Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:33:50 (6197): wrapper (7.7.26015): starting
07:33:50 (6197): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 07:33:50] Arguments: --nthreads 12
[2025-12-13 07:33:50] Threads: 12
[2025-12-13 07:33:50] Checking for CVMFS
[2025-12-13 07:33:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 07:33:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 07:33:50] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 07:33:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 07:33:51] 2.11.2.0 2925 312167 95980 153961 1 57 15280594 20275201 1 130560 1 137832709 99.966 18157049 15160 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 07:33:51] CVMFS is ok
[2025-12-13 07:33:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 07:33:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 07:33:51] Further information can be found at the LHC@home message board.
[2025-12-13 07:33:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 07:33:51] Checking for apptainer binary...
[2025-12-13 07:33:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 07:33:51] Running /usr/bin/apptainer --version
[2025-12-13 07:33:51] apptainer version 1.3.2-1.el7
[2025-12-13 07:33:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 07:33:52] c-205-9.aglt2.org
[2025-12-13 07:33:52] apptainer works
[2025-12-13 07:33:52] Set ATHENA_PROC_NUMBER=12
[2025-12-13 07:33:52] Set ATHENA_CORE_NUMBER=12
[2025-12-13 07:33:52] Starting ATLAS job with PandaID=6929266031
[2025-12-13 07:33:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 09:15:33]  *** The last 200 lines of the pilot log: ***
[2025-12-13 09:15:33] 2025-12-13 14:14:54,438 | INFO     | adding to output.list: log.47898763._002333.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/49/log.47898763._002333.job.log.tg
[2025-12-13 09:15:33] 2025-12-13 14:14:54,439 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 09:15:33] 2025-12-13 14:14:54,439 | INFO     | summary of transferred files:
[2025-12-13 09:15:33] 2025-12-13 14:14:54,439 | INFO     |  -- lfn=log.47898763._002333.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 09:15:33] 2025-12-13 14:14:54,440 | INFO     | stage-out finished correctly
[2025-12-13 09:15:33] 2025-12-13 14:14:54,524 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 09:15:33] 2025-12-13 14:14:54,657 | INFO     | PID=9927 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 09:15:33] 2025-12-13 14:14:54,721 | WARNING  | process 16290 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 09:15:33] 2025-12-13 14:14:54,722 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929266031/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,722 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929266031/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,723 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-13 09:15:33] 2025-12-13 14:14:54,723 | WARNING  | maxPSS not found in memory monitor output
[2025-12-13 09:15:33] 2025-12-13 14:14:54,723 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3997052 B
[2025-12-13 09:15:33] 2025-12-13 14:14:54,723 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15837 B
[2025-12-13 09:15:33] 2025-12-13 14:14:54,724 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 09:15:33] 2025-12-13 14:14:54,742 | INFO     | sufficient remaining disk space (29307699200 B)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,743 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,744 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929266031: 4305503 B (within 2768240640 B limit)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,744 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929266031/HITS.47898763._002333.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,744 | INFO     | total size of present files: 0 B (workdir size: 4305503 B)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,744 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929266031/HITS.47898763._002333.pool.root.1 since it does not exist
[2025-12-13 09:15:33] 2025-12-13 14:14:54,835 | INFO     | number of running child processes to parent process 16290: 1
[2025-12-13 09:15:33] 2025-12-13 14:14:54,835 | INFO     | maximum number of monitored processes: 6
[2025-12-13 09:15:33] 2025-12-13 14:14:54,976 | INFO     | job 6929266031 has state=finished
[2025-12-13 09:15:33] 2025-12-13 14:14:54,976 | INFO     | preparing for final server update for job 6929266031 in state='finished'
[2025-12-13 09:15:33] 2025-12-13 14:14:54,977 | INFO     | this job has now completed (state=finished)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,977 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,977 | INFO     | log transfer has been attempted: DONE
[2025-12-13 09:15:33] 2025-12-13 14:14:54,977 | INFO     | job 6929266031 has finished - writing final server update
[2025-12-13 09:15:33] 2025-12-13 14:14:54,978 | INFO     | total number of processed events: 400 (read)
[2025-12-13 09:15:33] 2025-12-13 14:14:54,979 | INFO     | executing command: lscpu
[2025-12-13 09:15:33] 2025-12-13 14:14:55,004 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 09:15:33] 2025-12-13 14:14:55,658 | INFO     | time since job start (6048s) is within the limit (174528.0s)
[2025-12-13 09:15:33] 2025-12-13 14:14:57,338 | INFO     | monitor loop #447: job 0:6929266031 is in state 'finished'
[2025-12-13 09:15:33] 2025-12-13 14:14:57,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:15:33] 2025-12-13 14:14:57,663 | INFO     | time since job start (6050s) is within the limit (174528.0s)
[2025-12-13 09:15:33] 2025-12-13 14:14:59,668 | INFO     | time since job start (6052s) is within the limit (174528.0s)
[2025-12-13 09:15:33] 2025-12-13 14:14:59,841 | INFO     | monitor loop #448: job 0:6929266031 is in state 'finished'
[2025-12-13 09:15:33] 2025-12-13 14:14:59,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 09:15:33] 2025-12-13 14:15:01,033 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 09:15:33] 2025-12-13 14:15:01,037 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-12-13 09:15:33] 2025-12-13 14:15:01,039 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929266031/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 09:15:33] 2025-12-13 14:15:01,040 | INFO     | extracted standard info from prmon json
[2025-12-13 09:15:33] 2025-12-13 14:15:01,040 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 09:15:33] 2025-12-13 14:15:01,040 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 09:15:33] 2025-12-13 14:15:01,040 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 09:15:33] 2025-12-13 14:15:01,040 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 09:15:33] 2025-12-13 14:15:01,042 | INFO     | fitting pss+swap vs Time
[2025-12-13 09:15:33] 2025-12-13 14:15:01,043 | INFO     | sum of square deviations: 241429643.0
[2025-12-13 09:15:33] 2025-12-13 14:15:01,043 | INFO     | sum of deviations: -14805472351.5
[2025-12-13 09:15:33] 2025-12-13 14:15:01,043 | INFO     | mean x: 1765632357.5
[2025-12-13 09:15:33] 2025-12-13 14:15:01,043 | INFO     | mean y: 2786681.3804347827
[2025-12-13 09:15:33] 2025-12-13 14:15:01,043 | INFO     | intersect: 108278724660.87708
[2025-12-13 09:15:33] 2025-12-13 14:15:01,044 | INFO     | chi2: 0.07601115063922234
[2025-12-13 09:15:33] 2025-12-13 14:15:01,044 | INFO     | current memory leak: -61.32 B/s (using 92 data points, chi2=0.08)
[2025-12-13 09:15:33] 2025-12-13 14:15:01,044 | INFO     | could have reported an average CPU frequency of 2134 MHz (7 samples)
[2025-12-13 09:15:33] 2025-12-13 14:15:01,044 | INFO     | ..............................
[2025-12-13 09:15:33] 2025-12-13 14:15:01,044 | INFO     | . Timing measurements:
[2025-12-13 09:15:33] 2025-12-13 14:15:01,044 | INFO     | . get job = 0 s
[2025-12-13 09:15:33] 2025-12-13 14:15:01,045 | INFO     | . initial setup = 2 s
[2025-12-13 09:15:33] 2025-12-13 14:15:01,045 | INFO     | . payload setup = 7 s
[2025-12-13 09:15:33] 2025-12-13 14:15:01,045 | INFO     | . stage-in = 0 s
[2025-12-13 09:15:33] 2025-12-13 14:15:01,045 | INFO     | . payload execution = 6018 s
[2025-12-13 09:15:33] 2025-12-13 14:15:01,045 | INFO     | . stage-out = 0 s
[2025-12-13 09:15:33] 2025-12-13 14:15:01,045 | INFO     | . log creation = 0 s
[2025-12-13 09:15:33] 2025-12-13 14:15:01,045 | INFO     | ..............................
[2025-12-13 09:15:33] 2025-12-13 14:15:01,127 | INFO     | 
[2025-12-13 09:15:33] 2025-12-13 14:15:01,127 | INFO     | job summary report
[2025-12-13 09:15:33] 2025-12-13 14:15:01,127 | INFO     | --------------------------------------------------
[2025-12-13 09:15:33] 2025-12-13 14:15:01,127 | INFO     | PanDA job id: 6929266031
[2025-12-13 09:15:33] 2025-12-13 14:15:01,127 | INFO     | task id: 47898763
[2025-12-13 09:15:33] 2025-12-13 14:15:01,128 | INFO     | errors: (none)
[2025-12-13 09:15:33] 2025-12-13 14:15:01,128 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 09:15:33] 2025-12-13 14:15:01,128 | INFO     | pilot state: finished 
[2025-12-13 09:15:33] 2025-12-13 14:15:01,128 | INFO     | transexitcode: 0
[2025-12-13 09:15:33] 2025-12-13 14:15:01,128 | INFO     | exeerrorcode: 0
[2025-12-13 09:15:33] 2025-12-13 14:15:01,128 | INFO     | exeerrordiag: 
[2025-12-13 09:15:33] 2025-12-13 14:15:01,128 | INFO     | exitcode: 0
[2025-12-13 09:15:33] 2025-12-13 14:15:01,128 | INFO     | exitmsg: OK
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | cpuconsumptiontime: 67107 s
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | nevents: 400
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | neventsw: 0
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | pid: 16290
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | pgrp: 16290
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | corecount: 12
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | event service: False
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | sizes: {0: 2283780, 1: 2283979, 6: 2284241, 11: 2284269, 6030: 2310988, 6031: 2320170, 6037: 2320336}
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | --------------------------------------------------
[2025-12-13 09:15:33] 2025-12-13 14:15:01,129 | INFO     | 
[2025-12-13 09:15:33] 2025-12-13 14:15:01,130 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 09:15:33] 2025-12-13 14:15:01,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,152 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,152 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,152 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,152 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,152 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,152 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,153 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,153 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,153 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,153 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,153 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,153 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,154 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,154 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,154 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,154 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,154 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 09:15:33] 2025-12-13 14:15:01,154 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,155 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 09:15:33] 2025-12-13 14:15:01,155 | INFO     | job 6929266031 has completed (purged errors)
[2025-12-13 09:15:33] 2025-12-13 14:15:01,155 | INFO     | overall cleanup function is called
[2025-12-13 09:15:33] 2025-12-13 14:15:02,163 | INFO     | --- collectZombieJob: --- 10, [16290]
[2025-12-13 09:15:33] 2025-12-13 14:15:02,164 | INFO     | zombie collector waiting for pid 16290
[2025-12-13 09:15:33] 2025-12-13 14:15:02,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 09:15:33] 2025-12-13 14:15:02,164 | INFO     | collected zombie processes
[2025-12-13 09:15:33] 2025-12-13 14:15:02,164 | INFO     | will attempt to kill all subprocesses of pid=16290
[2025-12-13 09:15:33] 2025-12-13 14:15:02,257 | INFO     | process IDs to be killed: [16290] (in reverse order)
[2025-12-13 09:15:33] 2025-12-13 14:15:02,309 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 09:15:33] 2025-12-13 14:15:02,309 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 09:15:33] 2025-12-13 14:15:02,312 | INFO     | did not find any defunct processes belonging to 16290
[2025-12-13 09:15:33] 2025-12-13 14:15:02,315 | INFO     | did not find any defunct processes belonging to 16290
[2025-12-13 09:15:33] 2025-12-13 14:15:02,315 | INFO     | ready for new job
[2025-12-13 09:15:33] 2025-12-13 14:15:02,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 09:15:33] 2025-12-13 14:15:02,317 | INFO     | ***************************************
[2025-12-13 09:15:33] 2025-12-13 14:15:02,317 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 09:15:33] 2025-12-13 14:15:02,317 | INFO     | ***************************************
[2025-12-13 09:15:33] 2025-12-13 14:15:02,317 | INFO     | 
[2025-12-13 09:15:33] 2025-12-13 14:15:02,318 | INFO     | architecture information:
[2025-12-13 09:15:33] 2025-12-13 14:15:02,318 | INFO     | executing command: cat /etc/os-release
[2025-12-13 09:15:33] 2025-12-13 14:15:02,332 | INFO     | cat /etc/os-release:
[2025-12-13 09:15:33] NAME="CentOS Linux"
[2025-12-13 09:15:33] VERSION="7 (Core)"
[2025-12-13 09:15:33] ID="centos"
[2025-12-13 09:15:33] ID_LIKE="rhel fedora"
[2025-12-13 09:15:33] VERSION_ID="7"
[2025-12-13 09:15:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 09:15:33] ANSI_COLOR="0;31"
[2025-12-13 09:15:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 09:15:33] HOME_URL="https://www.centos.org/"
[2025-12-13 09:15:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 09:15:33] 
[2025-12-13 09:15:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 09:15:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 09:15:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 09:15:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 09:15:33] 
[2025-12-13 09:15:33] 2025-12-13 14:15:02,333 | INFO     | ***************************************
[2025-12-13 09:15:33] 2025-12-13 14:15:02,836 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 09:15:33] 2025-12-13 14:15:02,886 | INFO     | sufficient remaining disk space (29312942080 B)
[2025-12-13 09:15:33] 2025-12-13 14:15:02,887 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 09:15:33] 2025-12-13 14:15:02,887 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 09:15:33] 2025-12-13 14:15:02,887 | INFO     | update_server=False
[2025-12-13 09:15:33] 2025-12-13 14:15:02,887 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 09:15:33] 2025-12-13 14:15:02,888 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 09:15:33] 2025-12-13 14:15:02,888 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:15:33] 2025-12-13 14:15:03,184 | INFO     | all job control threads have been joined
[2025-12-13 09:15:33] 2025-12-13 14:15:03,344 | INFO     | all data control threads have been joined
[2025-12-13 09:15:33] 2025-12-13 14:15:03,349 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 09:15:33] 2025-12-13 14:15:03,349 | INFO     | aborting loop
[2025-12-13 09:15:33] 2025-12-13 14:15:03,888 | INFO     | all payload control threads have been joined
[2025-12-13 09:15:33] 2025-12-13 14:15:03,893 | INFO     | [job] retrieve thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:03,894 | INFO     | [job] queue monitor thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,190 | INFO     | [job] control thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,259 | INFO     | [payload] validate_post thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,323 | INFO     | [data] copytool_in thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,349 | INFO     | [data] control thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,354 | INFO     | [job] job monitor thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,795 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,804 | INFO     | [job] validate thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,891 | INFO     | [data] copytool_out thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:04,893 | INFO     | [payload] control thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:05,048 | INFO     | [payload] failed_post thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:05,087 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:05,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 09:15:33] 2025-12-13 14:15:05,252 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:05,347 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:09,122 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 09:15:33] 2025-12-13 14:15:17,162 | INFO     | [monitor] cgroup control has ended
[2025-12-13 09:15:33] 2025-12-13 14:15:18,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140676821940032)>', '<ExcThread(monitor, started 140675999848192)>']
[2025-12-13 09:15:33] 2025-12-13 14:15:23,759 | INFO     | all workflow threads have been joined
[2025-12-13 09:15:33] 2025-12-13 14:15:23,759 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 09:15:33] 2025-12-13 14:15:23,759 | INFO     | traces error code: 0
[2025-12-13 09:15:33] 2025-12-13 14:15:23,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 09:15:33] 2025-12-13 14:15:32,924 | INFO     | PID=9927 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 09:15:33] 2025-12-13 14:15:32,925 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 09:15:33] 2025-12-13 14:15:32,925 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 09:15:33] 2025-12-13 14:15:32,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 09:15:33] 2025-12-13 14:15:32,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 09:15:33] 2025-12-13 14:15:32,925 | INFO     | [monitor] control thread has ended
[2025-12-13 09:15:33] 2025-12-13 14:15:33,028 [wrapper] ==== pilot stdout END ====
[2025-12-13 09:15:33] 2025-12-13 14:15:33,032 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 09:15:33] 2025-12-13 14:15:33,036 [wrapper] pilotpid: 9927
[2025-12-13 09:15:33] 2025-12-13 14:15:33,040 [wrapper] Pilot exit status: 0
[2025-12-13 09:15:33] 2025-12-13 14:15:33,055 [wrapper] pandaids: 6929266031
[2025-12-13 09:15:33] 2025-12-13 14:15:33,104 [wrapper] cleanup supervisor_pilot 15498 9928
[2025-12-13 09:15:33] 2025-12-13 14:15:33,108 [wrapper] Test setup, not cleaning
[2025-12-13 09:15:33] 2025-12-13 14:15:33,112 [wrapper] apfmon messages muted
[2025-12-13 09:15:33] 2025-12-13 14:15:33,116 [wrapper] ==== wrapper stdout END ====
[2025-12-13 09:15:33] 2025-12-13 14:15:33,120 [wrapper] ==== wrapper stderr END ====
[2025-12-13 09:15:33]  *** Error codes and diagnostics ***
[2025-12-13 09:15:33]     "exeErrorCode": 0,
[2025-12-13 09:15:33]     "exeErrorDiag": "",
[2025-12-13 09:15:33]     "pilotErrorCode": 0,
[2025-12-13 09:15:33]     "pilotErrorDiag": "",
[2025-12-13 09:15:33]  *** Listing of results directory ***
[2025-12-13 09:15:33] total 442692
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 05:01 pilot3.tar.gz
[2025-12-13 09:15:33] -rwx------ 1 boincer umatlas     36322 Dec 13 05:02 runpilot2-wrapper.sh
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 05:03 queuedata.json
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas       100 Dec 13 07:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 09:15:33] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 07:33 run_atlas
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas       105 Dec 13 07:33 job.xml
[2025-12-13 09:15:33] -rw-r--r-- 2 boincer umatlas 226663233 Dec 13 07:33 EVNT.47898761._000119.pool.root.1
[2025-12-13 09:15:33] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 07:33 start_atlas.sh
[2025-12-13 09:15:33] drwxrwx--x 2 boincer umatlas      4096 Dec 13 07:33 shared
[2025-12-13 09:15:33] -rw-r--r-- 2 boincer umatlas    592390 Dec 13 07:33 input.tar.gz
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas         0 Dec 13 07:33 boinc_lockfile
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas      2504 Dec 13 07:33 pandaJob.out
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas        57 Dec 13 07:33 setup.sh.local
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas    991736 Dec 13 07:34 agis_schedconf.cvmfs.json
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas   1516240 Dec 13 07:34 agis_ddmendpoints.agis.ALL.json
[2025-12-13 09:15:33] drwx------ 5 boincer umatlas      4096 Dec 13 07:34 pilot3
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas      5953 Dec 13 09:12 init_data.xml
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas       529 Dec 13 09:14 boinc_task_state.xml
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas 220214155 Dec 13 09:14 HITS.47898763._002333.pool.root.1
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas      1046 Dec 13 09:14 memory_monitor_summary.json
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas    399824 Dec 13 09:14 log.47898763._002333.job.log.tgz.1
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas      7842 Dec 13 09:15 heartbeat.json
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 09:15 boinc_mmap_file
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas        27 Dec 13 09:15 wrapper_checkpoint.txt
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas       744 Dec 13 09:15 pilotlog.txt
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas        95 Dec 13 09:15 pilot_heartbeat.json
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas    859218 Dec 13 09:15 log.47898763._002333.job.log.1
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas       357 Dec 13 09:15 output.list
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas       620 Dec 13 09:15 runtime_log
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas   1280000 Dec 13 09:15 result.tar.gz
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas       658 Dec 13 09:15 w4oMDmpdbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmboSKDmWcfU7m.diag
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 09:15 runtime_log.err
[2025-12-13 09:15:33] -rw-r--r-- 1 boincer umatlas     22709 Dec 13 09:15 stderr.txt
[2025-12-13 09:15:33] HITS file was successfully produced:
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas 220214155 Dec 13 09:14 shared/HITS.pool.root.1
[2025-12-13 09:15:33]  *** Contents of shared directory: ***
[2025-12-13 09:15:33] total 438264
[2025-12-13 09:15:33] -rw-r--r-- 2 boincer umatlas 226663233 Dec 13 07:33 ATLAS.root_0
[2025-12-13 09:15:33] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 07:33 start_atlas.sh
[2025-12-13 09:15:33] -rw-r--r-- 2 boincer umatlas    592390 Dec 13 07:33 input.tar.gz
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas 220214155 Dec 13 09:14 HITS.pool.root.1
[2025-12-13 09:15:33] -rw------- 1 boincer umatlas   1280000 Dec 13 09:15 result.tar.gz
09:15:35 (6197): run_atlas exited; CPU time 67084.975398
09:15:35 (6197): called boinc_finish(0)

</stderr_txt>
]]>

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