Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:56:27 (547444): wrapper (7.7.26015): starting
17:56:27 (547444): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 17:56:27] Arguments: --nthreads 4
[2025-12-13 17:56:27] Threads: 4
[2025-12-13 17:56:27] Checking for CVMFS
[2025-12-13 17:56:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 17:56:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 17:56:27] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 17:56:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 17:56:27] 2.9.2.0 362371 606 72280 153967 2 57 19710249 36864001 0 130560 0 482405 99.989 24620 18264 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 17:56:27] CVMFS is ok
[2025-12-13 17:56:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 17:56:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 17:56:27] Further information can be found at the LHC@home message board.
[2025-12-13 17:56:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 17:56:27] Checking for apptainer binary...
[2025-12-13 17:56:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 17:56:27] Running /usr/bin/apptainer --version
[2025-12-13 17:56:27] apptainer version 1.4.1-1.1
[2025-12-13 17:56:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 17:56:27] thA319a
[2025-12-13 17:56:27] apptainer works
[2025-12-13 17:56:27] Set ATHENA_PROC_NUMBER=4
[2025-12-13 17:56:27] Set ATHENA_CORE_NUMBER=4
[2025-12-13 17:56:27] Starting ATLAS job with PandaID=6929219681
[2025-12-13 17:56:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 19:10:56]  *** The last 200 lines of the pilot log: ***
[2025-12-13 19:10:56] 2025-12-13 18:10:37,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 19:10:56] 2025-12-13 18:10:37,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 19:10:56] 2025-12-13 18:10:37,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 19:10:56] 2025-12-13 18:10:37,980 | INFO     | job 6929219681 has completed (purged errors)
[2025-12-13 19:10:56] 2025-12-13 18:10:37,980 | INFO     | overall cleanup function is called
[2025-12-13 19:10:56] 2025-12-13 18:10:38,987 | INFO     | --- collectZombieJob: --- 10, [557821]
[2025-12-13 19:10:56] 2025-12-13 18:10:38,987 | INFO     | zombie collector waiting for pid 557821
[2025-12-13 19:10:56] 2025-12-13 18:10:38,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 19:10:56] 2025-12-13 18:10:38,987 | INFO     | collected zombie processes
[2025-12-13 19:10:56] 2025-12-13 18:10:38,987 | INFO     | will attempt to kill all subprocesses of pid=557821
[2025-12-13 19:10:56] 2025-12-13 18:10:39,032 | INFO     | process IDs to be killed: [557821] (in reverse order)
[2025-12-13 19:10:56] 2025-12-13 18:10:39,065 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 19:10:56] 2025-12-13 18:10:39,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 19:10:56] 2025-12-13 18:10:39,067 | INFO     | did not find any defunct processes belonging to 557821
[2025-12-13 19:10:56] 2025-12-13 18:10:39,068 | INFO     | did not find any defunct processes belonging to 557821
[2025-12-13 19:10:56] 2025-12-13 18:10:39,069 | INFO     | ready for new job
[2025-12-13 19:10:56] 2025-12-13 18:10:39,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 19:10:56] 2025-12-13 18:10:39,069 | INFO     | ***************************************
[2025-12-13 19:10:56] 2025-12-13 18:10:39,069 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 19:10:56] 2025-12-13 18:10:39,069 | INFO     | ***************************************
[2025-12-13 19:10:56] 2025-12-13 18:10:39,069 | INFO     | 
[2025-12-13 19:10:56] 2025-12-13 18:10:39,070 | INFO     | architecture information:
[2025-12-13 19:10:56] 2025-12-13 18:10:39,070 | INFO     | executing command: cat /etc/os-release
[2025-12-13 19:10:56] 2025-12-13 18:10:39,084 | INFO     | cat /etc/os-release:
[2025-12-13 19:10:56] NAME="CentOS Linux"
[2025-12-13 19:10:56] VERSION="7 (Core)"
[2025-12-13 19:10:56] ID="centos"
[2025-12-13 19:10:56] ID_LIKE="rhel fedora"
[2025-12-13 19:10:56] VERSION_ID="7"
[2025-12-13 19:10:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 19:10:56] ANSI_COLOR="0;31"
[2025-12-13 19:10:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 19:10:56] HOME_URL="https://www.centos.org/"
[2025-12-13 19:10:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 19:10:56] 
[2025-12-13 19:10:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 19:10:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 19:10:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 19:10:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 19:10:56] 
[2025-12-13 19:10:56] 2025-12-13 18:10:39,084 | INFO     | ***************************************
[2025-12-13 19:10:56] 2025-12-13 18:10:39,588 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-13 19:10:56] 2025-12-13 18:10:39,606 | INFO     | sufficient remaining disk space (340846968832 B)
[2025-12-13 19:10:56] 2025-12-13 18:10:39,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 19:10:56] 2025-12-13 18:10:39,606 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 19:10:56] 2025-12-13 18:10:39,606 | INFO     | update_server=False
[2025-12-13 19:10:56] 2025-12-13 18:10:39,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 19:10:56] 2025-12-13 18:10:39,607 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-13 19:10:56] 2025-12-13 18:10:39,607 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 19:10:56] 2025-12-13 18:10:39,607 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 19:10:56] 2025-12-13 18:10:39,607 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 19:10:56] 2025-12-13 18:10:39,647 | INFO     | all data control threads have been joined
[2025-12-13 19:10:56] 2025-12-13 18:10:39,754 | INFO     | all job control threads have been joined
[2025-12-13 19:10:56] 2025-12-13 18:10:39,977 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 19:10:56] 2025-12-13 18:10:39,977 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 19:10:56] 2025-12-13 18:10:39,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 19:10:56] 2025-12-13 18:10:39,977 | INFO     | will abort loop
[2025-12-13 19:10:56] 2025-12-13 18:10:40,246 | INFO     | all payload control threads have been joined
[2025-12-13 19:10:56] 2025-12-13 18:10:40,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 19:10:56] 2025-12-13 18:10:40,345 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 19:10:56] 2025-12-13 18:10:40,612 | INFO     | [job] retrieve thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:40,653 | INFO     | [data] control thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:40,702 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:40,760 | INFO     | [job] control thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:40,880 | INFO     | [monitor] cgroup control has ended
[2025-12-13 19:10:56] 2025-12-13 18:10:40,983 | INFO     | [job] job monitor thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:41,112 | INFO     | [payload] validate_post thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:41,251 | INFO     | [payload] control thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:41,264 | INFO     | [data] copytool_in thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:41,705 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:41,969 | INFO     | [job] validate thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:42,081 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:42,160 | INFO     | [payload] failed_post thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:42,316 | INFO     | [data] copytool_out thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:42,565 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 19:10:56] 2025-12-13 18:10:43,571 | INFO     | [job] queue monitor thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:44,352 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:50,091 | INFO     | job.realtimelogging is not enabled
[2025-12-13 19:10:56] 2025-12-13 18:10:51,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 19:10:56] 2025-12-13 18:10:51,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140480551929664)>', '<ExcThread(monitor, started 140479756744448)>']
[2025-12-13 19:10:56] 2025-12-13 18:10:51,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 19:10:56] 2025-12-13 18:10:51,672 | INFO     | [monitor] control thread has ended
[2025-12-13 19:10:56] 2025-12-13 18:10:56,591 | INFO     | all workflow threads have been joined
[2025-12-13 19:10:56] 2025-12-13 18:10:56,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 19:10:56] 2025-12-13 18:10:56,592 | INFO     | traces error code: 0
[2025-12-13 19:10:56] 2025-12-13 18:10:56,592 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 19:10:56] 2025-12-13 18:10:56,668 [wrapper] ==== pilot stdout END ====
[2025-12-13 19:10:56] 2025-12-13 18:10:56,673 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 19:10:56] 2025-12-13 18:10:56,677 [wrapper] pilotpid: 551236
[2025-12-13 19:10:56] 2025-12-13 18:10:56,680 [wrapper] Pilot exit status: 0
[2025-12-13 19:10:56] 2025-12-13 18:10:56,692 [wrapper] pandaids: 6929219681
[2025-12-13 19:10:56] 2025-12-13 18:10:56,715 [wrapper] cleanup supervisor_pilot  567451 551237
[2025-12-13 19:10:56] 2025-12-13 18:10:56,719 [wrapper] Test setup, not cleaning
[2025-12-13 19:10:56] 2025-12-13 18:10:56,723 [wrapper] apfmon messages muted
[2025-12-13 19:10:56] 2025-12-13 18:10:56,727 [wrapper] ==== wrapper stdout END ====
[2025-12-13 19:10:56] 2025-12-13 18:10:56,730 [wrapper] ==== wrapper stderr END ====
[2025-12-13 19:10:56]  *** Error codes and diagnostics ***
[2025-12-13 19:10:56]     "exeErrorCode": 0,
[2025-12-13 19:10:56]     "exeErrorDiag": "",
[2025-12-13 19:10:56]     "pilotErrorCode": 0,
[2025-12-13 19:10:56]     "pilotErrorDiag": "",
[2025-12-13 19:10:56]  *** Listing of results directory ***
[2025-12-13 19:10:56] total 338776
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:48 pilot3.tar.gz
[2025-12-13 19:10:56] -rwx------ 1 boinc boinc     36322 Dec 13 09:48 runpilot2-wrapper.sh
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc      5112 Dec 13 09:48 queuedata.json
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc       100 Dec 13 17:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 19:10:56] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 17:56 run_atlas
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc       105 Dec 13 17:56 job.xml
[2025-12-13 19:10:56] -rw-r--r-- 2 boinc boinc 192887105 Dec 13 17:56 EVNT.47886929._000068.pool.root.1
[2025-12-13 19:10:56] -rw-r--r-- 2 boinc boinc    592389 Dec 13 17:56 input.tar.gz
[2025-12-13 19:10:56] -rw-r--r-- 2 boinc boinc     15847 Dec 13 17:56 start_atlas.sh
[2025-12-13 19:10:56] drwxrwx--x 2 boinc boinc      4096 Dec 13 17:56 shared
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc         0 Dec 13 17:56 boinc_setup_complete
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc      6367 Dec 13 17:56 init_data.xml
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc         0 Dec 13 17:56 boinc_lockfile
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc      2511 Dec 13 17:56 pandaJob.out
[2025-12-13 19:10:56] -rw------- 1 boinc boinc    991728 Dec 13 17:56 agis_schedconf.cvmfs.json
[2025-12-13 19:10:56] -rw------- 1 boinc boinc   1516240 Dec 13 17:56 agis_ddmendpoints.agis.ALL.json
[2025-12-13 19:10:56] drwx------ 5 boinc boinc      4096 Dec 13 17:56 pilot3
[2025-12-13 19:10:56] -rw------- 1 boinc boinc        95 Dec 13 19:09 pilot_heartbeat.json
[2025-12-13 19:10:56] -rw------- 1 boinc boinc 148279783 Dec 13 19:10 HITS.47886933._001692.pool.root.1
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc       529 Dec 13 19:10 boinc_task_state.xml
[2025-12-13 19:10:56] -rw------- 1 boinc boinc      1019 Dec 13 19:10 memory_monitor_summary.json
[2025-12-13 19:10:56] -rw------- 1 boinc boinc    262255 Dec 13 19:10 log.47886933._001692.job.log.tgz.1
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc      8192 Dec 13 19:10 boinc_mmap_file
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc        27 Dec 13 19:10 wrapper_checkpoint.txt
[2025-12-13 19:10:56] -rw------- 1 boinc boinc      7759 Dec 13 19:10 heartbeat.json
[2025-12-13 19:10:56] -rw------- 1 boinc boinc      4814 Dec 13 19:10 pilotlog.txt
[2025-12-13 19:10:56] -rw------- 1 boinc boinc    654627 Dec 13 19:10 log.47886933._001692.job.log.1
[2025-12-13 19:10:56] -rw------- 1 boinc boinc       357 Dec 13 19:10 output.list
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc       620 Dec 13 19:10 runtime_log
[2025-12-13 19:10:56] -rw------- 1 boinc boinc    931840 Dec 13 19:10 result.tar.gz
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc      8902 Dec 13 19:10 runtime_log.err
[2025-12-13 19:10:56] -rw------- 1 boinc boinc       659 Dec 13 19:10 TwALDmkTao8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3GSKDmeCZXdn.diag
[2025-12-13 19:10:56] -rw-r--r-- 1 boinc boinc     11345 Dec 13 19:10 stderr.txt
[2025-12-13 19:10:56] HITS file was successfully produced:
[2025-12-13 19:10:56] -rw------- 1 boinc boinc 148279783 Dec 13 19:10 shared/HITS.pool.root.1
[2025-12-13 19:10:56]  *** Contents of shared directory: ***
[2025-12-13 19:10:56] total 334692
[2025-12-13 19:10:56] -rw-r--r-- 2 boinc boinc 192887105 Dec 13 17:56 ATLAS.root_0
[2025-12-13 19:10:56] -rw-r--r-- 2 boinc boinc    592389 Dec 13 17:56 input.tar.gz
[2025-12-13 19:10:56] -rw-r--r-- 2 boinc boinc     15847 Dec 13 17:56 start_atlas.sh
[2025-12-13 19:10:56] -rw------- 1 boinc boinc 148279783 Dec 13 19:10 HITS.pool.root.1
[2025-12-13 19:10:56] -rw------- 1 boinc boinc    931840 Dec 13 19:10 result.tar.gz
19:10:57 (547444): run_atlas exited; CPU time 16634.094763
19:10:57 (547444): called boinc_finish(0)

</stderr_txt>
]]>

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