Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:46:23 (692917): wrapper (7.7.26015): starting
06:46:23 (692917): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 06:46:23] Arguments: --nthreads 8
[2025-12-13 06:46:23] Threads: 8
[2025-12-13 06:46:23] Checking for CVMFS
[2025-12-13 06:46:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 06:46:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 06:46:24] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 06:46:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 06:46:25] 2.13.3.0 13172 54489 395172 153959 3 659 20786812 32935936 37860 16776704 0 280028424 99.466 367964991 34247 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 06:46:25] CVMFS is ok
[2025-12-13 06:46:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 06:46:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 06:46:25] Further information can be found at the LHC@home message board.
[2025-12-13 06:46:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 06:46:25] Checking for apptainer binary...
[2025-12-13 06:46:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 06:46:25] Running /usr/bin/apptainer --version
[2025-12-13 06:46:26] apptainer version 1.4.5-2.el9
[2025-12-13 06:46:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 06:46:26] c6-6-8-3.aglt2.org
[2025-12-13 06:46:26] apptainer works
[2025-12-13 06:46:26] Set ATHENA_PROC_NUMBER=8
[2025-12-13 06:46:26] Set ATHENA_CORE_NUMBER=8
[2025-12-13 06:46:26] Starting ATLAS job with PandaID=6929260452
[2025-12-13 06:46:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 16:48:43]  *** The last 200 lines of the pilot log: ***
[2025-12-13 16:48:43] 2025-12-13 21:47:26,277 | INFO     | time since job start (35995s) is within the limit (174528.0s)
[2025-12-13 16:48:43] 2025-12-13 21:47:28,184 | INFO     | monitor loop #2090: job 0:6929260452 is in state 'finished'
[2025-12-13 16:48:43] 2025-12-13 21:47:28,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:48:43] 2025-12-13 21:47:28,284 | INFO     | time since job start (35997s) is within the limit (174528.0s)
[2025-12-13 16:48:43] 2025-12-13 21:47:29,482 [wrapper] supervise_pilot (15 min periods counter: 41)
[2025-12-13 16:48:43] 2025-12-13 21:47:30,293 | INFO     | time since job start (35999s) is within the limit (174528.0s)
[2025-12-13 16:48:43] 2025-12-13 21:47:30,689 | INFO     | monitor loop #2091: job 0:6929260452 is in state 'finished'
[2025-12-13 16:48:43] 2025-12-13 21:47:30,689 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:48:43] 2025-12-13 21:47:31,864 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 16:48:43] 2025-12-13 21:47:31,917 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2726.4444479166664
[2025-12-13 16:48:43] 2025-12-13 21:47:32,012 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6929260452/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,027 | INFO     | extracted standard info from prmon json
[2025-12-13 16:48:43] 2025-12-13 21:47:32,027 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 16:48:43] 2025-12-13 21:47:32,027 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 16:48:43] 2025-12-13 21:47:32,027 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 16:48:43] 2025-12-13 21:47:32,027 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 16:48:43] 2025-12-13 21:47:32,070 | INFO     | fitting pss+swap vs Time
[2025-12-13 16:48:43] 2025-12-13 21:47:32,071 | INFO     | sum of square deviations: 63038559722.748276
[2025-12-13 16:48:43] 2025-12-13 21:47:32,096 | INFO     | sum of deviations: 289453954018.7484
[2025-12-13 16:48:43] 2025-12-13 21:47:32,097 | INFO     | mean x: 1765644498.5850341
[2025-12-13 16:48:43] 2025-12-13 21:47:32,097 | INFO     | mean y: 2477415.5850340137
[2025-12-13 16:48:43] 2025-12-13 21:47:32,097 | INFO     | intersect: -8104826808.284493
[2025-12-13 16:48:43] 2025-12-13 21:47:32,098 | INFO     | chi2: 4.33460723358094
[2025-12-13 16:48:43] 2025-12-13 21:47:32,099 | INFO     | sum of square deviations: 61444070657.71191
[2025-12-13 16:48:43] 2025-12-13 21:47:32,128 | INFO     | sum of deviations: 325644780903.62585
[2025-12-13 16:48:43] 2025-12-13 21:47:32,129 | INFO     | mean x: 1765644346.0857632
[2025-12-13 16:48:43] 2025-12-13 21:47:32,129 | INFO     | mean y: 2480851.087478559
[2025-12-13 16:48:43] 2025-12-13 21:47:32,129 | INFO     | intersect: -9355181492.572018
[2025-12-13 16:48:43] 2025-12-13 21:47:32,129 | INFO     | chi2: 3.5586808078634786
[2025-12-13 16:48:43] 2025-12-13 21:47:32,129 | INFO     | current chi2=3.5586808078634786 (change=17.90073203648596 %)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,130 | INFO     | right removable region: 582
[2025-12-13 16:48:43] 2025-12-13 21:47:32,140 | INFO     | sum of square deviations: 61444040157.7119
[2025-12-13 16:48:43] 2025-12-13 21:47:32,157 | INFO     | sum of deviations: 117773573997.60214
[2025-12-13 16:48:43] 2025-12-13 21:47:32,158 | INFO     | mean x: 1765644651.0857632
[2025-12-13 16:48:43] 2025-12-13 21:47:32,158 | INFO     | mean y: 2493818.9279588335
[2025-12-13 16:48:43] 2025-12-13 21:47:32,158 | INFO     | intersect: -3381825969.197497
[2025-12-13 16:48:43] 2025-12-13 21:47:32,166 | INFO     | chi2: 1.178023981199476
[2025-12-13 16:48:43] 2025-12-13 21:47:32,167 | INFO     | current chi2=1.178023981199476 (change=72.8228206681998 %)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,168 | INFO     | sum of square deviations: 59876637380.17466
[2025-12-13 16:48:43] 2025-12-13 21:47:32,194 | INFO     | sum of deviations: 66858375704.57608
[2025-12-13 16:48:43] 2025-12-13 21:47:32,194 | INFO     | mean x: 1765644803.5865052
[2025-12-13 16:48:43] 2025-12-13 21:47:32,195 | INFO     | mean y: 2498766.4584775087
[2025-12-13 16:48:43] 2025-12-13 21:47:32,195 | INFO     | intersect: -1969023830.7357514
[2025-12-13 16:48:43] 2025-12-13 21:47:32,195 | INFO     | chi2: 0.9141756769392015
[2025-12-13 16:48:43] 2025-12-13 21:47:32,196 | INFO     | current chi2=0.9141756769392015 (change=22.39753251810896 %)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,196 | INFO     | left removable region: 20
[2025-12-13 16:48:43] 2025-12-13 21:47:32,196 | INFO     | sum of square deviations: 55040639724.73492
[2025-12-13 16:48:43] 2025-12-13 21:47:32,240 | INFO     | sum of deviations: 57011134623.220665
[2025-12-13 16:48:43] 2025-12-13 21:47:32,241 | INFO     | mean x: 1765644925.5818505
[2025-12-13 16:48:43] 2025-12-13 21:47:32,241 | INFO     | mean y: 2507212.8647686834
[2025-12-13 16:48:43] 2025-12-13 21:47:32,241 | INFO     | intersect: -1826349084.092781
[2025-12-13 16:48:43] 2025-12-13 21:47:32,241 | INFO     | chi2: 0.008353435454074977
[2025-12-13 16:48:43] 2025-12-13 21:47:32,242 | INFO     | current memory leak: 1.04 B/s (using 562 data points, chi2=0.01)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | could have reported an average CPU frequency of 2724 MHz (23 samples)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | ..............................
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | . Timing measurements:
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | . get job = 0 s
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | . initial setup = 4 s
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | . payload setup = 48 s
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | . stage-in = 0 s
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | . payload execution = 35848 s
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | . stage-out = 5 s
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | . log creation = 0 s
[2025-12-13 16:48:43] 2025-12-13 21:47:32,243 | INFO     | ..............................
[2025-12-13 16:48:43] 2025-12-13 21:47:32,321 | INFO     | time since job start (36001s) is within the limit (174528.0s)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,668 | INFO     | 
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | job summary report
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | --------------------------------------------------
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | PanDA job id: 6929260452
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | task id: 47898763
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | errors: (none)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | pilot state: finished 
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | transexitcode: 0
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | exeerrorcode: 0
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | exeerrordiag: 
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | exitcode: 0
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | exitmsg: OK
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | cpuconsumptiontime: 61272 s
[2025-12-13 16:48:43] 2025-12-13 21:47:32,669 | INFO     | nevents: 400
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | neventsw: 0
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | pid: 715562
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | pgrp: 715562
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | corecount: 8
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | event service: False
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | sizes: {0: 2283720, 1: 2283804, 2: 2284003, 13: 2284003, 24: 2284059, 30: 2284349, 35: 2284505, 35900: 2324542, 35901: 2324541, 35908: 2333651, 35936: 2333789}
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | --------------------------------------------------
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | 
[2025-12-13 16:48:43] 2025-12-13 21:47:32,670 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,810 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 16:48:43] 2025-12-13 21:47:32,811 | INFO     | job 6929260452 has completed (purged errors)
[2025-12-13 16:48:43] 2025-12-13 21:47:32,812 | INFO     | overall cleanup function is called
[2025-12-13 16:48:43] 2025-12-13 21:47:33,830 | INFO     | --- collectZombieJob: --- 10, [715562]
[2025-12-13 16:48:43] 2025-12-13 21:47:33,830 | INFO     | zombie collector waiting for pid 715562
[2025-12-13 16:48:43] 2025-12-13 21:47:33,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 16:48:43] 2025-12-13 21:47:33,831 | INFO     | collected zombie processes
[2025-12-13 16:48:43] 2025-12-13 21:47:33,831 | INFO     | will attempt to kill all subprocesses of pid=715562
[2025-12-13 16:48:43] 2025-12-13 21:47:36,333 | INFO     | process IDs to be killed: [715562] (in reverse order)
[2025-12-13 16:48:43] 2025-12-13 21:47:36,638 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 16:48:43] 2025-12-13 21:47:36,638 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 16:48:43] 2025-12-13 21:47:36,718 | INFO     | did not find any defunct processes belonging to 715562
[2025-12-13 16:48:43] 2025-12-13 21:47:36,809 | INFO     | did not find any defunct processes belonging to 715562
[2025-12-13 16:48:43] 2025-12-13 21:47:36,809 | INFO     | ready for new job
[2025-12-13 16:48:43] 2025-12-13 21:47:36,809 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 16:48:43] 2025-12-13 21:47:36,830 | INFO     | ***************************************
[2025-12-13 16:48:43] 2025-12-13 21:47:36,830 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 16:48:43] 2025-12-13 21:47:36,830 | INFO     | ***************************************
[2025-12-13 16:48:43] 2025-12-13 21:47:36,830 | INFO     | 
[2025-12-13 16:48:43] 2025-12-13 21:47:36,874 | INFO     | architecture information:
[2025-12-13 16:48:43] 2025-12-13 21:47:36,877 | INFO     | executing command: cat /etc/os-release
[2025-12-13 16:48:43] 2025-12-13 21:47:37,005 | INFO     | cat /etc/os-release:
[2025-12-13 16:48:43] NAME="CentOS Linux"
[2025-12-13 16:48:43] VERSION="7 (Core)"
[2025-12-13 16:48:43] ID="centos"
[2025-12-13 16:48:43] ID_LIKE="rhel fedora"
[2025-12-13 16:48:43] VERSION_ID="7"
[2025-12-13 16:48:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 16:48:43] ANSI_COLOR="0;31"
[2025-12-13 16:48:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 16:48:43] HOME_URL="https://www.centos.org/"
[2025-12-13 16:48:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 16:48:43] 
[2025-12-13 16:48:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 16:48:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 16:48:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 16:48:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 16:48:43] 
[2025-12-13 16:48:43] 2025-12-13 21:47:37,005 | INFO     | ***************************************
[2025-12-13 16:48:43] 2025-12-13 21:47:37,508 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-13 16:48:43] 2025-12-13 21:47:37,604 | INFO     | sufficient remaining disk space (94792318976 B)
[2025-12-13 16:48:43] 2025-12-13 21:47:37,604 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 16:48:43] 2025-12-13 21:47:37,604 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 16:48:43] 2025-12-13 21:47:37,604 | INFO     | update_server=False
[2025-12-13 16:48:43] 2025-12-13 21:47:37,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 16:48:43] 2025-12-13 21:47:37,605 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:48:43] 2025-12-13 21:47:37,605 | INFO     | aborting loop
[2025-12-13 16:48:43] 2025-12-13 21:47:37,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:48:43] 2025-12-13 21:47:37,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 16:48:43] 2025-12-13 21:47:37,890 | INFO     | all data control threads have been joined
[2025-12-13 16:48:43] 2025-12-13 21:47:37,991 | INFO     | all job control threads have been joined
[2025-12-13 16:48:43] 2025-12-13 21:47:38,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 16:48:43] 2025-12-13 21:47:38,610 | INFO     | [job] retrieve thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:38,611 | INFO     | [job] job monitor thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:38,630 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:38,704 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:38,726 | INFO     | [job] queue monitor thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:38,896 | INFO     | [data] control thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:38,956 | INFO     | all payload control threads have been joined
[2025-12-13 16:48:43] 2025-12-13 21:47:38,997 | INFO     | [job] control thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:39,015 | INFO     | [payload] failed_post thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:39,042 | INFO     | [payload] validate_post thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:39,247 | INFO     | [data] copytool_in thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:39,622 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:39,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:39,843 | INFO     | [data] copytool_out thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:39,964 | INFO     | [payload] control thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:40,058 | INFO     | [job] validate thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:47:42,161 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 16:48:43] 2025-12-13 21:48:08,091 | INFO     | PID=698239 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 16:48:43] 2025-12-13 21:48:08,091 | INFO     | .. there are 43 such processes running
[2025-12-13 16:48:43] 2025-12-13 21:48:08,091 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 16:48:43] 2025-12-13 21:48:08,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 16:48:43] 2025-12-13 21:48:08,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 16:48:43] 2025-12-13 21:48:34,629 | INFO     | [monitor] cgroup control has ended
[2025-12-13 16:48:43] 2025-12-13 21:48:36,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139624270538560)>', '<ExcThread(monitor, started 139623909009152)>']
[2025-12-13 16:48:43] 2025-12-13 21:48:37,277 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 16:48:43] 2025-12-13 21:48:37,277 | INFO     | [monitor] control thread has ended
[2025-12-13 16:48:43] 2025-12-13 21:48:41,558 | INFO     | all workflow threads have been joined
[2025-12-13 16:48:43] 2025-12-13 21:48:41,558 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 16:48:43] 2025-12-13 21:48:41,559 | INFO     | traces error code: 0
[2025-12-13 16:48:43] 2025-12-13 21:48:41,559 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 16:48:43] 2025-12-13 21:48:42,282 [wrapper] ==== pilot stdout END ====
[2025-12-13 16:48:43] 2025-12-13 21:48:42,296 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 16:48:43] 2025-12-13 21:48:42,312 [wrapper] pilotpid: 698239
[2025-12-13 16:48:43] 2025-12-13 21:48:42,323 [wrapper] Pilot exit status: 0
[2025-12-13 16:48:43] 2025-12-13 21:48:42,427 [wrapper] pandaids: 6929260452
[2025-12-13 16:48:43] 2025-12-13 21:48:42,545 [wrapper] cleanup supervisor_pilot 2969891 698240
[2025-12-13 16:48:43] 2025-12-13 21:48:42,580 [wrapper] Test setup, not cleaning
[2025-12-13 16:48:43] 2025-12-13 21:48:42,607 [wrapper] apfmon messages muted
[2025-12-13 16:48:43] 2025-12-13 21:48:42,635 [wrapper] ==== wrapper stdout END ====
[2025-12-13 16:48:43] 2025-12-13 21:48:42,650 [wrapper] ==== wrapper stderr END ====
[2025-12-13 16:48:43]  *** Error codes and diagnostics ***
[2025-12-13 16:48:43]     "exeErrorCode": 0,
[2025-12-13 16:48:43]     "exeErrorDiag": "",
[2025-12-13 16:48:43]     "pilotErrorCode": 0,
[2025-12-13 16:48:43]     "pilotErrorDiag": "",
[2025-12-13 16:48:43]  *** Listing of results directory ***
[2025-12-13 16:48:43] total 440256
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 04:38 queuedata.json
[2025-12-13 16:48:43] -rwx------. 1 boincer umatlas     36322 Dec 13 04:38 runpilot2-wrapper.sh
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas       100 Dec 13 06:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 16:48:43] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 06:46 run_atlas
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas       105 Dec 13 06:46 job.xml
[2025-12-13 16:48:43] -rw-r--r--. 2 boincer umatlas 222655350 Dec 13 06:46 EVNT.47898761._000015.pool.root.1
[2025-12-13 16:48:43] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 06:46 start_atlas.sh
[2025-12-13 16:48:43] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 06:46 shared
[2025-12-13 16:48:43] -rw-r--r--. 2 boincer umatlas    592390 Dec 13 06:46 input.tar.gz
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas         0 Dec 13 06:46 boinc_lockfile
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas      2502 Dec 13 06:46 pandaJob.out
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas        57 Dec 13 06:46 setup.sh.local
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas    991728 Dec 13 06:47 agis_schedconf.cvmfs.json
[2025-12-13 16:48:43] drwx------. 5 boincer umatlas      4096 Dec 13 06:47 pilot3
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas 214061297 Dec 13 16:45 HITS.47898763._000357.pool.root.1
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas       531 Dec 13 16:45 boinc_task_state.xml
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas      1042 Dec 13 16:46 memory_monitor_summary.json
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas   1516240 Dec 13 16:47 agis_ddmendpoints.agis.ALL.json
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas    717197 Dec 13 16:47 log.47898763._000357.job.log.tgz.1
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas      6878 Dec 13 16:47 init_data.xml
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas        95 Dec 13 16:47 pilot_heartbeat.json
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas      7817 Dec 13 16:47 heartbeat.json
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 16:48 boinc_mmap_file
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas        28 Dec 13 16:48 wrapper_checkpoint.txt
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas      4823 Dec 13 16:48 pilotlog.txt
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas   4370262 Dec 13 16:48 log.47898763._000357.job.log.1
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas       357 Dec 13 16:48 output.list
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas       620 Dec 13 16:48 runtime_log
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas   5109760 Dec 13 16:48 result.tar.gz
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas      9343 Dec 13 16:48 runtime_log.err
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas       657 Dec 13 16:48 bfNMDmNGbo8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnfSKDmdWUvrn.diag
[2025-12-13 16:48:43] -rw-r--r--. 1 boincer umatlas     21406 Dec 13 16:48 stderr.txt
[2025-12-13 16:48:43] HITS file was successfully produced:
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas 214061297 Dec 13 16:45 shared/HITS.pool.root.1
[2025-12-13 16:48:43]  *** Contents of shared directory: ***
[2025-12-13 16:48:43] total 432084
[2025-12-13 16:48:43] -rw-r--r--. 2 boincer umatlas 222655350 Dec 13 06:46 ATLAS.root_0
[2025-12-13 16:48:43] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 06:46 start_atlas.sh
[2025-12-13 16:48:43] -rw-r--r--. 2 boincer umatlas    592390 Dec 13 06:46 input.tar.gz
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas 214061297 Dec 13 16:45 HITS.pool.root.1
[2025-12-13 16:48:43] -rw-------. 1 boincer umatlas   5109760 Dec 13 16:48 result.tar.gz
16:49:05 (692917): run_atlas exited; CPU time 63251.897069
16:49:05 (692917): called boinc_finish(0)

</stderr_txt>
]]>

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