Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:27:45 (5520): wrapper (7.7.26015): starting
17:27:45 (5520): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 17:27:45] Arguments: --nthreads 8
[2025-12-13 17:27:45] Threads: 8
[2025-12-13 17:27:45] Checking for CVMFS
[2025-12-13 17:27:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 17:27:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 17:27:46] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 17:27:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 17:27:48] 2.11.2.0 29536 112850 126040 153967 1 95 20914382 25165824 4459 130560 12 32467843 99.865 20512848 1964 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-12-13 17:27:48] CVMFS is ok
[2025-12-13 17:27:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 17:27:48] Checking for apptainer binary...
[2025-12-13 17:27:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 17:27:48] Running /usr/bin/apptainer --version
[2025-12-13 17:27:48] apptainer version 1.3.2-1.el7
[2025-12-13 17:27:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 17:27:59] cg-vwn448.simple-grid.lan
[2025-12-13 17:27:59] apptainer works
[2025-12-13 17:27:59] Set ATHENA_PROC_NUMBER=8
[2025-12-13 17:27:59] Set ATHENA_CORE_NUMBER=8
[2025-12-13 17:27:59] Starting ATLAS job with PandaID=6929263773
[2025-12-13 17:27:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 23:55:12]  *** The last 200 lines of the pilot log: ***
[2025-12-13 23:55:12] 2025-12-13 22:54:25,312 | INFO     | monitor loop #1629: job 0:6929263773 is in state 'finished'
[2025-12-13 23:55:12] 2025-12-13 22:54:25,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 23:55:12] 2025-12-13 22:54:27,318 | INFO     | time since job start (22984s) is within the limit (174528.0s)
[2025-12-13 23:55:12] 2025-12-13 22:54:27,816 | INFO     | monitor loop #1630: job 0:6929263773 is in state 'finished'
[2025-12-13 23:55:12] 2025-12-13 22:54:27,816 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,324 | INFO     | time since job start (22986s) is within the limit (174528.0s)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,361 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-13 23:55:12] 2025-12-13 22:54:29,362 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-12-13 23:55:12] 2025-12-13 22:54:29,364 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6929263773/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,365 | INFO     | extracted standard info from prmon json
[2025-12-13 23:55:12] 2025-12-13 22:54:29,365 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 23:55:12] 2025-12-13 22:54:29,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 23:55:12] 2025-12-13 22:54:29,365 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 23:55:12] 2025-12-13 22:54:29,365 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 23:55:12] 2025-12-13 22:54:29,374 | INFO     | fitting pss+swap vs Time
[2025-12-13 23:55:12] 2025-12-13 22:54:29,375 | INFO     | sum of square deviations: 15453208812.0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,379 | INFO     | sum of deviations: 82518681225.99994
[2025-12-13 23:55:12] 2025-12-13 22:54:29,379 | INFO     | mean x: 1765655131.5
[2025-12-13 23:55:12] 2025-12-13 22:54:29,379 | INFO     | mean y: 2490435.222826087
[2025-12-13 23:55:12] 2025-12-13 22:54:29,379 | INFO     | intersect: -9425941855.044184
[2025-12-13 23:55:12] 2025-12-13 22:54:29,380 | INFO     | chi2: 5.174260528478689
[2025-12-13 23:55:12] 2025-12-13 22:54:29,381 | INFO     | sum of square deviations: 14831839022.0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,385 | INFO     | sum of deviations: 105698953713.0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,385 | INFO     | mean x: 1765654979.0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,386 | INFO     | mean y: 2496057.8044077135
[2025-12-13 23:55:12] 2025-12-13 22:54:29,386 | INFO     | intersect: -12580426641.236803
[2025-12-13 23:55:12] 2025-12-13 22:54:29,386 | INFO     | chi2: 4.428299085194382
[2025-12-13 23:55:12] 2025-12-13 22:54:29,386 | INFO     | current chi2=4.428299085194382 (change=14.416773936654298 %)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,387 | INFO     | right removable region: 362
[2025-12-13 23:55:12] 2025-12-13 22:54:29,387 | INFO     | sum of square deviations: 14831839022.0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,395 | INFO     | sum of deviations: -36155011893.0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,395 | INFO     | mean x: 1765655284.0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,395 | INFO     | mean y: 2519525.9696969697
[2025-12-13 23:55:12] 2025-12-13 22:54:29,395 | INFO     | intersect: 4306590497.699415
[2025-12-13 23:55:12] 2025-12-13 22:54:29,396 | INFO     | chi2: 1.295862851260705
[2025-12-13 23:55:12] 2025-12-13 22:54:29,396 | INFO     | current chi2=1.295862851260705 (change=74.95559328471408 %)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,397 | INFO     | sum of square deviations: 14227353269.5
[2025-12-13 23:55:12] 2025-12-13 22:54:29,401 | INFO     | sum of deviations: -61618303411.5
[2025-12-13 23:55:12] 2025-12-13 22:54:29,401 | INFO     | mean x: 1765655436.5
[2025-12-13 23:55:12] 2025-12-13 22:54:29,401 | INFO     | mean y: 2525909.879888268
[2025-12-13 23:55:12] 2025-12-13 22:54:29,401 | INFO     | intersect: 7649534481.717016
[2025-12-13 23:55:12] 2025-12-13 22:54:29,405 | INFO     | chi2: 0.9845218850925329
[2025-12-13 23:55:12] 2025-12-13 22:54:29,405 | INFO     | current chi2=0.9845218850925329 (change=24.025765216224706 %)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,405 | INFO     | left removable region: 20
[2025-12-13 23:55:12] 2025-12-13 22:54:29,406 | INFO     | sum of square deviations: 12403750705.5
[2025-12-13 23:55:12] 2025-12-13 22:54:29,410 | INFO     | sum of deviations: -20181166281.499992
[2025-12-13 23:55:12] 2025-12-13 22:54:29,411 | INFO     | mean x: 1765655558.5
[2025-12-13 23:55:12] 2025-12-13 22:54:29,411 | INFO     | mean y: 2527573.5116959065
[2025-12-13 23:55:12] 2025-12-13 22:54:29,411 | INFO     | intersect: 2875286730.6385045
[2025-12-13 23:55:12] 2025-12-13 22:54:29,411 | INFO     | chi2: 0.1617614845081813
[2025-12-13 23:55:12] 2025-12-13 22:54:29,412 | INFO     | current memory leak: -1.63 B/s (using 342 data points, chi2=0.16)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,413 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,413 | INFO     | ..............................
[2025-12-13 23:55:12] 2025-12-13 22:54:29,413 | INFO     | . Timing measurements:
[2025-12-13 23:55:12] 2025-12-13 22:54:29,413 | INFO     | . get job = 0 s
[2025-12-13 23:55:12] 2025-12-13 22:54:29,413 | INFO     | . initial setup = 2 s
[2025-12-13 23:55:12] 2025-12-13 22:54:29,413 | INFO     | . payload setup = 132 s
[2025-12-13 23:55:12] 2025-12-13 22:54:29,413 | INFO     | . stage-in = 0 s
[2025-12-13 23:55:12] 2025-12-13 22:54:29,414 | INFO     | . payload execution = 22561 s
[2025-12-13 23:55:12] 2025-12-13 22:54:29,414 | INFO     | . stage-out = 4 s
[2025-12-13 23:55:12] 2025-12-13 22:54:29,414 | INFO     | . log creation = 1 s
[2025-12-13 23:55:12] 2025-12-13 22:54:29,414 | INFO     | ..............................
[2025-12-13 23:55:12] 2025-12-13 22:54:29,582 | INFO     | 
[2025-12-13 23:55:12] 2025-12-13 22:54:29,582 | INFO     | job summary report
[2025-12-13 23:55:12] 2025-12-13 22:54:29,582 | INFO     | --------------------------------------------------
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | PanDA job id: 6929263773
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | task id: 47898763
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | errors: (none)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | pilot state: finished 
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | transexitcode: 0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | exeerrorcode: 0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | exeerrordiag: 
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | exitcode: 0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | exitmsg: OK
[2025-12-13 23:55:12] 2025-12-13 22:54:29,583 | INFO     | cpuconsumptiontime: 83731 s
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | nevents: 400
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | neventsw: 0
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | pid: 15931
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | pgrp: 15931
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | corecount: 8
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | event service: False
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | sizes: {0: 2283781, 1: 2283980, 12: 2283980, 23: 2284008, 33: 2284036, 44: 2284092, 55: 2284248, 66: 2284276, 76: 2284304, 87: 2284360, 89: 2284650, 98: 2284958, 2
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | --------------------------------------------------
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | 
[2025-12-13 23:55:12] 2025-12-13 22:54:29,584 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2025-12-13 23:55:12] 2025-12-13 22:54:29,751 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,751 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,751 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,752 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,753 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,753 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,753 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,753 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,753 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,753 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,753 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,753 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 23:55:12] 2025-12-13 22:54:29,754 | INFO     | job 6929263773 has completed (purged errors)
[2025-12-13 23:55:12] 2025-12-13 22:54:29,754 | INFO     | overall cleanup function is called
[2025-12-13 23:55:12] 2025-12-13 22:54:30,763 | INFO     | --- collectZombieJob: --- 10, [15931]
[2025-12-13 23:55:12] 2025-12-13 22:54:30,763 | INFO     | zombie collector waiting for pid 15931
[2025-12-13 23:55:12] 2025-12-13 22:54:30,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 23:55:12] 2025-12-13 22:54:30,763 | INFO     | collected zombie processes
[2025-12-13 23:55:12] 2025-12-13 22:54:30,763 | INFO     | will attempt to kill all subprocesses of pid=15931
[2025-12-13 23:55:12] 2025-12-13 22:54:30,893 | INFO     | process IDs to be killed: [15931] (in reverse order)
[2025-12-13 23:55:12] 2025-12-13 22:54:31,882 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 23:55:12] 2025-12-13 22:54:31,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 23:55:12] 2025-12-13 22:54:31,886 | INFO     | did not find any defunct processes belonging to 15931
[2025-12-13 23:55:12] 2025-12-13 22:54:31,889 | INFO     | did not find any defunct processes belonging to 15931
[2025-12-13 23:55:12] 2025-12-13 22:54:31,889 | INFO     | ready for new job
[2025-12-13 23:55:12] 2025-12-13 22:54:31,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 23:55:12] 2025-12-13 22:54:31,892 | INFO     | ***************************************
[2025-12-13 23:55:12] 2025-12-13 22:54:31,893 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 23:55:12] 2025-12-13 22:54:31,893 | INFO     | ***************************************
[2025-12-13 23:55:12] 2025-12-13 22:54:31,893 | INFO     | 
[2025-12-13 23:55:12] 2025-12-13 22:54:31,893 | INFO     | pilot is running in a VM
[2025-12-13 23:55:12] 2025-12-13 22:54:31,894 | INFO     | architecture information:
[2025-12-13 23:55:12] 2025-12-13 22:54:31,911 | INFO     | executing command: cat /etc/os-release
[2025-12-13 23:55:12] 2025-12-13 22:54:32,110 | INFO     | cat /etc/os-release:
[2025-12-13 23:55:12] NAME="CentOS Linux"
[2025-12-13 23:55:12] VERSION="7 (Core)"
[2025-12-13 23:55:12] ID="centos"
[2025-12-13 23:55:12] ID_LIKE="rhel fedora"
[2025-12-13 23:55:12] VERSION_ID="7"
[2025-12-13 23:55:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 23:55:12] ANSI_COLOR="0;31"
[2025-12-13 23:55:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 23:55:12] HOME_URL="https://www.centos.org/"
[2025-12-13 23:55:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 23:55:12] 
[2025-12-13 23:55:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 23:55:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 23:55:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 23:55:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 23:55:12] 
[2025-12-13 23:55:12] 2025-12-13 22:54:32,110 | INFO     | ***************************************
[2025-12-13 23:55:12] 2025-12-13 22:54:32,614 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2025-12-13 23:55:12] 2025-12-13 22:54:32,786 | INFO     | sufficient remaining disk space (495724789760 B)
[2025-12-13 23:55:12] 2025-12-13 22:54:32,787 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 23:55:12] 2025-12-13 22:54:32,787 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 23:55:12] 2025-12-13 22:54:32,787 | INFO     | update_server=False
[2025-12-13 23:55:12] 2025-12-13 22:54:32,787 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 23:55:12] 2025-12-13 22:54:32,831 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 23:55:12] 2025-12-13 22:54:32,831 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 23:55:12] 2025-12-13 22:54:32,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 23:55:12] 2025-12-13 22:54:32,831 | INFO     | will abort loop
[2025-12-13 23:55:12] 2025-12-13 22:54:33,398 | INFO     | all data control threads have been joined
[2025-12-13 23:55:12] 2025-12-13 22:54:33,633 | INFO     | all payload control threads have been joined
[2025-12-13 23:55:12] 2025-12-13 22:54:33,793 | INFO     | [job] retrieve thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:33,837 | INFO     | [job] job monitor thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:33,842 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:33,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 23:55:12] 2025-12-13 22:54:33,939 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:33,973 | INFO     | [payload] validate_post thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:34,290 | INFO     | [data] copytool_in thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:34,293 | INFO     | all job control threads have been joined
[2025-12-13 23:55:12] 2025-12-13 22:54:34,404 | INFO     | [data] control thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:34,456 | INFO     | [job] validate thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:34,485 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:34,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 23:55:12] 2025-12-13 22:54:34,639 | INFO     | [payload] control thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:34,961 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:35,260 | INFO     | [payload] failed_post thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:35,300 | INFO     | [job] control thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:35,607 | INFO     | [job] queue monitor thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:35,903 | INFO     | [data] copytool_out thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:54:36,051 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 23:55:12] 2025-12-13 22:54:40,060 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 23:55:12] 2025-12-13 22:55:02,562 | INFO     | PID=9314 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-12-13 23:55:12] 2025-12-13 22:55:02,562 | INFO     | .. there are 9 such processes running
[2025-12-13 23:55:12] 2025-12-13 22:55:02,563 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 23:55:12] 2025-12-13 22:55:02,564 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 23:55:12] 2025-12-13 22:55:02,564 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 23:55:12] 2025-12-13 22:55:02,734 | INFO     | [monitor] cgroup control has ended
[2025-12-13 23:55:12] 2025-12-13 22:55:03,169 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831983900480)>', '<ExcThread(monitor, started 139831669659392)>']
[2025-12-13 23:55:12] 2025-12-13 22:55:03,570 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 23:55:12] 2025-12-13 22:55:03,570 | INFO     | [monitor] control thread has ended
[2025-12-13 23:55:12] 2025-12-13 22:55:08,195 | INFO     | all workflow threads have been joined
[2025-12-13 23:55:12] 2025-12-13 22:55:08,195 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 23:55:12] 2025-12-13 22:55:08,195 | INFO     | traces error code: 0
[2025-12-13 23:55:12] 2025-12-13 22:55:08,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 23:55:12] 2025-12-13 22:55:08,529 [wrapper] ==== pilot stdout END ====
[2025-12-13 23:55:12] 2025-12-13 22:55:08,630 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 23:55:12] 2025-12-13 22:55:08,692 [wrapper] pilotpid: 9314
[2025-12-13 23:55:12] 2025-12-13 22:55:08,746 [wrapper] Pilot exit status: 0
[2025-12-13 23:55:12] 2025-12-13 22:55:09,034 [wrapper] pandaids: 6929263773
[2025-12-13 23:55:12] 2025-12-13 22:55:09,674 [wrapper] cleanup supervisor_pilot  5786 9315
[2025-12-13 23:55:12] 2025-12-13 22:55:09,721 [wrapper] Test setup, not cleaning
[2025-12-13 23:55:12] 2025-12-13 22:55:09,786 [wrapper] apfmon messages muted
[2025-12-13 23:55:12] 2025-12-13 22:55:09,830 [wrapper] ==== wrapper stdout END ====
[2025-12-13 23:55:12] 2025-12-13 22:55:09,889 [wrapper] ==== wrapper stderr END ====
[2025-12-13 23:55:12]  *** Error codes and diagnostics ***
[2025-12-13 23:55:12]     "exeErrorCode": 0,
[2025-12-13 23:55:12]     "exeErrorDiag": "",
[2025-12-13 23:55:12]     "pilotErrorCode": 0,
[2025-12-13 23:55:12]     "pilotErrorDiag": "",
[2025-12-13 23:55:12]  *** Listing of results directory ***
[2025-12-13 23:55:12] total 453628
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc      5112 Dec 13 11:01 queuedata.json
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc    579449 Dec 13 11:01 pilot3.tar.gz
[2025-12-13 23:55:12] -rwx------. 1 boinc boinc     36322 Dec 13 11:02 runpilot2-wrapper.sh
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc       100 Dec 13 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 23:55:12] -rwxr-xr-x. 1 boinc boinc      7986 Dec 13 17:27 run_atlas
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc       105 Dec 13 17:27 job.xml
[2025-12-13 23:55:12] -rw-r--r--. 2 boinc boinc 227954000 Dec 13 17:27 EVNT.47898761._000094.pool.root.1
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc      6393 Dec 13 17:27 init_data.xml
[2025-12-13 23:55:12] -rw-r--r--. 2 boinc boinc     15847 Dec 13 17:27 start_atlas.sh
[2025-12-13 23:55:12] drwxrwx--x. 2 boinc boinc        68 Dec 13 17:27 shared
[2025-12-13 23:55:12] -rw-r--r--. 2 boinc boinc    592391 Dec 13 17:27 input.tar.gz
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc         0 Dec 13 17:27 boinc_lockfile
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc      2504 Dec 13 17:27 pandaJob.out
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc    991728 Dec 13 17:31 agis_schedconf.cvmfs.json
[2025-12-13 23:55:12] drwx------. 5 boinc boinc      4096 Dec 13 17:31 pilot3
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc 225387305 Dec 13 23:51 HITS.47898763._001718.pool.root.1
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc       531 Dec 13 23:51 boinc_task_state.xml
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc      1017 Dec 13 23:52 memory_monitor_summary.json
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc   1516240 Dec 13 23:52 agis_ddmendpoints.agis.ALL.json
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc    575759 Dec 13 23:52 log.47898763._001718.job.log.tgz.1
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc      7778 Dec 13 23:54 heartbeat.json
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc      8192 Dec 13 23:55 boinc_mmap_file
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc        28 Dec 13 23:55 wrapper_checkpoint.txt
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc        95 Dec 13 23:55 pilot_heartbeat.json
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc      5070 Dec 13 23:55 pilotlog.txt
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc   3057028 Dec 13 23:55 log.47898763._001718.job.log.1
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc       357 Dec 13 23:55 output.list
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc       620 Dec 13 23:55 runtime_log
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc   3655680 Dec 13 23:55 result.tar.gz
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc      8833 Dec 13 23:55 runtime_log.err
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc       657 Dec 13 23:55 9FsLDmVdbo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9eOKDmnbpUQm.diag
[2025-12-13 23:55:12] -rw-r--r--. 1 boinc boinc     20991 Dec 13 23:55 stderr.txt
[2025-12-13 23:55:12] HITS file was successfully produced:
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc 225387305 Dec 13 23:51 shared/HITS.pool.root.1
[2025-12-13 23:55:12]  *** Contents of shared directory: ***
[2025-12-13 23:55:12] total 446888
[2025-12-13 23:55:12] -rw-r--r--. 2 boinc boinc 227954000 Dec 13 17:27 ATLAS.root_0
[2025-12-13 23:55:12] -rw-r--r--. 2 boinc boinc     15847 Dec 13 17:27 start_atlas.sh
[2025-12-13 23:55:12] -rw-r--r--. 2 boinc boinc    592391 Dec 13 17:27 input.tar.gz
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc 225387305 Dec 13 23:51 HITS.pool.root.1
[2025-12-13 23:55:12] -rw-------. 1 boinc boinc   3655680 Dec 13 23:55 result.tar.gz
23:55:14 (5520): run_atlas exited; CPU time 84062.712981
23:55:14 (5520): called boinc_finish(0)

</stderr_txt>
]]>

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