Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:39:52 (522297): wrapper (7.7.26015): starting
16:39:52 (522297): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 16:39:52] Arguments: --nthreads 4
[2025-12-13 16:39:52] Threads: 4
[2025-12-13 16:39:52] Checking for CVMFS
[2025-12-13 16:39:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 16:39:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 16:39:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 16:39:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 16:39:52] 2.9.2.0 362371 530 71040 153965 2 57 19699914 36864001 0 130560 0 416619 99.990 21827 17905 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 16:39:52] CVMFS is ok
[2025-12-13 16:39:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 16:39:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 16:39:52] Further information can be found at the LHC@home message board.
[2025-12-13 16:39:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 16:39:52] Checking for apptainer binary...
[2025-12-13 16:39:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 16:39:52] Running /usr/bin/apptainer --version
[2025-12-13 16:39:52] apptainer version 1.4.1-1.1
[2025-12-13 16:39:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 16:39:52] thA319a
[2025-12-13 16:39:52] apptainer works
[2025-12-13 16:39:52] Set ATHENA_PROC_NUMBER=4
[2025-12-13 16:39:52] Set ATHENA_CORE_NUMBER=4
[2025-12-13 16:39:52] Starting ATLAS job with PandaID=6929219684
[2025-12-13 16:39:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:56:22]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | job 6929219684 has completed (purged errors)
[2025-12-13 17:56:22] 2025-12-13 16:55:49,796 | INFO     | overall cleanup function is called
[2025-12-13 17:56:22] 2025-12-13 16:55:50,803 | INFO     | --- collectZombieJob: --- 10, [532665]
[2025-12-13 17:56:22] 2025-12-13 16:55:50,803 | INFO     | zombie collector waiting for pid 532665
[2025-12-13 17:56:22] 2025-12-13 16:55:50,804 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 17:56:22] 2025-12-13 16:55:50,804 | INFO     | collected zombie processes
[2025-12-13 17:56:22] 2025-12-13 16:55:50,804 | INFO     | will attempt to kill all subprocesses of pid=532665
[2025-12-13 17:56:22] 2025-12-13 16:55:50,848 | INFO     | process IDs to be killed: [532665] (in reverse order)
[2025-12-13 17:56:22] 2025-12-13 16:55:50,882 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 17:56:22] 2025-12-13 16:55:50,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 17:56:22] 2025-12-13 16:55:50,884 | INFO     | did not find any defunct processes belonging to 532665
[2025-12-13 17:56:22] 2025-12-13 16:55:50,885 | INFO     | did not find any defunct processes belonging to 532665
[2025-12-13 17:56:22] 2025-12-13 16:55:50,885 | INFO     | ready for new job
[2025-12-13 17:56:22] 2025-12-13 16:55:50,885 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 17:56:22] 2025-12-13 16:55:50,886 | INFO     | ***************************************
[2025-12-13 17:56:22] 2025-12-13 16:55:50,886 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 17:56:22] 2025-12-13 16:55:50,886 | INFO     | ***************************************
[2025-12-13 17:56:22] 2025-12-13 16:55:50,886 | INFO     | 
[2025-12-13 17:56:22] 2025-12-13 16:55:50,886 | INFO     | architecture information:
[2025-12-13 17:56:22] 2025-12-13 16:55:50,887 | INFO     | executing command: cat /etc/os-release
[2025-12-13 17:56:22] 2025-12-13 16:55:50,901 | INFO     | cat /etc/os-release:
[2025-12-13 17:56:22] NAME="CentOS Linux"
[2025-12-13 17:56:22] VERSION="7 (Core)"
[2025-12-13 17:56:22] ID="centos"
[2025-12-13 17:56:22] ID_LIKE="rhel fedora"
[2025-12-13 17:56:22] VERSION_ID="7"
[2025-12-13 17:56:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 17:56:22] ANSI_COLOR="0;31"
[2025-12-13 17:56:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 17:56:22] HOME_URL="https://www.centos.org/"
[2025-12-13 17:56:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 17:56:22] 
[2025-12-13 17:56:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 17:56:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 17:56:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 17:56:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 17:56:22] 
[2025-12-13 17:56:22] 2025-12-13 16:55:50,901 | INFO     | ***************************************
[2025-12-13 17:56:22] 2025-12-13 16:55:51,404 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-13 17:56:22] 2025-12-13 16:55:51,422 | INFO     | sufficient remaining disk space (341118550016 B)
[2025-12-13 17:56:22] 2025-12-13 16:55:51,422 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 17:56:22] 2025-12-13 16:55:51,422 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 17:56:22] 2025-12-13 16:55:51,422 | INFO     | update_server=False
[2025-12-13 17:56:22] 2025-12-13 16:55:51,422 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 17:56:22] 2025-12-13 16:55:51,423 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:56:22] 2025-12-13 16:55:51,423 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:56:22] 2025-12-13 16:55:51,423 | INFO     | aborting loop
[2025-12-13 17:56:22] 2025-12-13 16:55:51,640 | INFO     | all payload control threads have been joined
[2025-12-13 17:56:22] 2025-12-13 16:55:51,859 | INFO     | all job control threads have been joined
[2025-12-13 17:56:22] 2025-12-13 16:55:52,416 | INFO     | all data control threads have been joined
[2025-12-13 17:56:22] 2025-12-13 16:55:52,428 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:52,429 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:52,429 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:52,474 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:52,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:56:22] 2025-12-13 16:55:52,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:56:22] 2025-12-13 16:55:52,597 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:52,646 | INFO     | [payload] control thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:52,834 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:52,865 | INFO     | [job] control thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:53,079 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:53,224 | INFO     | [job] validate thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:53,389 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:53,422 | INFO     | [data] control thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:53,473 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:53,576 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:54,522 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:55:56,556 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:56:22] 2025-12-13 16:56:05,072 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:56:22] 2025-12-13 16:56:06,916 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851394365248)>', '<ExcThread(monitor, started 139850225276672)>']
[2025-12-13 17:56:22] 2025-12-13 16:56:11,942 | INFO     | all workflow threads have been joined
[2025-12-13 17:56:22] 2025-12-13 16:56:11,942 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:56:22] 2025-12-13 16:56:11,942 | INFO     | traces error code: 0
[2025-12-13 17:56:22] 2025-12-13 16:56:11,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:56:22] 2025-12-13 16:56:22,162 | INFO     | PID=526086 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 17:56:22] 2025-12-13 16:56:22,162 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:56:22] 2025-12-13 16:56:22,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:56:22] 2025-12-13 16:56:22,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:56:22] 2025-12-13 16:56:22,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:56:22] 2025-12-13 16:56:22,162 | INFO     | [monitor] control thread has ended
[2025-12-13 17:56:22] 2025-12-13 16:56:22,239 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:56:22] 2025-12-13 16:56:22,243 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:56:22] 2025-12-13 16:56:22,247 [wrapper] pilotpid: 526086
[2025-12-13 17:56:22] 2025-12-13 16:56:22,251 [wrapper] Pilot exit status: 0
[2025-12-13 17:56:22] 2025-12-13 16:56:22,263 [wrapper] pandaids: 6929219684
[2025-12-13 17:56:22] 2025-12-13 16:56:22,285 [wrapper] cleanup supervisor_pilot  544832 526087
[2025-12-13 17:56:22] 2025-12-13 16:56:22,289 [wrapper] Test setup, not cleaning
[2025-12-13 17:56:22] 2025-12-13 16:56:22,294 [wrapper] apfmon messages muted
[2025-12-13 17:56:22] 2025-12-13 16:56:22,297 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:56:22] 2025-12-13 16:56:22,301 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:56:22]  *** Error codes and diagnostics ***
[2025-12-13 17:56:22]     "exeErrorCode": 0,
[2025-12-13 17:56:22]     "exeErrorDiag": "",
[2025-12-13 17:56:22]     "pilotErrorCode": 0,
[2025-12-13 17:56:22]     "pilotErrorDiag": "",
[2025-12-13 17:56:22]  *** Listing of results directory ***
[2025-12-13 17:56:22] total 341320
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:48 pilot3.tar.gz
[2025-12-13 17:56:22] -rwx------ 1 boinc boinc     36322 Dec 13 09:48 runpilot2-wrapper.sh
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc      5112 Dec 13 09:48 queuedata.json
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc       100 Dec 13 16:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:56:22] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 16:39 run_atlas
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc       105 Dec 13 16:39 job.xml
[2025-12-13 17:56:22] -rw-r--r-- 2 boinc boinc 192887105 Dec 13 16:39 EVNT.47886929._000068.pool.root.1
[2025-12-13 17:56:22] -rw-r--r-- 2 boinc boinc    592387 Dec 13 16:39 input.tar.gz
[2025-12-13 17:56:22] -rw-r--r-- 2 boinc boinc     15847 Dec 13 16:39 start_atlas.sh
[2025-12-13 17:56:22] drwxrwx--x 2 boinc boinc      4096 Dec 13 16:39 shared
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc         0 Dec 13 16:39 boinc_setup_complete
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc      6367 Dec 13 16:39 init_data.xml
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc         0 Dec 13 16:39 boinc_lockfile
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc      2511 Dec 13 16:39 pandaJob.out
[2025-12-13 17:56:22] -rw------- 1 boinc boinc    991736 Dec 13 16:39 agis_schedconf.cvmfs.json
[2025-12-13 17:56:22] -rw------- 1 boinc boinc   1516240 Dec 13 16:39 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:56:22] drwx------ 5 boinc boinc      4096 Dec 13 16:40 pilot3
[2025-12-13 17:56:22] -rw------- 1 boinc boinc        95 Dec 13 17:55 pilot_heartbeat.json
[2025-12-13 17:56:22] -rw------- 1 boinc boinc 150855586 Dec 13 17:55 HITS.47886933._001695.pool.root.1
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc       529 Dec 13 17:55 boinc_task_state.xml
[2025-12-13 17:56:22] -rw------- 1 boinc boinc      1023 Dec 13 17:55 memory_monitor_summary.json
[2025-12-13 17:56:22] -rw------- 1 boinc boinc    266810 Dec 13 17:55 log.47886933._001695.job.log.tgz.1
[2025-12-13 17:56:22] -rw------- 1 boinc boinc      7761 Dec 13 17:55 heartbeat.json
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc        27 Dec 13 17:55 wrapper_checkpoint.txt
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc      8192 Dec 13 17:55 boinc_mmap_file
[2025-12-13 17:56:22] -rw------- 1 boinc boinc       746 Dec 13 17:56 pilotlog.txt
[2025-12-13 17:56:22] -rw------- 1 boinc boinc    670719 Dec 13 17:56 log.47886933._001695.job.log.1
[2025-12-13 17:56:22] -rw------- 1 boinc boinc       357 Dec 13 17:56 output.list
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc       620 Dec 13 17:56 runtime_log
[2025-12-13 17:56:22] -rw------- 1 boinc boinc    952320 Dec 13 17:56 result.tar.gz
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc      8902 Dec 13 17:56 runtime_log.err
[2025-12-13 17:56:22] -rw------- 1 boinc boinc       659 Dec 13 17:56 EkDLDmkTao8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4GSKDm84IjOm.diag
[2025-12-13 17:56:22] -rw-r--r-- 1 boinc boinc     11922 Dec 13 17:56 stderr.txt
[2025-12-13 17:56:22] HITS file was successfully produced:
[2025-12-13 17:56:22] -rw------- 1 boinc boinc 150855586 Dec 13 17:55 shared/HITS.pool.root.1
[2025-12-13 17:56:22]  *** Contents of shared directory: ***
[2025-12-13 17:56:22] total 337220
[2025-12-13 17:56:22] -rw-r--r-- 2 boinc boinc 192887105 Dec 13 16:39 ATLAS.root_0
[2025-12-13 17:56:22] -rw-r--r-- 2 boinc boinc    592387 Dec 13 16:39 input.tar.gz
[2025-12-13 17:56:22] -rw-r--r-- 2 boinc boinc     15847 Dec 13 16:39 start_atlas.sh
[2025-12-13 17:56:22] -rw------- 1 boinc boinc 150855586 Dec 13 17:55 HITS.pool.root.1
[2025-12-13 17:56:22] -rw------- 1 boinc boinc    952320 Dec 13 17:56 result.tar.gz
17:56:24 (522297): run_atlas exited; CPU time 17084.281391
17:56:24 (522297): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN