Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:02:24 (1370396): wrapper (7.7.26015): starting
10:02:24 (1370396): wrapper: running run_atlas (--nthreads 9)
[2025-12-13 10:02:24] Arguments: --nthreads 9
[2025-12-13 10:02:24] Threads: 9
[2025-12-13 10:02:24] Checking for CVMFS
[2025-12-13 10:02:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 10:02:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 10:02:25] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 10:02:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 10:02:26] 2.13.3.0 13172 54685 377096 153963 3 325 25006835 32935937 38287 16776704 0 280705982 99.464 369082391 34209 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 10:02:26] CVMFS is ok
[2025-12-13 10:02:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 10:02:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 10:02:26] Further information can be found at the LHC@home message board.
[2025-12-13 10:02:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 10:02:26] Checking for apptainer binary...
[2025-12-13 10:02:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 10:02:26] Running /usr/bin/apptainer --version
[2025-12-13 10:02:26] apptainer version 1.4.5-2.el9
[2025-12-13 10:02:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 10:02:48] c6-6-8-3.aglt2.org
[2025-12-13 10:02:48] apptainer works
[2025-12-13 10:02:48] Set ATHENA_PROC_NUMBER=9
[2025-12-13 10:02:48] Set ATHENA_CORE_NUMBER=9
[2025-12-13 10:02:48] Starting ATLAS job with PandaID=6929263348
[2025-12-13 10:02:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 13:52:29]  *** The last 200 lines of the pilot log: ***
[2025-12-13 13:52:29] 2025-12-13 18:51:44,088 | INFO     | monitor loop #806: job 0:6929263348 is in state 'finished'
[2025-12-13 13:52:29] 2025-12-13 18:51:44,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 13:52:29] 2025-12-13 18:51:44,586 | INFO     | time since job start (13666s) is within the limit (174528.0s)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,593 | INFO     | time since job start (13668s) is within the limit (174528.0s)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,607 | INFO     | monitor loop #807: job 0:6929263348 is in state 'finished'
[2025-12-13 13:52:29] 2025-12-13 18:51:46,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,768 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 13:52:29] 2025-12-13 18:51:46,792 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2747.2421979166666
[2025-12-13 13:52:29] 2025-12-13 18:51:46,808 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6929263348/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,809 | INFO     | extracted standard info from prmon json
[2025-12-13 13:52:29] 2025-12-13 18:51:46,809 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 13:52:29] 2025-12-13 18:51:46,809 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 13:52:29] 2025-12-13 18:51:46,809 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 13:52:29] 2025-12-13 18:51:46,809 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 13:52:29] 2025-12-13 18:51:46,814 | INFO     | fitting pss+swap vs Time
[2025-12-13 13:52:29] 2025-12-13 18:51:46,814 | INFO     | sum of square deviations: 3392760186.594593
[2025-12-13 13:52:29] 2025-12-13 18:51:46,816 | INFO     | sum of deviations: 51342295907.45944
[2025-12-13 13:52:29] 2025-12-13 18:51:46,816 | INFO     | mean x: 1765645126.3513513
[2025-12-13 13:52:29] 2025-12-13 18:51:46,816 | INFO     | mean y: 2514377.635135135
[2025-12-13 13:52:29] 2025-12-13 18:51:46,816 | INFO     | intersect: -26716814298.43167
[2025-12-13 13:52:29] 2025-12-13 18:51:46,817 | INFO     | chi2: 3.9412331685994744
[2025-12-13 13:52:29] 2025-12-13 18:51:46,817 | INFO     | sum of square deviations: 3168684095.8525395
[2025-12-13 13:52:29] 2025-12-13 18:51:46,819 | INFO     | sum of deviations: 65360843989.755714
[2025-12-13 13:52:29] 2025-12-13 18:51:46,819 | INFO     | mean x: 1765644973.861751
[2025-12-13 13:52:29] 2025-12-13 18:51:46,819 | INFO     | mean y: 2523730.9585253457
[2025-12-13 13:52:29] 2025-12-13 18:51:46,819 | INFO     | intersect: -36417656440.6545
[2025-12-13 13:52:29] 2025-12-13 18:51:46,819 | INFO     | chi2: 3.179511735808587
[2025-12-13 13:52:29] 2025-12-13 18:51:46,819 | INFO     | current chi2=3.179511735808587 (change=19.326982195817827 %)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,820 | INFO     | right removable region: 216
[2025-12-13 13:52:29] 2025-12-13 18:51:46,820 | INFO     | sum of square deviations: 3168596010.387078
[2025-12-13 13:52:29] 2025-12-13 18:51:46,822 | INFO     | sum of deviations: -9931152568.870964
[2025-12-13 13:52:29] 2025-12-13 18:51:46,822 | INFO     | mean x: 1765645278.8709676
[2025-12-13 13:52:29] 2025-12-13 18:51:46,822 | INFO     | mean y: 2555942.004608295
[2025-12-13 13:52:29] 2025-12-13 18:51:46,822 | INFO     | intersect: 5536518804.260509
[2025-12-13 13:52:29] 2025-12-13 18:51:46,822 | INFO     | chi2: 1.0666114154738222
[2025-12-13 13:52:29] 2025-12-13 18:51:46,823 | INFO     | current chi2=1.0666114154738222 (change=72.93711460738454 %)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,823 | INFO     | sum of square deviations: 2954538284.283021
[2025-12-13 13:52:29] 2025-12-13 18:51:46,824 | INFO     | sum of deviations: -24577065417.839622
[2025-12-13 13:52:29] 2025-12-13 18:51:46,825 | INFO     | mean x: 1765645431.3867924
[2025-12-13 13:52:29] 2025-12-13 18:51:46,825 | INFO     | mean y: 2566358.4858490564
[2025-12-13 13:52:29] 2025-12-13 18:51:46,825 | INFO     | intersect: 14689931725.43468
[2025-12-13 13:52:29] 2025-12-13 18:51:46,825 | INFO     | chi2: 0.8834290849177601
[2025-12-13 13:52:29] 2025-12-13 18:51:46,825 | INFO     | current chi2=0.8834290849177601 (change=17.174233080440718 %)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,825 | INFO     | left removable region: 20
[2025-12-13 13:52:29] 2025-12-13 18:51:46,826 | INFO     | sum of square deviations: 2334755276.382654
[2025-12-13 13:52:29] 2025-12-13 18:51:46,827 | INFO     | sum of deviations: -16154524015.326534
[2025-12-13 13:52:29] 2025-12-13 18:51:46,827 | INFO     | mean x: 1765645553.4438775
[2025-12-13 13:52:29] 2025-12-13 18:51:46,827 | INFO     | mean y: 2582757.06122449
[2025-12-13 13:52:29] 2025-12-13 18:51:46,827 | INFO     | intersect: 12219350734.498201
[2025-12-13 13:52:29] 2025-12-13 18:51:46,827 | INFO     | chi2: 0.01718296139621122
[2025-12-13 13:52:29] 2025-12-13 18:51:46,828 | INFO     | current memory leak: -6.92 B/s (using 196 data points, chi2=0.02)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,828 | INFO     | could have reported an average CPU frequency of 2714 MHz (11 samples)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,828 | INFO     | ..............................
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | . Timing measurements:
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | . get job = 0 s
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | . initial setup = 7 s
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | . payload setup = 44 s
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | . stage-in = 0 s
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | . payload execution = 13528 s
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | . stage-out = 4 s
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | . log creation = 0 s
[2025-12-13 13:52:29] 2025-12-13 18:51:46,829 | INFO     | ..............................
[2025-12-13 13:52:29] 2025-12-13 18:51:46,933 | INFO     | 
[2025-12-13 13:52:29] 2025-12-13 18:51:46,933 | INFO     | job summary report
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | --------------------------------------------------
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | PanDA job id: 6929263348
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | task id: 47898763
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | errors: (none)
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | pilot state: finished 
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | transexitcode: 0
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | exeerrorcode: 0
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | exeerrordiag: 
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | exitcode: 0
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | exitmsg: OK
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | cpuconsumptiontime: 61456 s
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | nevents: 400
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | neventsw: 0
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | pid: 1386667
[2025-12-13 13:52:29] 2025-12-13 18:51:46,934 | INFO     | pgrp: 1386667
[2025-12-13 13:52:29] 2025-12-13 18:51:46,935 | INFO     | corecount: 9
[2025-12-13 13:52:29] 2025-12-13 18:51:46,935 | INFO     | event service: False
[2025-12-13 13:52:29] 2025-12-13 18:51:46,935 | INFO     | sizes: {0: 2283724, 1: 2283808, 2: 2283979, 13: 2284007, 24: 2284063, 31: 2284353, 35: 2284509, 13577: 2314560, 13581: 2323558, 13584: 2323614, 13603: 2323808}
[2025-12-13 13:52:29] 2025-12-13 18:51:46,935 | INFO     | --------------------------------------------------
[2025-12-13 13:52:29] 2025-12-13 18:51:46,935 | INFO     | 
[2025-12-13 13:52:29] 2025-12-13 18:51:46,935 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 13:52:29] 2025-12-13 18:51:47,064 | INFO     | job 6929263348 has completed (purged errors)
[2025-12-13 13:52:29] 2025-12-13 18:51:47,065 | INFO     | overall cleanup function is called
[2025-12-13 13:52:29] 2025-12-13 18:51:48,083 | INFO     | --- collectZombieJob: --- 10, [1386667]
[2025-12-13 13:52:29] 2025-12-13 18:51:48,083 | INFO     | zombie collector waiting for pid 1386667
[2025-12-13 13:52:29] 2025-12-13 18:51:48,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 13:52:29] 2025-12-13 18:51:48,084 | INFO     | collected zombie processes
[2025-12-13 13:52:29] 2025-12-13 18:51:48,084 | INFO     | will attempt to kill all subprocesses of pid=1386667
[2025-12-13 13:52:29] 2025-12-13 18:51:50,016 | INFO     | process IDs to be killed: [1386667] (in reverse order)
[2025-12-13 13:52:29] 2025-12-13 18:51:50,486 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 13:52:29] 2025-12-13 18:51:50,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 13:52:29] 2025-12-13 18:51:50,529 | INFO     | did not find any defunct processes belonging to 1386667
[2025-12-13 13:52:29] 2025-12-13 18:51:50,664 | INFO     | did not find any defunct processes belonging to 1386667
[2025-12-13 13:52:29] 2025-12-13 18:51:50,664 | INFO     | ready for new job
[2025-12-13 13:52:29] 2025-12-13 18:51:50,664 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 13:52:29] 2025-12-13 18:51:50,667 | INFO     | ***************************************
[2025-12-13 13:52:29] 2025-12-13 18:51:50,667 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 13:52:29] 2025-12-13 18:51:50,667 | INFO     | ***************************************
[2025-12-13 13:52:29] 2025-12-13 18:51:50,667 | INFO     | 
[2025-12-13 13:52:29] 2025-12-13 18:51:50,692 | INFO     | architecture information:
[2025-12-13 13:52:29] 2025-12-13 18:51:50,696 | INFO     | executing command: cat /etc/os-release
[2025-12-13 13:52:29] 2025-12-13 18:51:50,760 | INFO     | cat /etc/os-release:
[2025-12-13 13:52:29] NAME="CentOS Linux"
[2025-12-13 13:52:29] VERSION="7 (Core)"
[2025-12-13 13:52:29] ID="centos"
[2025-12-13 13:52:29] ID_LIKE="rhel fedora"
[2025-12-13 13:52:29] VERSION_ID="7"
[2025-12-13 13:52:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 13:52:29] ANSI_COLOR="0;31"
[2025-12-13 13:52:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 13:52:29] HOME_URL="https://www.centos.org/"
[2025-12-13 13:52:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 13:52:29] 
[2025-12-13 13:52:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 13:52:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 13:52:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 13:52:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 13:52:29] 
[2025-12-13 13:52:29] 2025-12-13 18:51:50,761 | INFO     | ***************************************
[2025-12-13 13:52:29] 2025-12-13 18:51:51,264 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-13 13:52:29] 2025-12-13 18:51:51,324 | INFO     | sufficient remaining disk space (94183096320 B)
[2025-12-13 13:52:29] 2025-12-13 18:51:51,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 13:52:29] 2025-12-13 18:51:51,324 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 13:52:29] 2025-12-13 18:51:51,324 | INFO     | update_server=False
[2025-12-13 13:52:29] 2025-12-13 18:51:51,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 13:52:29] 2025-12-13 18:51:51,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 13:52:29] 2025-12-13 18:51:51,649 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-13 13:52:29] 2025-12-13 18:51:51,650 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-13 13:52:29] 2025-12-13 18:51:51,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 13:52:29] 2025-12-13 18:51:51,650 | INFO     | will abort loop
[2025-12-13 13:52:29] 2025-12-13 18:51:51,788 | INFO     | all job control threads have been joined
[2025-12-13 13:52:29] 2025-12-13 18:51:51,931 | INFO     | all data control threads have been joined
[2025-12-13 13:52:29] 2025-12-13 18:51:51,951 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 13:52:29] 2025-12-13 18:51:52,330 | INFO     | [job] retrieve thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:52,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 13:52:29] 2025-12-13 18:51:52,524 | INFO     | [payload] failed_post thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:52,549 | INFO     | all payload control threads have been joined
[2025-12-13 13:52:29] 2025-12-13 18:51:52,655 | INFO     | [job] job monitor thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:52,794 | INFO     | [job] control thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:52,927 | INFO     | [payload] validate_post thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:52,937 | INFO     | [data] control thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:52,957 | INFO     | [job] queue monitor thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:53,015 | INFO     | [data] copytool_in thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:53,176 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:53,187 | INFO     | [job] validate thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:53,332 | INFO     | [data] copytool_out thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:53,501 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:53,555 | INFO     | [payload] control thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:53,786 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:51:56,542 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:52:01,418 | INFO     | job.realtimelogging is not enabled
[2025-12-13 13:52:29] 2025-12-13 18:52:02,424 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 13:52:29] 2025-12-13 18:52:20,683 | INFO     | PID=1375739 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 13:52:29] 2025-12-13 18:52:20,683 | INFO     | .. there are 44 such processes running
[2025-12-13 13:52:29] 2025-12-13 18:52:20,683 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 13:52:29] 2025-12-13 18:52:20,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 13:52:29] 2025-12-13 18:52:20,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 13:52:29] 2025-12-13 18:52:22,199 | INFO     | [monitor] cgroup control has ended
[2025-12-13 13:52:29] 2025-12-13 18:52:22,707 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140425088554816)>', '<ExcThread(monitor, started 140424593258240)>']
[2025-12-13 13:52:29] 2025-12-13 18:52:23,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 13:52:29] 2025-12-13 18:52:23,701 | INFO     | [monitor] control thread has ended
[2025-12-13 13:52:29] 2025-12-13 18:52:27,733 | INFO     | all workflow threads have been joined
[2025-12-13 13:52:29] 2025-12-13 18:52:27,734 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 13:52:29] 2025-12-13 18:52:27,734 | INFO     | traces error code: 0
[2025-12-13 13:52:29] 2025-12-13 18:52:27,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 13:52:29] 2025-12-13 18:52:28,455 [wrapper] ==== pilot stdout END ====
[2025-12-13 13:52:29] 2025-12-13 18:52:28,469 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 13:52:29] 2025-12-13 18:52:28,491 [wrapper] pilotpid: 1375739
[2025-12-13 13:52:29] 2025-12-13 18:52:28,522 [wrapper] Pilot exit status: 0
[2025-12-13 13:52:29] 2025-12-13 18:52:28,640 [wrapper] pandaids: 6929263348
[2025-12-13 13:52:29] 2025-12-13 18:52:28,960 [wrapper] cleanup supervisor_pilot 2267344 1375740
[2025-12-13 13:52:29] 2025-12-13 18:52:28,972 [wrapper] Test setup, not cleaning
[2025-12-13 13:52:29] 2025-12-13 18:52:28,988 [wrapper] apfmon messages muted
[2025-12-13 13:52:29] 2025-12-13 18:52:29,037 [wrapper] ==== wrapper stdout END ====
[2025-12-13 13:52:29] 2025-12-13 18:52:29,063 [wrapper] ==== wrapper stderr END ====
[2025-12-13 13:52:29]  *** Error codes and diagnostics ***
[2025-12-13 13:52:29]     "exeErrorCode": 0,
[2025-12-13 13:52:29]     "exeErrorDiag": "",
[2025-12-13 13:52:29]     "pilotErrorCode": 0,
[2025-12-13 13:52:29]     "pilotErrorDiag": "",
[2025-12-13 13:52:29]  *** Listing of results directory ***
[2025-12-13 13:52:29] total 441960
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 13:52:29] -rwx------. 1 boincer umatlas     36322 Dec 13 04:31 runpilot2-wrapper.sh
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 04:31 queuedata.json
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas       100 Dec 13 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 13:52:29] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 10:02 run_atlas
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas       105 Dec 13 10:02 job.xml
[2025-12-13 13:52:29] -rw-r--r--. 2 boincer umatlas 222411056 Dec 13 10:02 EVNT.47898761._000057.pool.root.1
[2025-12-13 13:52:29] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 10:02 start_atlas.sh
[2025-12-13 13:52:29] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 10:02 shared
[2025-12-13 13:52:29] -rw-r--r--. 2 boincer umatlas    592388 Dec 13 10:02 input.tar.gz
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas         0 Dec 13 10:02 boinc_lockfile
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas      2504 Dec 13 10:02 pandaJob.out
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas        57 Dec 13 10:02 setup.sh.local
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas    991736 Dec 13 10:03 agis_schedconf.cvmfs.json
[2025-12-13 13:52:29] drwx------. 5 boincer umatlas      4096 Dec 13 10:03 pilot3
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas      6878 Dec 13 13:49 init_data.xml
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas 221956494 Dec 13 13:50 HITS.47898763._001415.pool.root.1
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas       531 Dec 13 13:50 boinc_task_state.xml
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas      1043 Dec 13 13:51 memory_monitor_summary.json
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas   1516240 Dec 13 13:51 agis_ddmendpoints.agis.ALL.json
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas    456636 Dec 13 13:51 log.47898763._001415.job.log.tgz.1
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas        95 Dec 13 13:51 pilot_heartbeat.json
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas      7825 Dec 13 13:51 heartbeat.json
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 13:52 boinc_mmap_file
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas        28 Dec 13 13:52 wrapper_checkpoint.txt
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas      5082 Dec 13 13:52 pilotlog.txt
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas   1680594 Dec 13 13:52 log.47898763._001415.job.log.1
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas       357 Dec 13 13:52 output.list
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas       620 Dec 13 13:52 runtime_log
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas   2160640 Dec 13 13:52 result.tar.gz
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas      9343 Dec 13 13:52 runtime_log.err
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas       656 Dec 13 13:52 pmGMDmR9ao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCYOKDmlc3B5n.diag
[2025-12-13 13:52:29] -rw-r--r--. 1 boincer umatlas     21398 Dec 13 13:52 stderr.txt
[2025-12-13 13:52:29] HITS file was successfully produced:
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas 221956494 Dec 13 13:50 shared/HITS.pool.root.1
[2025-12-13 13:52:29]  *** Contents of shared directory: ***
[2025-12-13 13:52:29] total 436668
[2025-12-13 13:52:29] -rw-r--r--. 2 boincer umatlas 222411056 Dec 13 10:02 ATLAS.root_0
[2025-12-13 13:52:29] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 10:02 start_atlas.sh
[2025-12-13 13:52:29] -rw-r--r--. 2 boincer umatlas    592388 Dec 13 10:02 input.tar.gz
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas 221956494 Dec 13 13:50 HITS.pool.root.1
[2025-12-13 13:52:29] -rw-------. 1 boincer umatlas   2160640 Dec 13 13:52 result.tar.gz
13:52:30 (1370396): run_atlas exited; CPU time 62140.963337
13:52:30 (1370396): called boinc_finish(0)

</stderr_txt>
]]>

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