Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:46:28 (9165): wrapper (7.7.26015): starting
06:46:28 (9165): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 06:46:28] Arguments: --nthreads 12
[2025-12-13 06:46:28] Threads: 12
[2025-12-13 06:46:28] Checking for CVMFS
[2025-12-13 06:46:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 06:46:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 06:46:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 06:46:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 06:46:29] 2.11.2.0 2945 312120 92424 153959 1 59 13547937 20275200 1 130560 2 137167297 99.963 18421898 15427 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 06:46:29] CVMFS is ok
[2025-12-13 06:46:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 06:46:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 06:46:29] Further information can be found at the LHC@home message board.
[2025-12-13 06:46:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 06:46:29] Checking for apptainer binary...
[2025-12-13 06:46:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 06:46:29] Running /usr/bin/apptainer --version
[2025-12-13 06:46:29] apptainer version 1.3.2-1.el7
[2025-12-13 06:46:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 06:46:30] c-205-2.aglt2.org
[2025-12-13 06:46:30] apptainer works
[2025-12-13 06:46:30] Set ATHENA_PROC_NUMBER=12
[2025-12-13 06:46:30] Set ATHENA_CORE_NUMBER=12
[2025-12-13 06:46:30] Starting ATLAS job with PandaID=6929260556
[2025-12-13 06:46:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 08:28:02]  *** The last 200 lines of the pilot log: ***
[2025-12-13 08:28:02]  is_tar=False
[2025-12-13 08:28:02]  lfn=log.47898763._000461.job.log.tgz.1
[2025-12-13 08:28:02]  mtime=0
[2025-12-13 08:28:02]  protocol_id=None
[2025-12-13 08:28:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 08:28:02]  replicas=None
[2025-12-13 08:28:02]  scope=mc23_13p6TeV
[2025-12-13 08:28:02]  status=None
[2025-12-13 08:28:02]  status_code=0
[2025-12-13 08:28:02]  storage_token=
[2025-12-13 08:28:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929260556/log.47898763._000461.job.log.tgz.1
[2025-12-13 08:28:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/b4/log.47898763._000461.job.log.tgz.1
[2025-12-13 08:28:02]  workdir=None
[2025-12-13 08:28:02] ]
[2025-12-13 08:28:02] 2025-12-13 13:27:04,900 | INFO     | transferring file log.47898763._000461.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929260556/log.47898763._000461.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 08:28:02] 2025-12-13 13:27:04,900 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929260556/log.47898763._000461.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._000461.job
[2025-12-13 08:28:02] 2025-12-13 13:27:04,923 | INFO     | adding to output.list: log.47898763._000461.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/b4/log.47898763._000461.job.log.tg
[2025-12-13 08:28:02] 2025-12-13 13:27:04,924 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 08:28:02] 2025-12-13 13:27:04,924 | INFO     | summary of transferred files:
[2025-12-13 08:28:02] 2025-12-13 13:27:04,924 | INFO     |  -- lfn=log.47898763._000461.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 08:28:02] 2025-12-13 13:27:04,925 | INFO     | stage-out finished correctly
[2025-12-13 08:28:02] 2025-12-13 13:27:05,008 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 08:28:02] 2025-12-13 13:27:05,085 | INFO     | monitor loop #445: job 0:6929260556 is in state 'finished'
[2025-12-13 08:28:02] 2025-12-13 13:27:05,089 | INFO     | job 6929260556 has state=finished
[2025-12-13 08:28:02] 2025-12-13 13:27:05,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 08:28:02] 2025-12-13 13:27:05,090 | INFO     | preparing for final server update for job 6929260556 in state='finished'
[2025-12-13 08:28:02] 2025-12-13 13:27:05,091 | INFO     | this job has now completed (state=finished)
[2025-12-13 08:28:02] 2025-12-13 13:27:05,091 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 08:28:02] 2025-12-13 13:27:05,091 | INFO     | log transfer has been attempted: DONE
[2025-12-13 08:28:02] 2025-12-13 13:27:05,091 | INFO     | job 6929260556 has finished - writing final server update
[2025-12-13 08:28:02] 2025-12-13 13:27:05,091 | INFO     | total number of processed events: 400 (read)
[2025-12-13 08:28:02] 2025-12-13 13:27:05,092 | INFO     | executing command: lscpu
[2025-12-13 08:28:02] 2025-12-13 13:27:05,116 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 08:28:02] 2025-12-13 13:27:06,542 | INFO     | time since job start (6021s) is within the limit (174528.0s)
[2025-12-13 08:28:02] 2025-12-13 13:27:07,593 | INFO     | monitor loop #446: job 0:6929260556 is in state 'finished'
[2025-12-13 08:28:02] 2025-12-13 13:27:07,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 08:28:02] 2025-12-13 13:27:07,670 | INFO     | PID=12841 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 08:28:02] 2025-12-13 13:27:08,670 | INFO     | time since job start (6023s) is within the limit (174528.0s)
[2025-12-13 08:28:02] 2025-12-13 13:27:09,912 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 08:28:02] 2025-12-13 13:27:09,916 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-12-13 08:28:02] 2025-12-13 13:27:09,918 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929260556/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 08:28:02] 2025-12-13 13:27:09,920 | INFO     | extracted standard info from prmon json
[2025-12-13 08:28:02] 2025-12-13 13:27:09,920 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 08:28:02] 2025-12-13 13:27:09,920 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 08:28:02] 2025-12-13 13:27:09,920 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 08:28:02] 2025-12-13 13:27:09,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 08:28:02] 2025-12-13 13:27:09,923 | INFO     | fitting pss+swap vs Time
[2025-12-13 08:28:02] 2025-12-13 13:27:09,924 | INFO     | sum of square deviations: 241429643.0
[2025-12-13 08:28:02] 2025-12-13 13:27:09,925 | INFO     | sum of deviations: -5659297295.500001
[2025-12-13 08:28:02] 2025-12-13 13:27:09,925 | INFO     | mean x: 1765629515.5
[2025-12-13 08:28:02] 2025-12-13 13:27:09,925 | INFO     | mean y: 2718415.554347826
[2025-12-13 08:28:02] 2025-12-13 13:27:09,925 | INFO     | intersect: 41390437909.154915
[2025-12-13 08:28:02] 2025-12-13 13:27:09,925 | INFO     | chi2: 0.05460429387150872
[2025-12-13 08:28:02] 2025-12-13 13:27:09,926 | INFO     | current memory leak: -23.44 B/s (using 92 data points, chi2=0.05)
[2025-12-13 08:28:02] 2025-12-13 13:27:09,926 | INFO     | could have reported an average CPU frequency of 2131 MHz (7 samples)
[2025-12-13 08:28:02] 2025-12-13 13:27:09,926 | INFO     | ..............................
[2025-12-13 08:28:02] 2025-12-13 13:27:09,927 | INFO     | . Timing measurements:
[2025-12-13 08:28:02] 2025-12-13 13:27:09,927 | INFO     | . get job = 0 s
[2025-12-13 08:28:02] 2025-12-13 13:27:09,927 | INFO     | . initial setup = 2 s
[2025-12-13 08:28:02] 2025-12-13 13:27:09,927 | INFO     | . payload setup = 7 s
[2025-12-13 08:28:02] 2025-12-13 13:27:09,927 | INFO     | . stage-in = 0 s
[2025-12-13 08:28:02] 2025-12-13 13:27:09,927 | INFO     | . payload execution = 5991 s
[2025-12-13 08:28:02] 2025-12-13 13:27:09,927 | INFO     | . stage-out = 0 s
[2025-12-13 08:28:02] 2025-12-13 13:27:09,928 | INFO     | . log creation = 0 s
[2025-12-13 08:28:02] 2025-12-13 13:27:09,928 | INFO     | ..............................
[2025-12-13 08:28:02] 2025-12-13 13:27:10,170 | INFO     | 
[2025-12-13 08:28:02] 2025-12-13 13:27:10,170 | INFO     | job summary report
[2025-12-13 08:28:02] 2025-12-13 13:27:10,171 | INFO     | --------------------------------------------------
[2025-12-13 08:28:02] 2025-12-13 13:27:10,171 | INFO     | PanDA job id: 6929260556
[2025-12-13 08:28:02] 2025-12-13 13:27:10,171 | INFO     | task id: 47898763
[2025-12-13 08:28:02] 2025-12-13 13:27:10,171 | INFO     | errors: (none)
[2025-12-13 08:28:02] 2025-12-13 13:27:10,171 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 08:28:02] 2025-12-13 13:27:10,171 | INFO     | pilot state: finished 
[2025-12-13 08:28:02] 2025-12-13 13:27:10,172 | INFO     | transexitcode: 0
[2025-12-13 08:28:02] 2025-12-13 13:27:10,172 | INFO     | exeerrorcode: 0
[2025-12-13 08:28:02] 2025-12-13 13:27:10,172 | INFO     | exeerrordiag: 
[2025-12-13 08:28:02] 2025-12-13 13:27:10,172 | INFO     | exitcode: 0
[2025-12-13 08:28:02] 2025-12-13 13:27:10,172 | INFO     | exitmsg: OK
[2025-12-13 08:28:02] 2025-12-13 13:27:10,172 | INFO     | cpuconsumptiontime: 66739 s
[2025-12-13 08:28:02] 2025-12-13 13:27:10,173 | INFO     | nevents: 400
[2025-12-13 08:28:02] 2025-12-13 13:27:10,173 | INFO     | neventsw: 0
[2025-12-13 08:28:02] 2025-12-13 13:27:10,173 | INFO     | pid: 19273
[2025-12-13 08:28:02] 2025-12-13 13:27:10,173 | INFO     | pgrp: 19273
[2025-12-13 08:28:02] 2025-12-13 13:27:10,173 | INFO     | corecount: 12
[2025-12-13 08:28:02] 2025-12-13 13:27:10,173 | INFO     | event service: False
[2025-12-13 08:28:02] 2025-12-13 13:27:10,173 | INFO     | sizes: {0: 2283776, 1: 2283975, 6: 2284237, 11: 2284265, 6002: 2310982, 6003: 2320164, 6008: 2320302}
[2025-12-13 08:28:02] 2025-12-13 13:27:10,174 | INFO     | --------------------------------------------------
[2025-12-13 08:28:02] 2025-12-13 13:27:10,174 | INFO     | 
[2025-12-13 08:28:02] 2025-12-13 13:27:10,174 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 08:28:02] 2025-12-13 13:27:10,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,201 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,201 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,201 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,201 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,201 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,201 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,202 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,202 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,202 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,202 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,202 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,202 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,203 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 08:28:02] 2025-12-13 13:27:10,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,203 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 08:28:02] 2025-12-13 13:27:10,204 | INFO     | job 6929260556 has completed (purged errors)
[2025-12-13 08:28:02] 2025-12-13 13:27:10,204 | INFO     | overall cleanup function is called
[2025-12-13 08:28:02] 2025-12-13 13:27:11,212 | INFO     | --- collectZombieJob: --- 10, [19273]
[2025-12-13 08:28:02] 2025-12-13 13:27:11,212 | INFO     | zombie collector waiting for pid 19273
[2025-12-13 08:28:02] 2025-12-13 13:27:11,217 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 08:28:02] 2025-12-13 13:27:11,217 | INFO     | collected zombie processes
[2025-12-13 08:28:02] 2025-12-13 13:27:11,217 | INFO     | will attempt to kill all subprocesses of pid=19273
[2025-12-13 08:28:02] 2025-12-13 13:27:11,308 | INFO     | process IDs to be killed: [19273] (in reverse order)
[2025-12-13 08:28:02] 2025-12-13 13:27:11,362 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 08:28:02] 2025-12-13 13:27:11,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 08:28:02] 2025-12-13 13:27:11,366 | INFO     | did not find any defunct processes belonging to 19273
[2025-12-13 08:28:02] 2025-12-13 13:27:11,369 | INFO     | did not find any defunct processes belonging to 19273
[2025-12-13 08:28:02] 2025-12-13 13:27:11,369 | INFO     | ready for new job
[2025-12-13 08:28:02] 2025-12-13 13:27:11,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 08:28:02] 2025-12-13 13:27:11,371 | INFO     | ***************************************
[2025-12-13 08:28:02] 2025-12-13 13:27:11,371 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 08:28:02] 2025-12-13 13:27:11,371 | INFO     | ***************************************
[2025-12-13 08:28:02] 2025-12-13 13:27:11,371 | INFO     | 
[2025-12-13 08:28:02] 2025-12-13 13:27:11,372 | INFO     | architecture information:
[2025-12-13 08:28:02] 2025-12-13 13:27:11,372 | INFO     | executing command: cat /etc/os-release
[2025-12-13 08:28:02] 2025-12-13 13:27:11,388 | INFO     | cat /etc/os-release:
[2025-12-13 08:28:02] NAME="CentOS Linux"
[2025-12-13 08:28:02] VERSION="7 (Core)"
[2025-12-13 08:28:02] ID="centos"
[2025-12-13 08:28:02] ID_LIKE="rhel fedora"
[2025-12-13 08:28:02] VERSION_ID="7"
[2025-12-13 08:28:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 08:28:02] ANSI_COLOR="0;31"
[2025-12-13 08:28:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 08:28:02] HOME_URL="https://www.centos.org/"
[2025-12-13 08:28:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 08:28:02] 
[2025-12-13 08:28:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 08:28:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 08:28:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 08:28:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 08:28:02] 
[2025-12-13 08:28:02] 2025-12-13 13:27:11,388 | INFO     | ***************************************
[2025-12-13 08:28:02] 2025-12-13 13:27:11,891 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 08:28:02] 2025-12-13 13:27:11,908 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-12-13 08:28:02] 2025-12-13 13:27:11,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 08:28:02] 2025-12-13 13:27:11,909 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 08:28:02] 2025-12-13 13:27:11,909 | INFO     | update_server=False
[2025-12-13 08:28:02] 2025-12-13 13:27:11,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 08:28:02] 2025-12-13 13:27:11,909 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 08:28:02] 2025-12-13 13:27:11,909 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 08:28:02] 2025-12-13 13:27:11,910 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 08:28:02] 2025-12-13 13:27:11,910 | INFO     | aborting loop
[2025-12-13 08:28:02] 2025-12-13 13:27:12,387 | INFO     | all data control threads have been joined
[2025-12-13 08:28:02] 2025-12-13 13:27:12,503 | INFO     | all payload control threads have been joined
[2025-12-13 08:28:02] 2025-12-13 13:27:12,914 | INFO     | [job] retrieve thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:12,916 | INFO     | [job] queue monitor thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:12,916 | INFO     | [job] job monitor thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:12,979 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:13,019 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 08:28:02] 2025-12-13 13:27:13,142 | INFO     | [payload] validate_post thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:13,184 | INFO     | all job control threads have been joined
[2025-12-13 08:28:02] 2025-12-13 13:27:13,393 | INFO     | [data] control thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:13,509 | INFO     | [payload] control thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:13,561 | INFO     | [payload] failed_post thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:13,720 | INFO     | [data] copytool_in thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:13,811 | INFO     | [job] validate thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:13,837 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:14,071 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:14,190 | INFO     | [job] control thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:15,024 | INFO     | [data] copytool_out thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:15,915 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:21,920 | INFO     | job.realtimelogging is not enabled
[2025-12-13 08:28:02] 2025-12-13 13:27:22,926 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 08:28:02] 2025-12-13 13:27:41,877 | INFO     | PID=12841 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 08:28:02] 2025-12-13 13:27:41,877 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 08:28:02] 2025-12-13 13:27:41,877 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 08:28:02] 2025-12-13 13:27:41,877 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 08:28:02] 2025-12-13 13:27:55,209 | INFO     | [monitor] cgroup control has ended
[2025-12-13 08:28:02] 2025-12-13 13:27:57,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139621040969536)>', '<ExcThread(monitor, started 139620209628928)>']
[2025-12-13 08:28:02] 2025-12-13 13:27:57,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 08:28:02] 2025-12-13 13:27:57,954 | INFO     | [monitor] control thread has ended
[2025-12-13 08:28:02] 2025-12-13 13:28:02,200 | INFO     | all workflow threads have been joined
[2025-12-13 08:28:02] 2025-12-13 13:28:02,200 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 08:28:02] 2025-12-13 13:28:02,201 | INFO     | traces error code: 0
[2025-12-13 08:28:02] 2025-12-13 13:28:02,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 08:28:02] 2025-12-13 13:28:02,300 [wrapper] ==== pilot stdout END ====
[2025-12-13 08:28:02] 2025-12-13 13:28:02,304 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 08:28:02] 2025-12-13 13:28:02,308 [wrapper] pilotpid: 12841
[2025-12-13 08:28:02] 2025-12-13 13:28:02,312 [wrapper] Pilot exit status: 0
[2025-12-13 08:28:02] 2025-12-13 13:28:02,326 [wrapper] pandaids: 6929260556
[2025-12-13 08:28:02] 2025-12-13 13:28:02,375 [wrapper] cleanup supervisor_pilot 18456 12842
[2025-12-13 08:28:02] 2025-12-13 13:28:02,380 [wrapper] Test setup, not cleaning
[2025-12-13 08:28:02] 2025-12-13 13:28:02,384 [wrapper] apfmon messages muted
[2025-12-13 08:28:02] 2025-12-13 13:28:02,388 [wrapper] ==== wrapper stdout END ====
[2025-12-13 08:28:02] 2025-12-13 13:28:02,391 [wrapper] ==== wrapper stderr END ====
[2025-12-13 08:28:02]  *** Error codes and diagnostics ***
[2025-12-13 08:28:02]     "exeErrorCode": 0,
[2025-12-13 08:28:02]     "exeErrorDiag": "",
[2025-12-13 08:28:02]     "pilotErrorCode": 0,
[2025-12-13 08:28:02]     "pilotErrorDiag": "",
[2025-12-13 08:28:02]  *** Listing of results directory ***
[2025-12-13 08:28:02] total 448472
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 08:28:02] -rwx------ 1 boincer umatlas     36322 Dec 13 04:38 runpilot2-wrapper.sh
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 04:39 queuedata.json
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas       100 Dec 13 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 08:28:02] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 06:46 run_atlas
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas       105 Dec 13 06:46 job.xml
[2025-12-13 08:28:02] -rw-r--r-- 2 boincer umatlas 228648163 Dec 13 06:46 EVNT.47898761._000019.pool.root.1
[2025-12-13 08:28:02] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 06:46 start_atlas.sh
[2025-12-13 08:28:02] drwxrwx--x 2 boincer umatlas      4096 Dec 13 06:46 shared
[2025-12-13 08:28:02] -rw-r--r-- 2 boincer umatlas    592386 Dec 13 06:46 input.tar.gz
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas         0 Dec 13 06:46 boinc_lockfile
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas      2502 Dec 13 06:46 pandaJob.out
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas        57 Dec 13 06:46 setup.sh.local
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas    991728 Dec 13 06:46 agis_schedconf.cvmfs.json
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas   1516240 Dec 13 06:46 agis_ddmendpoints.agis.ALL.json
[2025-12-13 08:28:02] drwx------ 5 boincer umatlas      4096 Dec 13 06:46 pilot3
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas      5951 Dec 13 08:19 init_data.xml
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas 224145576 Dec 13 08:26 HITS.47898763._000461.pool.root.1
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas       529 Dec 13 08:26 boinc_task_state.xml
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas      1047 Dec 13 08:27 memory_monitor_summary.json
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas    402991 Dec 13 08:27 log.47898763._000461.job.log.tgz.1
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas        95 Dec 13 08:27 pilot_heartbeat.json
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas      7835 Dec 13 08:27 heartbeat.json
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 08:27 boinc_mmap_file
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas        27 Dec 13 08:27 wrapper_checkpoint.txt
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas      4818 Dec 13 08:28 pilotlog.txt
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas    855235 Dec 13 08:28 log.47898763._000461.job.log.1
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas       357 Dec 13 08:28 output.list
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas       620 Dec 13 08:28 runtime_log
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas   1280000 Dec 13 08:28 result.tar.gz
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 08:28 runtime_log.err
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas       658 Dec 13 08:28 BcAMDmZGbo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAbOKDmSXJfzm.diag
[2025-12-13 08:28:02] -rw-r--r-- 1 boincer umatlas     21666 Dec 13 08:28 stderr.txt
[2025-12-13 08:28:02] HITS file was successfully produced:
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas 224145576 Dec 13 08:26 shared/HITS.pool.root.1
[2025-12-13 08:28:02]  *** Contents of shared directory: ***
[2025-12-13 08:28:02] total 444040
[2025-12-13 08:28:02] -rw-r--r-- 2 boincer umatlas 228648163 Dec 13 06:46 ATLAS.root_0
[2025-12-13 08:28:02] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 06:46 start_atlas.sh
[2025-12-13 08:28:02] -rw-r--r-- 2 boincer umatlas    592386 Dec 13 06:46 input.tar.gz
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas 224145576 Dec 13 08:26 HITS.pool.root.1
[2025-12-13 08:28:02] -rw------- 1 boincer umatlas   1280000 Dec 13 08:28 result.tar.gz
08:28:03 (9165): run_atlas exited; CPU time 66716.828520
08:28:03 (9165): called boinc_finish(0)

</stderr_txt>
]]>

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