Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:23:13 (13592): wrapper (7.7.26015): starting
07:23:13 (13592): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 07:23:13] Arguments: --nthreads 8
[2025-12-13 07:23:13] Threads: 8
[2025-12-13 07:23:13] Checking for CVMFS
[2025-12-13 07:23:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 07:23:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 07:23:14] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 07:23:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 07:23:14] 2.11.2.0 11495 142176 135588 153961 3 56 15586566 18432001 1833 130560 0 98446575 99.977 5784923 26397 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 07:23:14] CVMFS is ok
[2025-12-13 07:23:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 07:23:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 07:23:14] Further information can be found at the LHC@home message board.
[2025-12-13 07:23:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 07:23:14] Checking for apptainer binary...
[2025-12-13 07:23:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 07:23:14] Running /usr/bin/apptainer --version
[2025-12-13 07:23:14] apptainer version 1.3.2-1.el7
[2025-12-13 07:23:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 07:23:14] c-206-31.aglt2.org
[2025-12-13 07:23:14] apptainer works
[2025-12-13 07:23:14] Set ATHENA_PROC_NUMBER=8
[2025-12-13 07:23:14] Set ATHENA_CORE_NUMBER=8
[2025-12-13 07:23:15] Starting ATLAS job with PandaID=6929219692
[2025-12-13 07:23:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 10:39:51]  *** The last 200 lines of the pilot log: ***
[2025-12-13 10:39:51] 2025-12-13 15:38:54,549 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 10:39:51] 2025-12-13 15:38:54,944 | INFO     | monitor loop #845: job 0:6929219692 is in state 'finished'
[2025-12-13 10:39:51] 2025-12-13 15:38:54,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 10:39:51] 2025-12-13 15:38:55,537 | INFO     | PID=17280 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 10:39:51] 2025-12-13 15:38:55,538 | INFO     | .. there are 3 such processes running
[2025-12-13 10:39:51] 2025-12-13 15:38:56,539 | INFO     | time since job start (11731s) is within the limit (174528.0s)
[2025-12-13 10:39:51] 2025-12-13 15:38:57,448 | INFO     | monitor loop #846: job 0:6929219692 is in state 'finished'
[2025-12-13 10:39:51] 2025-12-13 15:38:57,448 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,546 | INFO     | time since job start (11733s) is within the limit (174528.0s)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,659 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 10:39:51] 2025-12-13 15:38:58,665 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2350.375
[2025-12-13 10:39:51] 2025-12-13 15:38:58,669 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929219692/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,670 | INFO     | extracted standard info from prmon json
[2025-12-13 10:39:51] 2025-12-13 15:38:58,670 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 10:39:51] 2025-12-13 15:38:58,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 10:39:51] 2025-12-13 15:38:58,671 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 10:39:51] 2025-12-13 15:38:58,671 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 10:39:51] 2025-12-13 15:38:58,677 | INFO     | fitting pss+swap vs Time
[2025-12-13 10:39:51] 2025-12-13 15:38:58,677 | INFO     | sum of square deviations: 2194675568.0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,679 | INFO     | sum of deviations: -18748761963.5
[2025-12-13 10:39:51] 2025-12-13 15:38:58,679 | INFO     | mean x: 1765634455.5
[2025-12-13 10:39:51] 2025-12-13 15:38:58,679 | INFO     | mean y: 2510607.390625
[2025-12-13 10:39:51] 2025-12-13 15:38:58,679 | INFO     | intersect: 15086043045.349325
[2025-12-13 10:39:51] 2025-12-13 15:38:58,680 | INFO     | chi2: 1.6143866864045664
[2025-12-13 10:39:51] 2025-12-13 15:38:58,680 | INFO     | sum of square deviations: 2027639878.0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,682 | INFO     | sum of deviations: -17936644960.0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,682 | INFO     | mean x: 1765634303.0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,682 | INFO     | mean y: 2511349.0053475937
[2025-12-13 10:39:51] 2025-12-13 15:38:58,682 | INFO     | intersect: 15621436566.310658
[2025-12-13 10:39:51] 2025-12-13 15:38:58,683 | INFO     | chi2: 1.612671889269248
[2025-12-13 10:39:51] 2025-12-13 15:38:58,683 | INFO     | current chi2=1.612671889269248 (change=0.10621972726605378 %)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,683 | INFO     | right removable region: 186
[2025-12-13 10:39:51] 2025-12-13 15:38:58,684 | INFO     | sum of square deviations: 2027639878.0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,685 | INFO     | sum of deviations: -46209128089.99999
[2025-12-13 10:39:51] 2025-12-13 15:38:58,685 | INFO     | mean x: 1765634608.0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,686 | INFO     | mean y: 2535367.3155080215
[2025-12-13 10:39:51] 2025-12-13 15:38:58,686 | INFO     | intersect: 40240664754.3175
[2025-12-13 10:39:51] 2025-12-13 15:38:58,686 | INFO     | chi2: 0.2207984771506334
[2025-12-13 10:39:51] 2025-12-13 15:38:58,686 | INFO     | current chi2=0.2207984771506334 (change=86.32307370903943 %)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,687 | INFO     | sum of square deviations: 1869302025.5
[2025-12-13 10:39:51] 2025-12-13 15:38:58,688 | INFO     | sum of deviations: -45056713162.0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,689 | INFO     | mean x: 1765634760.5
[2025-12-13 10:39:51] 2025-12-13 15:38:58,689 | INFO     | mean y: 2534206.1208791207
[2025-12-13 10:39:51] 2025-12-13 15:38:58,689 | INFO     | intersect: 42560503901.481415
[2025-12-13 10:39:51] 2025-12-13 15:38:58,689 | INFO     | chi2: 0.20134284596443233
[2025-12-13 10:39:51] 2025-12-13 15:38:58,690 | INFO     | current chi2=0.20134284596443233 (change=8.811487940167275 %)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,690 | INFO     | left removable region: 20
[2025-12-13 10:39:51] 2025-12-13 15:38:58,690 | INFO     | sum of square deviations: 1418361477.5
[2025-12-13 10:39:51] 2025-12-13 15:38:58,691 | INFO     | sum of deviations: -32805121740.999992
[2025-12-13 10:39:51] 2025-12-13 15:38:58,692 | INFO     | mean x: 1765634882.5
[2025-12-13 10:39:51] 2025-12-13 15:38:58,692 | INFO     | mean y: 2524104.9759036144
[2025-12-13 10:39:51] 2025-12-13 15:38:58,692 | INFO     | intersect: 40839693042.09456
[2025-12-13 10:39:51] 2025-12-13 15:38:58,692 | INFO     | chi2: 0.18677642094407035
[2025-12-13 10:39:51] 2025-12-13 15:38:58,693 | INFO     | current memory leak: -23.13 B/s (using 166 data points, chi2=0.19)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,693 | INFO     | could have reported an average CPU frequency of 2536 MHz (10 samples)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,693 | INFO     | ..............................
[2025-12-13 10:39:51] 2025-12-13 15:38:58,693 | INFO     | . Timing measurements:
[2025-12-13 10:39:51] 2025-12-13 15:38:58,694 | INFO     | . get job = 0 s
[2025-12-13 10:39:51] 2025-12-13 15:38:58,694 | INFO     | . initial setup = 2 s
[2025-12-13 10:39:51] 2025-12-13 15:38:58,694 | INFO     | . payload setup = 4 s
[2025-12-13 10:39:51] 2025-12-13 15:38:58,694 | INFO     | . stage-in = 0 s
[2025-12-13 10:39:51] 2025-12-13 15:38:58,694 | INFO     | . payload execution = 11702 s
[2025-12-13 10:39:51] 2025-12-13 15:38:58,694 | INFO     | . stage-out = 2 s
[2025-12-13 10:39:51] 2025-12-13 15:38:58,695 | INFO     | . log creation = 0 s
[2025-12-13 10:39:51] 2025-12-13 15:38:58,695 | INFO     | ..............................
[2025-12-13 10:39:51] 2025-12-13 15:38:58,794 | INFO     | 
[2025-12-13 10:39:51] 2025-12-13 15:38:58,794 | INFO     | job summary report
[2025-12-13 10:39:51] 2025-12-13 15:38:58,797 | INFO     | --------------------------------------------------
[2025-12-13 10:39:51] 2025-12-13 15:38:58,798 | INFO     | PanDA job id: 6929219692
[2025-12-13 10:39:51] 2025-12-13 15:38:58,798 | INFO     | task id: 47886933
[2025-12-13 10:39:51] 2025-12-13 15:38:58,798 | INFO     | errors: (none)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,798 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 10:39:51] 2025-12-13 15:38:58,799 | INFO     | pilot state: finished 
[2025-12-13 10:39:51] 2025-12-13 15:38:58,799 | INFO     | transexitcode: 0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,799 | INFO     | exeerrorcode: 0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,799 | INFO     | exeerrordiag: 
[2025-12-13 10:39:51] 2025-12-13 15:38:58,799 | INFO     | exitcode: 0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,800 | INFO     | exitmsg: OK
[2025-12-13 10:39:51] 2025-12-13 15:38:58,800 | INFO     | cpuconsumptiontime: 88626 s
[2025-12-13 10:39:51] 2025-12-13 15:38:58,800 | INFO     | nevents: 400
[2025-12-13 10:39:51] 2025-12-13 15:38:58,800 | INFO     | neventsw: 0
[2025-12-13 10:39:51] 2025-12-13 15:38:58,800 | INFO     | pid: 23683
[2025-12-13 10:39:51] 2025-12-13 15:38:58,800 | INFO     | pgrp: 23683
[2025-12-13 10:39:51] 2025-12-13 15:38:58,801 | INFO     | corecount: 8
[2025-12-13 10:39:51] 2025-12-13 15:38:58,801 | INFO     | event service: False
[2025-12-13 10:39:51] 2025-12-13 15:38:58,801 | INFO     | sizes: {0: 2283962, 4: 2284224, 11: 2284252, 11711: 2313712, 11712: 2313711, 11714: 2322949, 11719: 2323087}
[2025-12-13 10:39:51] 2025-12-13 15:38:58,801 | INFO     | --------------------------------------------------
[2025-12-13 10:39:51] 2025-12-13 15:38:58,801 | INFO     | 
[2025-12-13 10:39:51] 2025-12-13 15:38:58,802 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-13 10:39:51] 2025-12-13 15:38:58,816 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,816 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,817 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,817 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,818 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,818 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,820 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,820 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,820 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 10:39:51] 2025-12-13 15:38:58,820 | INFO     | job 6929219692 has completed (purged errors)
[2025-12-13 10:39:51] 2025-12-13 15:38:58,820 | INFO     | overall cleanup function is called
[2025-12-13 10:39:51] 2025-12-13 15:38:59,829 | INFO     | --- collectZombieJob: --- 10, [23683]
[2025-12-13 10:39:51] 2025-12-13 15:38:59,829 | INFO     | zombie collector waiting for pid 23683
[2025-12-13 10:39:51] 2025-12-13 15:38:59,829 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 10:39:51] 2025-12-13 15:38:59,829 | INFO     | collected zombie processes
[2025-12-13 10:39:51] 2025-12-13 15:38:59,829 | INFO     | will attempt to kill all subprocesses of pid=23683
[2025-12-13 10:39:51] 2025-12-13 15:38:59,991 | INFO     | process IDs to be killed: [23683] (in reverse order)
[2025-12-13 10:39:51] 2025-12-13 15:39:00,037 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 10:39:51] 2025-12-13 15:39:00,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 10:39:51] 2025-12-13 15:39:00,042 | INFO     | did not find any defunct processes belonging to 23683
[2025-12-13 10:39:51] 2025-12-13 15:39:00,047 | INFO     | did not find any defunct processes belonging to 23683
[2025-12-13 10:39:51] 2025-12-13 15:39:00,047 | INFO     | ready for new job
[2025-12-13 10:39:51] 2025-12-13 15:39:00,048 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 10:39:51] 2025-12-13 15:39:00,051 | INFO     | ***************************************
[2025-12-13 10:39:51] 2025-12-13 15:39:00,051 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 10:39:51] 2025-12-13 15:39:00,051 | INFO     | ***************************************
[2025-12-13 10:39:51] 2025-12-13 15:39:00,051 | INFO     | 
[2025-12-13 10:39:51] 2025-12-13 15:39:00,053 | INFO     | architecture information:
[2025-12-13 10:39:51] 2025-12-13 15:39:00,053 | INFO     | executing command: cat /etc/os-release
[2025-12-13 10:39:51] 2025-12-13 15:39:00,065 | INFO     | cat /etc/os-release:
[2025-12-13 10:39:51] NAME="CentOS Linux"
[2025-12-13 10:39:51] VERSION="7 (Core)"
[2025-12-13 10:39:51] ID="centos"
[2025-12-13 10:39:51] ID_LIKE="rhel fedora"
[2025-12-13 10:39:51] VERSION_ID="7"
[2025-12-13 10:39:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 10:39:51] ANSI_COLOR="0;31"
[2025-12-13 10:39:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 10:39:51] HOME_URL="https://www.centos.org/"
[2025-12-13 10:39:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 10:39:51] 
[2025-12-13 10:39:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 10:39:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 10:39:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 10:39:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 10:39:51] 
[2025-12-13 10:39:51] 2025-12-13 15:39:00,066 | INFO     | ***************************************
[2025-12-13 10:39:51] 2025-12-13 15:39:00,569 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-13 10:39:51] 2025-12-13 15:39:00,587 | INFO     | sufficient remaining disk space (28341960704 B)
[2025-12-13 10:39:51] 2025-12-13 15:39:00,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 10:39:51] 2025-12-13 15:39:00,588 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 10:39:51] 2025-12-13 15:39:00,588 | INFO     | update_server=False
[2025-12-13 10:39:51] 2025-12-13 15:39:00,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 10:39:51] 2025-12-13 15:39:00,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 10:39:51] 2025-12-13 15:39:00,589 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 10:39:51] 2025-12-13 15:39:00,729 | INFO     | all job control threads have been joined
[2025-12-13 10:39:51] 2025-12-13 15:39:00,964 | INFO     | all data control threads have been joined
[2025-12-13 10:39:51] 2025-12-13 15:39:00,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 10:39:51] 2025-12-13 15:39:00,964 | INFO     | aborting loop
[2025-12-13 10:39:51] 2025-12-13 15:39:01,594 | INFO     | [job] retrieve thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:01,595 | INFO     | [job] queue monitor thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:01,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 10:39:51] 2025-12-13 15:39:01,716 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:01,724 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:01,734 | INFO     | [job] control thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:01,969 | INFO     | [data] control thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:01,969 | INFO     | [job] job monitor thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:01,992 | INFO     | [job] validate thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:01,993 | INFO     | [data] copytool_in thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:02,066 | INFO     | all payload control threads have been joined
[2025-12-13 10:39:51] 2025-12-13 15:39:02,102 | INFO     | [payload] validate_post thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:02,302 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:02,805 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:03,059 | INFO     | [payload] failed_post thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:03,072 | INFO     | [payload] control thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:03,714 | INFO     | [data] copytool_out thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:04,596 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 10:39:51] 2025-12-13 15:39:31,750 | INFO     | PID=17280 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 10:39:51] 2025-12-13 15:39:31,750 | INFO     | .. there are 3 such processes running
[2025-12-13 10:39:51] 2025-12-13 15:39:31,750 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 10:39:51] 2025-12-13 15:39:31,751 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 10:39:51] 2025-12-13 15:39:31,751 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 10:39:51] 2025-12-13 15:39:44,050 | INFO     | [monitor] cgroup control has ended
[2025-12-13 10:39:51] 2025-12-13 15:39:46,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140049985894208)>', '<ExcThread(monitor, started 140049412777728)>']
[2025-12-13 10:39:51] 2025-12-13 15:39:46,828 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 10:39:51] 2025-12-13 15:39:46,828 | INFO     | [monitor] control thread has ended
[2025-12-13 10:39:51] 2025-12-13 15:39:51,054 | INFO     | all workflow threads have been joined
[2025-12-13 10:39:51] 2025-12-13 15:39:51,054 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 10:39:51] 2025-12-13 15:39:51,054 | INFO     | traces error code: 0
[2025-12-13 10:39:51] 2025-12-13 15:39:51,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 10:39:51] 2025-12-13 15:39:51,206 [wrapper] ==== pilot stdout END ====
[2025-12-13 10:39:51] 2025-12-13 15:39:51,208 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 10:39:51] 2025-12-13 15:39:51,211 [wrapper] pilotpid: 17280
[2025-12-13 10:39:51] 2025-12-13 15:39:51,213 [wrapper] Pilot exit status: 0
[2025-12-13 10:39:51] 2025-12-13 15:39:51,223 [wrapper] pandaids: 6929219692
[2025-12-13 10:39:51] 2025-12-13 15:39:51,268 [wrapper] cleanup supervisor_pilot 23753 17281
[2025-12-13 10:39:51] 2025-12-13 15:39:51,271 [wrapper] Test setup, not cleaning
[2025-12-13 10:39:51] 2025-12-13 15:39:51,274 [wrapper] apfmon messages muted
[2025-12-13 10:39:51] 2025-12-13 15:39:51,276 [wrapper] ==== wrapper stdout END ====
[2025-12-13 10:39:51] 2025-12-13 15:39:51,278 [wrapper] ==== wrapper stderr END ====
[2025-12-13 10:39:51]  *** Error codes and diagnostics ***
[2025-12-13 10:39:51]     "exeErrorCode": 0,
[2025-12-13 10:39:51]     "exeErrorDiag": "",
[2025-12-13 10:39:51]     "pilotErrorCode": 0,
[2025-12-13 10:39:51]     "pilotErrorDiag": "",
[2025-12-13 10:39:51]  *** Listing of results directory ***
[2025-12-13 10:39:51] total 336604
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:48 pilot3.tar.gz
[2025-12-13 10:39:51] -rwx------ 1 boincer umatlas     36322 Dec 13 03:48 runpilot2-wrapper.sh
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 03:48 queuedata.json
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas       100 Dec 13 07:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 10:39:51] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 07:23 run_atlas
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas       105 Dec 13 07:23 job.xml
[2025-12-13 10:39:51] -rw-r--r-- 2 boincer umatlas 192887105 Dec 13 07:23 EVNT.47886929._000068.pool.root.1
[2025-12-13 10:39:51] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 07:23 start_atlas.sh
[2025-12-13 10:39:51] drwxrwx--x 2 boincer umatlas      4096 Dec 13 07:23 shared
[2025-12-13 10:39:51] -rw-r--r-- 2 boincer umatlas    592390 Dec 13 07:23 input.tar.gz
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas         0 Dec 13 07:23 boinc_lockfile
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas      2511 Dec 13 07:23 pandaJob.out
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas        57 Dec 13 07:23 setup.sh.local
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas    991736 Dec 13 07:23 agis_schedconf.cvmfs.json
[2025-12-13 10:39:51] drwx------ 5 boincer umatlas      4096 Dec 13 07:23 pilot3
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas 143713975 Dec 13 10:38 HITS.47886933._001703.pool.root.1
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas       531 Dec 13 10:38 boinc_task_state.xml
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas      1053 Dec 13 10:38 memory_monitor_summary.json
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas   1516240 Dec 13 10:38 agis_ddmendpoints.agis.ALL.json
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas    441075 Dec 13 10:38 log.47886933._001703.job.log.tgz.1
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas      7858 Dec 13 10:38 heartbeat.json
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas      5953 Dec 13 10:39 init_data.xml
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas        95 Dec 13 10:39 pilot_heartbeat.json
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 10:39 boinc_mmap_file
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas        28 Dec 13 10:39 wrapper_checkpoint.txt
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas      4821 Dec 13 10:39 pilotlog.txt
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas   1641270 Dec 13 10:39 log.47886933._001703.job.log.1
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas       357 Dec 13 10:39 output.list
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas       620 Dec 13 10:39 runtime_log
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas   2099200 Dec 13 10:39 result.tar.gz
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas      9343 Dec 13 10:39 runtime_log.err
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas       662 Dec 13 10:39 qYVLDmkTao8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9GSKDm6UFyLn.diag
[2025-12-13 10:39:51] -rw-r--r-- 1 boincer umatlas     21457 Dec 13 10:39 stderr.txt
[2025-12-13 10:39:51] HITS file was successfully produced:
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas 143713975 Dec 13 10:38 shared/HITS.pool.root.1
[2025-12-13 10:39:51]  *** Contents of shared directory: ***
[2025-12-13 10:39:51] total 331368
[2025-12-13 10:39:51] -rw-r--r-- 2 boincer umatlas 192887105 Dec 13 07:23 ATLAS.root_0
[2025-12-13 10:39:51] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 07:23 start_atlas.sh
[2025-12-13 10:39:51] -rw-r--r-- 2 boincer umatlas    592390 Dec 13 07:23 input.tar.gz
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas 143713975 Dec 13 10:38 HITS.pool.root.1
[2025-12-13 10:39:51] -rw------- 1 boincer umatlas   2099200 Dec 13 10:39 result.tar.gz
10:39:52 (13592): run_atlas exited; CPU time 88787.075482
10:39:52 (13592): called boinc_finish(0)

</stderr_txt>
]]>

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