Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:53:05 (1965947): wrapper (7.7.26015): starting
12:53:05 (1965947): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 12:53:05] Arguments: --nthreads 4
[2025-12-13 12:53:05] Threads: 4
[2025-12-13 12:53:05] Checking for CVMFS
[2025-12-13 12:53:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 12:53:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 12:53:05] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 12:53:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 12:53:05] 2.9.2.0 1945142 4 48680 153959 3 186 18923820 36864001 0 130560 0 54245 100.000 1 2 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 12:53:05] CVMFS is ok
[2025-12-13 12:53:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 12:53:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 12:53:05] Further information can be found at the LHC@home message board.
[2025-12-13 12:53:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 12:53:05] Checking for apptainer binary...
[2025-12-13 12:53:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 12:53:05] Running /usr/bin/apptainer --version
[2025-12-13 12:53:05] apptainer version 1.4.1-1.1
[2025-12-13 12:53:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 12:53:05] thA325
[2025-12-13 12:53:05] apptainer works
[2025-12-13 12:53:05] Set ATHENA_PROC_NUMBER=4
[2025-12-13 12:53:05] Set ATHENA_CORE_NUMBER=4
[2025-12-13 12:53:05] Starting ATLAS job with PandaID=6929218688
[2025-12-13 12:53:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 12:57:19]  *** The last 200 lines of the pilot log: ***
[2025-12-13 12:57:19] 2025-12-13 11:56:26,190 | INFO     | [job] retrieve thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:26,190 | INFO     | [job] queue monitor thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:26,191 | INFO     | [job] job monitor thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:26,273 | INFO     | [data] copytool_in thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:26,341 | INFO     | all payload control threads have been joined
[2025-12-13 12:57:19] 2025-12-13 11:56:26,417 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:26,452 | INFO     | all job control threads have been joined
[2025-12-13 12:57:19] 2025-12-13 11:56:26,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 12:57:19] 2025-12-13 11:56:26,711 | INFO     | [data] control thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:26,771 | INFO     | [payload] validate_post thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:27,000 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:27,347 | INFO     | [payload] control thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:27,380 | INFO     | [job] validate thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:27,457 | INFO     | [job] control thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:27,459 | INFO     | [payload] failed_post thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:27,477 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:27,563 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:27,780 | INFO     | [data] copytool_out thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:56:30,566 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 12:57:19] 2025-12-13 11:57:13,696 | INFO     | [monitor] cgroup control has ended
[2025-12-13 12:57:19] 2025-12-13 11:57:14,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346389219136)>', '<ExcThread(monitor, started 140345295759104)>']
[2025-12-13 12:57:19] 2025-12-13 11:57:15,436 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 12:57:19] 2025-12-13 11:57:15,437 | INFO     | [monitor] control thread has ended
[2025-12-13 12:57:19] 2025-12-13 11:57:19,582 | INFO     | all workflow threads have been joined
[2025-12-13 12:57:19] 2025-12-13 11:57:19,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 12:57:19] 2025-12-13 11:57:19,582 | INFO     | traces error code: 0
[2025-12-13 12:57:19] 2025-12-13 11:57:19,582 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 12:57:19] 2025-12-13 11:57:19,643 [wrapper] ==== pilot stdout END ====
[2025-12-13 12:57:19] 2025-12-13 11:57:19,647 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 12:57:19] 2025-12-13 11:57:19,650 [wrapper] pilotpid: 1969729
[2025-12-13 12:57:19] 2025-12-13 11:57:19,654 [wrapper] Pilot exit status: 0
[2025-12-13 12:57:19] 2025-12-13 11:57:19,665 [wrapper] pandaids: 6929218688
[2025-12-13 12:57:19] 2025-12-13 11:57:19,685 [wrapper] cleanup supervisor_pilot 1969735 1969730
[2025-12-13 12:57:19] 2025-12-13 11:57:19,689 [wrapper] Test setup, not cleaning
[2025-12-13 12:57:19] 2025-12-13 11:57:19,693 [wrapper] apfmon messages muted
[2025-12-13 12:57:19] 2025-12-13 11:57:19,696 [wrapper] ==== wrapper stdout END ====
[2025-12-13 12:57:19] 2025-12-13 11:57:19,700 [wrapper] ==== wrapper stderr END ====
[2025-12-13 12:57:19]  *** Error codes and diagnostics ***
[2025-12-13 12:57:19]     "exeErrorCode": 65,
[2025-12-13 12:57:19]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-13 12:57:19]     "pilotErrorCode": 1305,
[2025-12-13 12:57:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129)",
[2025-12-13 12:57:19]  *** Listing of results directory ***
[2025-12-13 12:57:19] total 214116
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:48 pilot3.tar.gz
[2025-12-13 12:57:19] -rwx------ 1 boinc boinc     36322 Dec 13 09:48 runpilot2-wrapper.sh
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc      5112 Dec 13 09:48 queuedata.json
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc       100 Dec 13 12:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 12:57:19] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 12:53 run_atlas
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc       105 Dec 13 12:53 job.xml
[2025-12-13 12:57:19] -rw-r--r-- 2 boinc boinc 215111948 Dec 13 12:53 EVNT.47898833._000010.pool.root.1
[2025-12-13 12:57:19] -rw-r--r-- 2 boinc boinc    592384 Dec 13 12:53 input.tar.gz
[2025-12-13 12:57:19] -rw-r--r-- 2 boinc boinc     15847 Dec 13 12:53 start_atlas.sh
[2025-12-13 12:57:19] drwxrwx--x 2 boinc boinc      4096 Dec 13 12:53 shared
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc         0 Dec 13 12:53 boinc_setup_complete
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc      6368 Dec 13 12:53 init_data.xml
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc         0 Dec 13 12:53 boinc_lockfile
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc      2546 Dec 13 12:53 pandaJob.out
[2025-12-13 12:57:19] -rw------- 1 boinc boinc    991728 Dec 13 12:53 agis_schedconf.cvmfs.json
[2025-12-13 12:57:19] -rw------- 1 boinc boinc   1516240 Dec 13 12:53 agis_ddmendpoints.agis.ALL.json
[2025-12-13 12:57:19] drwx------ 5 boinc boinc      4096 Dec 13 12:53 pilot3
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc       523 Dec 13 12:54 boinc_task_state.xml
[2025-12-13 12:57:19] -rw------- 1 boinc boinc       980 Dec 13 12:54 memory_monitor_summary.json
[2025-12-13 12:57:19] -rw------- 1 boinc boinc     34098 Dec 13 12:54 log.47898836._000249.job.log.tgz.1
[2025-12-13 12:57:19] -rw------- 1 boinc boinc        95 Dec 13 12:56 pilot_heartbeat.json
[2025-12-13 12:57:19] -rw------- 1 boinc boinc      8422 Dec 13 12:56 heartbeat.json
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc      8192 Dec 13 12:57 boinc_mmap_file
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc        23 Dec 13 12:57 wrapper_checkpoint.txt
[2025-12-13 12:57:19] -rw------- 1 boinc boinc      4556 Dec 13 12:57 pilotlog.txt
[2025-12-13 12:57:19] -rw------- 1 boinc boinc     85803 Dec 13 12:57 log.47898836._000249.job.log.1
[2025-12-13 12:57:19] -rw------- 1 boinc boinc       188 Dec 13 12:57 output.list
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc       620 Dec 13 12:57 runtime_log
[2025-12-13 12:57:19] -rw------- 1 boinc boinc    143360 Dec 13 12:57 result.tar.gz
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc      8744 Dec 13 12:57 runtime_log.err
[2025-12-13 12:57:19] -rw------- 1 boinc boinc       648 Dec 13 12:57 LkuNDmkTao8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhHSKDmjw6dSo.diag
[2025-12-13 12:57:19] -rw-r--r-- 1 boinc boinc      6292 Dec 13 12:57 stderr.txt
[2025-12-13 12:57:19] No HITS result produced
[2025-12-13 12:57:19]  *** Contents of shared directory: ***
[2025-12-13 12:57:19] total 210812
[2025-12-13 12:57:19] -rw-r--r-- 2 boinc boinc 215111948 Dec 13 12:53 ATLAS.root_0
[2025-12-13 12:57:19] -rw-r--r-- 2 boinc boinc    592384 Dec 13 12:53 input.tar.gz
[2025-12-13 12:57:19] -rw-r--r-- 2 boinc boinc     15847 Dec 13 12:53 start_atlas.sh
[2025-12-13 12:57:19] -rw------- 1 boinc boinc    143360 Dec 13 12:57 result.tar.gz
12:57:20 (1965947): run_atlas exited; CPU time 27.928494
12:57:20 (1965947): called boinc_finish(0)

</stderr_txt>
]]>

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