing final server update
[2025-12-13 09:53:20] 2025-12-13 14:52:43,186 | INFO     | total number of processed events: 400 (read)
[2025-12-13 09:53:20] 2025-12-13 14:52:43,187 | INFO     | executing command: lscpu
[2025-12-13 09:53:20] 2025-12-13 14:52:43,213 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 09:53:20] 2025-12-13 14:52:44,957 | INFO     | monitor loop #436: job 0:6929275782 is in state 'finished'
[2025-12-13 09:53:20] 2025-12-13 14:52:44,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:53:20] 2025-12-13 14:52:45,022 | INFO     | time since job start (5865s) is within the limit (174528.0s)
[2025-12-13 09:53:20] 2025-12-13 14:52:46,142 | INFO     | PID=8696 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 09:53:20] 2025-12-13 14:52:47,143 | INFO     | time since job start (5867s) is within the limit (174528.0s)
[2025-12-13 09:53:20] 2025-12-13 14:52:47,460 | INFO     | monitor loop #437: job 0:6929275782 is in state 'finished'
[2025-12-13 09:53:20] 2025-12-13 14:52:47,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:53:20] 2025-12-13 14:52:47,999 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 09:53:20] 2025-12-13 14:52:48,002 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-12-13 09:53:20] 2025-12-13 14:52:48,003 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929275782/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 09:53:20] 2025-12-13 14:52:48,004 | INFO     | extracted standard info from prmon json
[2025-12-13 09:53:20] 2025-12-13 14:52:48,004 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 09:53:20] 2025-12-13 14:52:48,004 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 09:53:20] 2025-12-13 14:52:48,004 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 09:53:20] 2025-12-13 14:52:48,005 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 09:53:20] 2025-12-13 14:52:48,006 | INFO     | fitting pss+swap vs Time
[2025-12-13 09:53:20] 2025-12-13 14:52:48,007 | INFO     | sum of square deviations: 218571540.0
[2025-12-13 09:53:20] 2025-12-13 14:52:48,007 | INFO     | sum of deviations: -12289234337.99999
[2025-12-13 09:53:20] 2025-12-13 14:52:48,007 | INFO     | mean x: 1765634719.0
[2025-12-13 09:53:20] 2025-12-13 14:52:48,007 | INFO     | mean y: 2849857.853932584
[2025-12-13 09:53:20] 2025-12-13 14:52:48,007 | INFO     | intersect: 99276061809.8755
[2025-12-13 09:53:20] 2025-12-13 14:52:48,008 | INFO     | chi2: 0.15833559266725
[2025-12-13 09:53:20] 2025-12-13 14:52:48,008 | INFO     | current memory leak: -56.23 B/s (using 89 data points, chi2=0.16)
[2025-12-13 09:53:20] 2025-12-13 14:52:48,008 | INFO     | could have reported an average CPU frequency of 2131 MHz (7 samples)
[2025-12-13 09:53:20] 2025-12-13 14:52:48,008 | INFO     | ..............................
[2025-12-13 09:53:20] 2025-12-13 14:52:48,008 | INFO     | . Timing measurements:
[2025-12-13 09:53:20] 2025-12-13 14:52:48,008 | INFO     | . get job = 0 s
[2025-12-13 09:53:20] 2025-12-13 14:52:48,008 | INFO     | . initial setup = 2 s
[2025-12-13 09:53:20] 2025-12-13 14:52:48,009 | INFO     | . payload setup = 7 s
[2025-12-13 09:53:20] 2025-12-13 14:52:48,009 | INFO     | . stage-in = 0 s
[2025-12-13 09:53:20] 2025-12-13 14:52:48,009 | INFO     | . payload execution = 5829 s
[2025-12-13 09:53:20] 2025-12-13 14:52:48,009 | INFO     | . stage-out = 0 s
[2025-12-13 09:53:20] 2025-12-13 14:52:48,009 | INFO     | . log creation = 0 s
[2025-12-13 09:53:20] 2025-12-13 14:52:48,009 | INFO     | ..............................
[2025-12-13 09:53:20] 2025-12-13 14:52:48,357 | INFO     | 
[2025-12-13 09:53:20] 2025-12-13 14:52:48,358 | INFO     | job summary report
[2025-12-13 09:53:20] 2025-12-13 14:52:48,358 | INFO     | --------------------------------------------------
[2025-12-13 09:53:20] 2025-12-13 14:52:48,358 | INFO     | PanDA job id: 6929275782
[2025-12-13 09:53:20] 2025-12-13 14:52:48,358 | INFO     | task id: 47898836
[2025-12-13 09:53:20] 2025-12-13 14:52:48,358 | INFO     | errors: (none)
[2025-12-13 09:53:20] 2025-12-13 14:52:48,358 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 09:53:20] 2025-12-13 14:52:48,359 | INFO     | pilot state: finished 
[2025-12-13 09:53:20] 2025-12-13 14:52:48,359 | INFO     | transexitcode: 0
[2025-12-13 09:53:20] 2025-12-13 14:52:48,359 | INFO     | exeerrorcode: 0
[2025-12-13 09:53:20] 2025-12-13 14:52:48,359 | INFO     | exeerrordiag: 
[2025-12-13 09:53:20] 2025-12-13 14:52:48,359 | INFO     | exitcode: 0
[2025-12-13 09:53:20] 2025-12-13 14:52:48,359 | INFO     | exitmsg: OK
[2025-12-13 09:53:20] 2025-12-13 14:52:48,360 | INFO     | cpuconsumptiontime: 63048 s
[2025-12-13 09:53:20] 2025-12-13 14:52:48,360 | INFO     | nevents: 400
[2025-12-13 09:53:20] 2025-12-13 14:52:48,360 | INFO     | neventsw: 0
[2025-12-13 09:53:20] 2025-12-13 14:52:48,360 | INFO     | pid: 15237
[2025-12-13 09:53:20] 2025-12-13 14:52:48,360 | INFO     | pgrp: 15237
[2025-12-13 09:53:20] 2025-12-13 14:52:48,360 | INFO     | corecount: 12
[2025-12-13 09:53:20] 2025-12-13 14:52:48,361 | INFO     | event service: False
[2025-12-13 09:53:20] 2025-12-13 14:52:48,361 | INFO     | sizes: {0: 2284001, 1: 2284029, 5: 2284291, 11: 2284347, 5840: 2311014, 5842: 2320012, 5845: 2320196, 5851: 2320390}
[2025-12-13 09:53:20] 2025-12-13 14:52:48,361 | INFO     | --------------------------------------------------
[2025-12-13 09:53:20] 2025-12-13 14:52:48,361 | INFO     | 
[2025-12-13 09:53:20] 2025-12-13 14:52:48,361 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 09:53:20] 2025-12-13 14:52:48,384 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,384 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,387 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 09:53:20] 2025-12-13 14:52:48,387 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,387 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 09:53:20] 2025-12-13 14:52:48,388 | INFO     | job 6929275782 has completed (purged errors)
[2025-12-13 09:53:20] 2025-12-13 14:52:48,388 | INFO     | overall cleanup function is called
[2025-12-13 09:53:20] 2025-12-13 14:52:49,396 | INFO     | --- collectZombieJob: --- 10, [15237]
[2025-12-13 09:53:20] 2025-12-13 14:52:49,396 | INFO     | zombie collector waiting for pid 15237
[2025-12-13 09:53:20] 2025-12-13 14:52:49,396 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 09:53:20] 2025-12-13 14:52:49,397 | INFO     | collected zombie processes
[2025-12-13 09:53:20] 2025-12-13 14:52:49,397 | INFO     | will attempt to kill all subprocesses of pid=15237
[2025-12-13 09:53:20] 2025-12-13 14:52:49,486 | INFO     | process IDs to be killed: [15237] (in reverse order)
[2025-12-13 09:53:20] 2025-12-13 14:52:49,535 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 09:53:20] 2025-12-13 14:52:49,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 09:53:20] 2025-12-13 14:52:49,540 | INFO     | did not find any defunct processes belonging to 15237
[2025-12-13 09:53:20] 2025-12-13 14:52:49,542 | INFO     | did not find any defunct processes belonging to 15237
[2025-12-13 09:53:20] 2025-12-13 14:52:49,542 | INFO     | ready for new job
[2025-12-13 09:53:20] 2025-12-13 14:52:49,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 09:53:20] 2025-12-13 14:52:49,544 | INFO     | ***************************************
[2025-12-13 09:53:20] 2025-12-13 14:52:49,544 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 09:53:20] 2025-12-13 14:52:49,544 | INFO     | ***************************************
[2025-12-13 09:53:20] 2025-12-13 14:52:49,544 | INFO     | 
[2025-12-13 09:53:20] 2025-12-13 14:52:49,545 | INFO     | architecture information:
[2025-12-13 09:53:20] 2025-12-13 14:52:49,545 | INFO     | executing command: cat /etc/os-release
[2025-12-13 09:53:20] 2025-12-13 14:52:49,560 | INFO     | cat /etc/os-release:
[2025-12-13 09:53:20] NAME="CentOS Linux"
[2025-12-13 09:53:20] VERSION="7 (Core)"
[2025-12-13 09:53:20] ID="centos"
[2025-12-13 09:53:20] ID_LIKE="rhel fedora"
[2025-12-13 09:53:20] VERSION_ID="7"
[2025-12-13 09:53:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 09:53:20] ANSI_COLOR="0;31"
[2025-12-13 09:53:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 09:53:20] HOME_URL="https://www.centos.org/"
[2025-12-13 09:53:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 09:53:20] 
[2025-12-13 09:53:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 09:53:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 09:53:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 09:53:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 09:53:20] 
[2025-12-13 09:53:20] 2025-12-13 14:52:49,560 | INFO     | ***************************************
[2025-12-13 09:53:20] 2025-12-13 14:52:50,063 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 09:53:20] 2025-12-13 14:52:50,079 | INFO     | sufficient remaining disk space (29360128000 B)
[2025-12-13 09:53:20] 2025-12-13 14:52:50,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 09:53:20] 2025-12-13 14:52:50,080 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 09:53:20] 2025-12-13 14:52:50,080 | INFO     | update_server=False
[2025-12-13 09:53:20] 2025-12-13 14:52:50,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 09:53:20] 2025-12-13 14:52:50,081 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:53:20] 2025-12-13 14:52:50,399 | INFO     | all payload control threads have been joined
[2025-12-13 09:53:20] 2025-12-13 14:52:50,744 | INFO     | all data control threads have been joined
[2025-12-13 09:53:20] 2025-12-13 14:52:50,968 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:53:20] 2025-12-13 14:52:50,968 | INFO     | aborting loop
[2025-12-13 09:53:20] 2025-12-13 14:52:51,086 | INFO     | [job] retrieve thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,086 | INFO     | [job] queue monitor thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,103 | INFO     | all job control threads have been joined
[2025-12-13 09:53:20] 2025-12-13 14:52:51,106 | INFO     | [payload] validate_post thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,242 | INFO     | [payload] failed_post thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,361 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,400 | INFO     | [payload] control thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 09:53:20] 2025-12-13 14:52:51,631 | INFO     | [data] copytool_in thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,734 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,749 | INFO     | [data] control thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:51,969 | INFO     | [job] job monitor thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:52,050 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 09:53:20] 2025-12-13 14:52:52,109 | INFO     | [job] control thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:52,233 | INFO     | [job] validate thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:52,256 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:53,576 | INFO     | [data] copytool_out thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:52:56,056 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:53:00,456 | INFO     | job.realtimelogging is not enabled
[2025-12-13 09:53:20] 2025-12-13 14:53:01,461 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 09:53:20] 2025-12-13 14:53:09,574 | INFO     | [monitor] cgroup control has ended
[2025-12-13 09:53:20] 2025-12-13 14:53:11,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918664845120)>', '<ExcThread(monitor, started 139917921335040)>']
[2025-12-13 09:53:20] 2025-12-13 14:53:16,462 | INFO     | all workflow threads have been joined
[2025-12-13 09:53:20] 2025-12-13 14:53:16,462 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 09:53:20] 2025-12-13 14:53:16,462 | INFO     | traces error code: 0
[2025-12-13 09:53:20] 2025-12-13 14:53:16,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 09:53:20] 2025-12-13 14:53:20,356 | INFO     | PID=8696 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 09:53:20] 2025-12-13 14:53:20,358 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 09:53:20] 2025-12-13 14:53:20,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 09:53:20] 2025-12-13 14:53:20,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 09:53:20] 2025-12-13 14:53:20,358 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 09:53:20] 2025-12-13 14:53:20,358 | CRITICAL | thread 'MainThread' is not alive
[2025-12-13 09:53:20] 2025-12-13 14:53:20,359 | INFO     | [monitor] control thread has ended
[2025-12-13 09:53:20] 2025-12-13 14:53:20,461 [wrapper] ==== pilot stdout END ====
[2025-12-13 09:53:20] 2025-12-13 14:53:20,465 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 09:53:20] 2025-12-13 14:53:20,468 [wrapper] pilotpid: 8696
[2025-12-13 09:53:20] 2025-12-13 14:53:20,472 [wrapper] Pilot exit status: 0
[2025-12-13 09:53:20] 2025-12-13 14:53:20,487 [wrapper] pandaids: 6929275782
[2025-12-13 09:53:20] 2025-12-13 14:53:20,527 [wrapper] cleanup supervisor_pilot 17076 8697
[2025-12-13 09:53:20] 2025-12-13 14:53:20,532 [wrapper] Test setup, not cleaning
[2025-12-13 09:53:20] 2025-12-13 14:53:20,535 [wrapper] apfmon messages muted
[2025-12-13 09:53:20] 2025-12-13 14:53:20,539 [wrapper] ==== wrapper stdout END ====
[2025-12-13 09:53:20] 2025-12-13 14:53:20,543 [wrapper] ==== wrapper stderr END ====
[2025-12-13 09:53:20]  *** Error codes and diagnostics ***
[2025-12-13 09:53:20]     "exeErrorCode": 0,
[2025-12-13 09:53:20]     "exeErrorDiag": "",
[2025-12-13 09:53:20]     "pilotErrorCode": 0,
[2025-12-13 09:53:20]     "pilotErrorDiag": "",
[2025-12-13 09:53:20]  *** Listing of results directory ***
[2025-12-13 09:53:20] total 408536
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 05:01 pilot3.tar.gz
[2025-12-13 09:53:20] -rwx------ 1 boincer umatlas     36322 Dec 13 05:03 runpilot2-wrapper.sh
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 05:05 queuedata.json
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas       100 Dec 13 08:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 09:53:20] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 08:14 run_atlas
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas       105 Dec 13 08:14 job.xml
[2025-12-13 09:53:20] -rw-r--r-- 2 boincer umatlas 214889928 Dec 13 08:14 EVNT.47898833._000038.pool.root.1
[2025-12-13 09:53:20] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 08:14 start_atlas.sh
[2025-12-13 09:53:20] drwxrwx--x 2 boincer umatlas      4096 Dec 13 08:14 shared
[2025-12-13 09:53:20] -rw-r--r-- 2 boincer umatlas    592403 Dec 13 08:14 input.tar.gz
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas         0 Dec 13 08:14 boinc_lockfile
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas      2546 Dec 13 08:14 pandaJob.out
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas        57 Dec 13 08:14 setup.sh.local
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas    991736 Dec 13 08:14 agis_schedconf.cvmfs.json
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas   1516240 Dec 13 08:14 agis_ddmendpoints.agis.ALL.json
[2025-12-13 09:53:20] drwx------ 5 boincer umatlas      4096 Dec 13 08:15 pilot3
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 09:49 init_data.xml
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas 197078568 Dec 13 09:52 HITS.47898836._000930.pool.root.1
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas       529 Dec 13 09:52 boinc_task_state.xml
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas      1047 Dec 13 09:52 memory_monitor_summary.json
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas    393625 Dec 13 09:52 log.47898836._000930.job.log.tgz.1
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas      7842 Dec 13 09:52 heartbeat.json
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas        27 Dec 13 09:53 wrapper_checkpoint.txt
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 09:53 boinc_mmap_file
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas        95 Dec 13 09:53 pilot_heartbeat.json
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas       814 Dec 13 09:53 pilotlog.txt
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas    835259 Dec 13 09:53 log.47898836._000930.job.log.1
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas       357 Dec 13 09:53 output.list
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas       620 Dec 13 09:53 runtime_log
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas   1249280 Dec 13 09:53 result.tar.gz
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 09:53 runtime_log.err
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas       659 Dec 13 09:53 ELFKDmeebo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuoOKDmYBM2kn.diag
[2025-12-13 09:53:20] -rw-r--r-- 1 boincer umatlas     22217 Dec 13 09:53 stderr.txt
[2025-12-13 09:53:20] HITS file was successfully produced:
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas 197078568 Dec 13 09:52 shared/HITS.pool.root.1
[2025-12-13 09:53:20]  *** Contents of shared directory: ***
[2025-12-13 09:53:20] total 404136
[2025-12-13 09:53:20] -rw-r--r-- 2 boincer umatlas 214889928 Dec 13 08:14 ATLAS.root_0
[2025-12-13 09:53:20] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 08:14 start_atlas.sh
[2025-12-13 09:53:20] -rw-r--r-- 2 boincer umatlas    592403 Dec 13 08:14 input.tar.gz
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas 197078568 Dec 13 09:52 HITS.pool.root.1
[2025-12-13 09:53:20] -rw------- 1 boincer umatlas   1249280 Dec 13 09:53 result.tar.gz
09:53:22 (5016): run_atlas exited; CPU time 63027.107976
09:53:22 (5016): called boinc_finish(0)

</stderr_txt>
]]>

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