Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:32:17 (22199): wrapper (7.7.26015): starting
06:32:17 (22199): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 06:32:17] Arguments: --nthreads 12
[2025-12-13 06:32:17] Threads: 12
[2025-12-13 06:32:17] Checking for CVMFS
[2025-12-13 06:32:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 06:32:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 06:32:18] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 06:32:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 06:32:18] 2.11.2.0 2914 312106 93976 153959 2 9 14152914 20275200 1 130560 1 137535121 99.962 18267294 14981 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 06:32:18] CVMFS is ok
[2025-12-13 06:32:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 06:32:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 06:32:18] Further information can be found at the LHC@home message board.
[2025-12-13 06:32:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 06:32:18] Checking for apptainer binary...
[2025-12-13 06:32:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 06:32:18] Running /usr/bin/apptainer --version
[2025-12-13 06:32:18] apptainer version 1.3.2-1.el7
[2025-12-13 06:32:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 06:32:19] c-205-5.aglt2.org
[2025-12-13 06:32:19] apptainer works
[2025-12-13 06:32:19] Set ATHENA_PROC_NUMBER=12
[2025-12-13 06:32:19] Set ATHENA_CORE_NUMBER=12
[2025-12-13 06:32:19] Starting ATLAS job with PandaID=6929263268
[2025-12-13 06:32:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 08:11:52]  *** The last 200 lines of the pilot log: ***
[2025-12-13 08:11:52] 2025-12-13 13:10:36,724 | INFO     | summary of transferred files:
[2025-12-13 08:11:52] 2025-12-13 13:10:36,724 | INFO     |  -- lfn=log.47898763._001335.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 08:11:52] 2025-12-13 13:10:36,724 | INFO     | stage-out finished correctly
[2025-12-13 08:11:52] 2025-12-13 13:10:37,682 | INFO     | time since job start (5881s) is within the limit (174528.0s)
[2025-12-13 08:11:52] 2025-12-13 13:10:38,394 | WARNING  | process 32597 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 08:11:52] 2025-12-13 13:10:38,395 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929263268/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 08:11:52] 2025-12-13 13:10:38,395 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929263268/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 08:11:52] 2025-12-13 13:10:38,396 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-12-13 08:11:52] 2025-12-13 13:10:38,396 | WARNING  | maxPSS not found in memory monitor output
[2025-12-13 08:11:52] 2025-12-13 13:10:38,396 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4078156 B
[2025-12-13 08:11:52] 2025-12-13 13:10:38,396 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16080 B
[2025-12-13 08:11:52] 2025-12-13 13:10:38,397 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 08:11:52] 2025-12-13 13:10:38,415 | INFO     | sufficient remaining disk space (29317136384 B)
[2025-12-13 08:11:52] 2025-12-13 13:10:38,415 | INFO     | work directory size check will use 2768240640 B as a max limit (20% grace limit added, divider=1)
[2025-12-13 08:11:52] 2025-12-13 13:10:38,416 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6929263268: 4385586 B (within 2768240640 B limit)
[2025-12-13 08:11:52] 2025-12-13 13:10:38,416 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6929263268/HITS.47898763._001335.pool.root.1 does not exist (skip from workdir size calculation)
[2025-12-13 08:11:52] 2025-12-13 13:10:38,417 | INFO     | total size of present files: 0 B (workdir size: 4385586 B)
[2025-12-13 08:11:52] 2025-12-13 13:10:38,417 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6929263268/HITS.47898763._001335.pool.root.1 since it does not exist
[2025-12-13 08:11:52] 2025-12-13 13:10:38,509 | INFO     | number of running child processes to parent process 32597: 1
[2025-12-13 08:11:52] 2025-12-13 13:10:38,509 | INFO     | maximum number of monitored processes: 6
[2025-12-13 08:11:52] 2025-12-13 13:10:39,688 | INFO     | time since job start (5883s) is within the limit (174528.0s)
[2025-12-13 08:11:52] 2025-12-13 13:10:39,857 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 08:11:52] 2025-12-13 13:10:39,940 | INFO     | job 6929263268 has state=finished
[2025-12-13 08:11:52] 2025-12-13 13:10:39,940 | INFO     | preparing for final server update for job 6929263268 in state='finished'
[2025-12-13 08:11:52] 2025-12-13 13:10:39,941 | INFO     | this job has now completed (state=finished)
[2025-12-13 08:11:52] 2025-12-13 13:10:39,941 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 08:11:52] 2025-12-13 13:10:39,941 | INFO     | log transfer has been attempted: DONE
[2025-12-13 08:11:52] 2025-12-13 13:10:39,941 | INFO     | job 6929263268 has finished - writing final server update
[2025-12-13 08:11:52] 2025-12-13 13:10:39,941 | INFO     | total number of processed events: 400 (read)
[2025-12-13 08:11:52] 2025-12-13 13:10:39,942 | INFO     | executing command: lscpu
[2025-12-13 08:11:52] 2025-12-13 13:10:39,969 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 08:11:52] 2025-12-13 13:10:41,012 | INFO     | monitor loop #435: job 0:6929263268 is in state 'finished'
[2025-12-13 08:11:52] 2025-12-13 13:10:41,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 08:11:52] 2025-12-13 13:10:41,694 | INFO     | time since job start (5885s) is within the limit (174528.0s)
[2025-12-13 08:11:52] 2025-12-13 13:10:43,516 | INFO     | monitor loop #436: job 0:6929263268 is in state 'finished'
[2025-12-13 08:11:52] 2025-12-13 13:10:43,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 08:11:52] 2025-12-13 13:10:43,698 | INFO     | time since job start (5887s) is within the limit (174528.0s)
[2025-12-13 08:11:52] 2025-12-13 13:10:44,818 | INFO     | PID=26236 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 08:11:52] 2025-12-13 13:10:45,404 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 08:11:52] 2025-12-13 13:10:45,407 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-12-13 08:11:52] 2025-12-13 13:10:45,409 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929263268/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 08:11:52] 2025-12-13 13:10:45,410 | INFO     | extracted standard info from prmon json
[2025-12-13 08:11:52] 2025-12-13 13:10:45,410 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 08:11:52] 2025-12-13 13:10:45,410 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 08:11:52] 2025-12-13 13:10:45,410 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 08:11:52] 2025-12-13 13:10:45,410 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 08:11:52] 2025-12-13 13:10:45,412 | INFO     | fitting pss+swap vs Time
[2025-12-13 08:11:52] 2025-12-13 13:10:45,412 | INFO     | sum of square deviations: 218571540.0
[2025-12-13 08:11:52] 2025-12-13 13:10:45,413 | INFO     | sum of deviations: -13223103529.0
[2025-12-13 08:11:52] 2025-12-13 13:10:45,413 | INFO     | mean x: 1765628574.0
[2025-12-13 08:11:52] 2025-12-13 13:10:45,413 | INFO     | mean y: 2773898.9438202246
[2025-12-13 08:11:52] 2025-12-13 13:10:45,413 | INFO     | intersect: 106819468459.28152
[2025-12-13 08:11:52] 2025-12-13 13:10:45,413 | INFO     | chi2: 0.07626059152954211
[2025-12-13 08:11:52] 2025-12-13 13:10:45,413 | INFO     | current memory leak: -60.50 B/s (using 89 data points, chi2=0.08)
[2025-12-13 08:11:52] 2025-12-13 13:10:45,414 | INFO     | could have reported an average CPU frequency of 2122 MHz (7 samples)
[2025-12-13 08:11:52] 2025-12-13 13:10:45,414 | INFO     | ..............................
[2025-12-13 08:11:52] 2025-12-13 13:10:45,414 | INFO     | . Timing measurements:
[2025-12-13 08:11:52] 2025-12-13 13:10:45,414 | INFO     | . get job = 0 s
[2025-12-13 08:11:52] 2025-12-13 13:10:45,414 | INFO     | . initial setup = 2 s
[2025-12-13 08:11:52] 2025-12-13 13:10:45,414 | INFO     | . payload setup = 7 s
[2025-12-13 08:11:52] 2025-12-13 13:10:45,414 | INFO     | . stage-in = 0 s
[2025-12-13 08:11:52] 2025-12-13 13:10:45,415 | INFO     | . payload execution = 5851 s
[2025-12-13 08:11:52] 2025-12-13 13:10:45,415 | INFO     | . stage-out = 0 s
[2025-12-13 08:11:52] 2025-12-13 13:10:45,415 | INFO     | . log creation = 0 s
[2025-12-13 08:11:52] 2025-12-13 13:10:45,415 | INFO     | ..............................
[2025-12-13 08:11:52] 2025-12-13 13:10:45,494 | INFO     | 
[2025-12-13 08:11:52] 2025-12-13 13:10:45,494 | INFO     | job summary report
[2025-12-13 08:11:52] 2025-12-13 13:10:45,494 | INFO     | --------------------------------------------------
[2025-12-13 08:11:52] 2025-12-13 13:10:45,494 | INFO     | PanDA job id: 6929263268
[2025-12-13 08:11:52] 2025-12-13 13:10:45,494 | INFO     | task id: 47898763
[2025-12-13 08:11:52] 2025-12-13 13:10:45,494 | INFO     | errors: (none)
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | pilot state: finished 
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | transexitcode: 0
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | exeerrorcode: 0
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | exeerrordiag: 
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | exitcode: 0
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | exitmsg: OK
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | cpuconsumptiontime: 64460 s
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | nevents: 400
[2025-12-13 08:11:52] 2025-12-13 13:10:45,495 | INFO     | neventsw: 0
[2025-12-13 08:11:52] 2025-12-13 13:10:45,496 | INFO     | pid: 32597
[2025-12-13 08:11:52] 2025-12-13 13:10:45,496 | INFO     | pgrp: 32597
[2025-12-13 08:11:52] 2025-12-13 13:10:45,496 | INFO     | corecount: 12
[2025-12-13 08:11:52] 2025-12-13 13:10:45,496 | INFO     | event service: False
[2025-12-13 08:11:52] 2025-12-13 13:10:45,496 | INFO     | sizes: {0: 2283951, 5: 2284213, 11: 2284269, 5862: 2310932, 5864: 2319930, 5867: 2320014, 5873: 2320336}
[2025-12-13 08:11:52] 2025-12-13 13:10:45,496 | INFO     | --------------------------------------------------
[2025-12-13 08:11:52] 2025-12-13 13:10:45,496 | INFO     | 
[2025-12-13 08:11:52] 2025-12-13 13:10:45,496 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 08:11:52] 2025-12-13 13:10:45,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,519 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,520 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,520 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,520 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,520 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,520 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,520 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,522 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,522 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 08:11:52] 2025-12-13 13:10:45,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,522 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 08:11:52] 2025-12-13 13:10:45,523 | INFO     | job 6929263268 has completed (purged errors)
[2025-12-13 08:11:52] 2025-12-13 13:10:45,523 | INFO     | overall cleanup function is called
[2025-12-13 08:11:52] 2025-12-13 13:10:46,531 | INFO     | --- collectZombieJob: --- 10, [32597]
[2025-12-13 08:11:52] 2025-12-13 13:10:46,531 | INFO     | zombie collector waiting for pid 32597
[2025-12-13 08:11:52] 2025-12-13 13:10:46,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 08:11:52] 2025-12-13 13:10:46,532 | INFO     | collected zombie processes
[2025-12-13 08:11:52] 2025-12-13 13:10:46,532 | INFO     | will attempt to kill all subprocesses of pid=32597
[2025-12-13 08:11:52] 2025-12-13 13:10:46,626 | INFO     | process IDs to be killed: [32597] (in reverse order)
[2025-12-13 08:11:52] 2025-12-13 13:10:46,677 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 08:11:52] 2025-12-13 13:10:46,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 08:11:52] 2025-12-13 13:10:46,679 | INFO     | did not find any defunct processes belonging to 32597
[2025-12-13 08:11:52] 2025-12-13 13:10:46,682 | INFO     | did not find any defunct processes belonging to 32597
[2025-12-13 08:11:52] 2025-12-13 13:10:46,682 | INFO     | ready for new job
[2025-12-13 08:11:52] 2025-12-13 13:10:46,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 08:11:52] 2025-12-13 13:10:46,683 | INFO     | ***************************************
[2025-12-13 08:11:52] 2025-12-13 13:10:46,683 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 08:11:52] 2025-12-13 13:10:46,683 | INFO     | ***************************************
[2025-12-13 08:11:52] 2025-12-13 13:10:46,683 | INFO     | 
[2025-12-13 08:11:52] 2025-12-13 13:10:46,684 | INFO     | architecture information:
[2025-12-13 08:11:52] 2025-12-13 13:10:46,684 | INFO     | executing command: cat /etc/os-release
[2025-12-13 08:11:52] 2025-12-13 13:10:46,699 | INFO     | cat /etc/os-release:
[2025-12-13 08:11:52] NAME="CentOS Linux"
[2025-12-13 08:11:52] VERSION="7 (Core)"
[2025-12-13 08:11:52] ID="centos"
[2025-12-13 08:11:52] ID_LIKE="rhel fedora"
[2025-12-13 08:11:52] VERSION_ID="7"
[2025-12-13 08:11:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 08:11:52] ANSI_COLOR="0;31"
[2025-12-13 08:11:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 08:11:52] HOME_URL="https://www.centos.org/"
[2025-12-13 08:11:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 08:11:52] 
[2025-12-13 08:11:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 08:11:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 08:11:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 08:11:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 08:11:52] 
[2025-12-13 08:11:52] 2025-12-13 13:10:46,700 | INFO     | ***************************************
[2025-12-13 08:11:52] 2025-12-13 13:10:47,203 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 08:11:52] 2025-12-13 13:10:47,220 | INFO     | sufficient remaining disk space (29322379264 B)
[2025-12-13 08:11:52] 2025-12-13 13:10:47,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 08:11:52] 2025-12-13 13:10:47,221 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 08:11:52] 2025-12-13 13:10:47,221 | INFO     | update_server=False
[2025-12-13 08:11:52] 2025-12-13 13:10:47,221 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 08:11:52] 2025-12-13 13:10:47,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 08:11:52] 2025-12-13 13:10:47,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 08:11:52] 2025-12-13 13:10:47,222 | INFO     | aborting loop
[2025-12-13 08:11:52] 2025-12-13 13:10:47,320 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 08:11:52] 2025-12-13 13:10:47,349 | INFO     | all data control threads have been joined
[2025-12-13 08:11:52] 2025-12-13 13:10:47,484 | INFO     | all payload control threads have been joined
[2025-12-13 08:11:52] 2025-12-13 13:10:48,227 | INFO     | [job] retrieve thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:48,227 | INFO     | [job] queue monitor thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:48,227 | INFO     | [job] job monitor thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:48,355 | INFO     | [data] control thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:48,357 | INFO     | [payload] validate_post thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:48,462 | INFO     | all job control threads have been joined
[2025-12-13 08:11:52] 2025-12-13 13:10:48,490 | INFO     | [payload] control thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:48,701 | INFO     | [data] copytool_in thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:48,966 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:49,263 | INFO     | [payload] failed_post thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:49,313 | INFO     | [job] validate thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:49,322 | INFO     | [data] copytool_out thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:49,355 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:49,468 | INFO     | [job] control thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:49,521 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:50,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 08:11:52] 2025-12-13 13:10:54,460 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:10:57,768 | INFO     | job.realtimelogging is not enabled
[2025-12-13 08:11:52] 2025-12-13 13:10:58,774 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 08:11:52] 2025-12-13 13:11:17,020 | INFO     | PID=26236 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 08:11:52] 2025-12-13 13:11:17,020 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 08:11:52] 2025-12-13 13:11:17,021 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 08:11:52] 2025-12-13 13:11:17,021 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 08:11:52] 2025-12-13 13:11:45,562 | INFO     | [monitor] cgroup control has ended
[2025-12-13 08:11:52] 2025-12-13 13:11:46,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140702010881856)>', '<ExcThread(monitor, started 140701425714944)>']
[2025-12-13 08:11:52] 2025-12-13 13:11:47,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 08:11:52] 2025-12-13 13:11:47,174 | INFO     | [monitor] control thread has ended
[2025-12-13 08:11:52] 2025-12-13 13:11:51,945 | INFO     | all workflow threads have been joined
[2025-12-13 08:11:52] 2025-12-13 13:11:51,945 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 08:11:52] 2025-12-13 13:11:51,948 | INFO     | traces error code: 0
[2025-12-13 08:11:52] 2025-12-13 13:11:51,948 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 08:11:52] 2025-12-13 13:11:52,037 [wrapper] ==== pilot stdout END ====
[2025-12-13 08:11:52] 2025-12-13 13:11:52,042 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 08:11:52] 2025-12-13 13:11:52,045 [wrapper] pilotpid: 26236
[2025-12-13 08:11:52] 2025-12-13 13:11:52,049 [wrapper] Pilot exit status: 0
[2025-12-13 08:11:52] 2025-12-13 13:11:52,066 [wrapper] pandaids: 6929263268
[2025-12-13 08:11:52] 2025-12-13 13:11:52,115 [wrapper] cleanup supervisor_pilot 31811 26237
[2025-12-13 08:11:52] 2025-12-13 13:11:52,119 [wrapper] Test setup, not cleaning
[2025-12-13 08:11:52] 2025-12-13 13:11:52,122 [wrapper] apfmon messages muted
[2025-12-13 08:11:52] 2025-12-13 13:11:52,127 [wrapper] ==== wrapper stdout END ====
[2025-12-13 08:11:52] 2025-12-13 13:11:52,130 [wrapper] ==== wrapper stderr END ====
[2025-12-13 08:11:52]  *** Error codes and diagnostics ***
[2025-12-13 08:11:52]     "exeErrorCode": 0,
[2025-12-13 08:11:52]     "exeErrorDiag": "",
[2025-12-13 08:11:52]     "pilotErrorCode": 0,
[2025-12-13 08:11:52]     "pilotErrorDiag": "",
[2025-12-13 08:11:52]  *** Listing of results directory ***
[2025-12-13 08:11:52] total 435624
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 08:11:52] -rwx------ 1 boincer umatlas     36322 Dec 13 04:31 runpilot2-wrapper.sh
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 04:31 queuedata.json
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas       100 Dec 13 06:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 08:11:52] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 06:32 run_atlas
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas       105 Dec 13 06:32 job.xml
[2025-12-13 08:11:52] -rw-r--r-- 2 boincer umatlas 222033861 Dec 13 06:32 EVNT.47898761._000054.pool.root.1
[2025-12-13 08:11:52] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 06:32 start_atlas.sh
[2025-12-13 08:11:52] drwxrwx--x 2 boincer umatlas      4096 Dec 13 06:32 shared
[2025-12-13 08:11:52] -rw-r--r-- 2 boincer umatlas    592390 Dec 13 06:32 input.tar.gz
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas         0 Dec 13 06:32 boinc_lockfile
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas      2504 Dec 13 06:32 pandaJob.out
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas        57 Dec 13 06:32 setup.sh.local
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas    991728 Dec 13 06:32 agis_schedconf.cvmfs.json
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas   1516240 Dec 13 06:32 agis_ddmendpoints.agis.ALL.json
[2025-12-13 08:11:52] drwx------ 5 boincer umatlas      4096 Dec 13 06:32 pilot3
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 08:00 init_data.xml
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas 217647236 Dec 13 08:10 HITS.47898763._001335.pool.root.1
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas       529 Dec 13 08:10 boinc_task_state.xml
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas      1047 Dec 13 08:10 memory_monitor_summary.json
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas    397979 Dec 13 08:10 log.47898763._001335.job.log.tgz.1
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas      7848 Dec 13 08:10 heartbeat.json
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas        95 Dec 13 08:11 pilot_heartbeat.json
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 08:11 boinc_mmap_file
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas        27 Dec 13 08:11 wrapper_checkpoint.txt
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas      4818 Dec 13 08:11 pilotlog.txt
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas    837880 Dec 13 08:11 log.47898763._001335.job.log.1
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas       357 Dec 13 08:11 output.list
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas       620 Dec 13 08:11 runtime_log
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas   1259520 Dec 13 08:11 result.tar.gz
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas      9339 Dec 13 08:11 runtime_log.err
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas       658 Dec 13 08:11 d18LDmH9ao8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPdSKDmWtZRXm.diag
[2025-12-13 08:11:52] -rw-r--r-- 1 boincer umatlas     22514 Dec 13 08:11 stderr.txt
[2025-12-13 08:11:52] HITS file was successfully produced:
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas 217647236 Dec 13 08:10 shared/HITS.pool.root.1
[2025-12-13 08:11:52]  *** Contents of shared directory: ***
[2025-12-13 08:11:52] total 431212
[2025-12-13 08:11:52] -rw-r--r-- 2 boincer umatlas 222033861 Dec 13 06:32 ATLAS.root_0
[2025-12-13 08:11:52] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 06:32 start_atlas.sh
[2025-12-13 08:11:52] -rw-r--r-- 2 boincer umatlas    592390 Dec 13 06:32 input.tar.gz
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas 217647236 Dec 13 08:10 HITS.pool.root.1
[2025-12-13 08:11:52] -rw------- 1 boincer umatlas   1259520 Dec 13 08:11 result.tar.gz
08:11:54 (22199): run_atlas exited; CPU time 64438.024646
08:11:54 (22199): called boinc_finish(0)

</stderr_txt>
]]>

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