Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:37:04 (638127): wrapper (7.7.26015): starting
06:37:04 (638127): wrapper: running run_atlas (--nthreads 9)
[2025-12-13 06:37:04] Arguments: --nthreads 9
[2025-12-13 06:37:04] Threads: 9
[2025-12-13 06:37:04] Checking for CVMFS
[2025-12-13 06:37:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 06:37:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 06:37:04] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 06:37:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 06:37:06] 2.13.3.0 13172 54480 391248 153959 0 535 20729741 32935937 36188 16776704 0 279936755 99.466 367963215 34247 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-13 06:37:06] CVMFS is ok
[2025-12-13 06:37:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 06:37:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 06:37:06] Further information can be found at the LHC@home message board.
[2025-12-13 06:37:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 06:37:06] Checking for apptainer binary...
[2025-12-13 06:37:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 06:37:06] Running /usr/bin/apptainer --version
[2025-12-13 06:37:07] apptainer version 1.4.5-2.el9
[2025-12-13 06:37:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 06:37:08] c6-6-8-3.aglt2.org
[2025-12-13 06:37:08] apptainer works
[2025-12-13 06:37:08] Set ATHENA_PROC_NUMBER=9
[2025-12-13 06:37:08] Set ATHENA_CORE_NUMBER=9
[2025-12-13 06:37:08] Starting ATLAS job with PandaID=6929263087
[2025-12-13 06:37:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 16:14:29]  *** The last 200 lines of the pilot log: ***
[2025-12-13 16:14:29] 2025-12-13 21:13:44,928 | INFO     | time since job start (34536s) is within the limit (174528.0s)
[2025-12-13 16:14:29] 2025-12-13 21:13:46,481 | INFO     | monitor loop #1803: job 0:6929263087 is in state 'finished'
[2025-12-13 16:14:29] 2025-12-13 21:13:46,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:14:29] 2025-12-13 21:13:46,938 | INFO     | time since job start (34538s) is within the limit (174528.0s)
[2025-12-13 16:14:29] 2025-12-13 21:13:48,945 | INFO     | time since job start (34540s) is within the limit (174528.0s)
[2025-12-13 16:14:29] 2025-12-13 21:13:48,986 | INFO     | monitor loop #1804: job 0:6929263087 is in state 'finished'
[2025-12-13 16:14:29] 2025-12-13 21:13:48,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 16:14:29] 2025-12-13 21:13:49,824 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 16:14:29] 2025-12-13 21:13:49,877 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2708.64975
[2025-12-13 16:14:29] 2025-12-13 21:13:49,908 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929263087/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 16:14:29] 2025-12-13 21:13:49,913 | INFO     | extracted standard info from prmon json
[2025-12-13 16:14:29] 2025-12-13 21:13:49,914 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 16:14:29] 2025-12-13 21:13:49,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 16:14:29] 2025-12-13 21:13:49,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 16:14:29] 2025-12-13 21:13:49,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 16:14:29] 2025-12-13 21:13:49,934 | INFO     | fitting pss+swap vs Time
[2025-12-13 16:14:29] 2025-12-13 21:13:49,934 | INFO     | sum of square deviations: 55630628029.91466
[2025-12-13 16:14:29] 2025-12-13 21:13:49,948 | INFO     | sum of deviations: 271957661731.55307
[2025-12-13 16:14:29] 2025-12-13 21:13:49,948 | INFO     | mean x: 1765643196.0851064
[2025-12-13 16:14:29] 2025-12-13 21:13:49,948 | INFO     | mean y: 2535972.280141844
[2025-12-13 16:14:29] 2025-12-13 21:13:49,948 | INFO     | intersect: -8629043646.079025
[2025-12-13 16:14:29] 2025-12-13 21:13:49,949 | INFO     | chi2: 4.100401389271585
[2025-12-13 16:14:29] 2025-12-13 21:13:49,954 | INFO     | sum of square deviations: 54164229569.36664
[2025-12-13 16:14:29] 2025-12-13 21:13:49,965 | INFO     | sum of deviations: 305500950622.21625
[2025-12-13 16:14:29] 2025-12-13 21:13:49,965 | INFO     | mean x: 1765643043.588551
[2025-12-13 16:14:29] 2025-12-13 21:13:49,965 | INFO     | mean y: 2539433.4400715563
[2025-12-13 16:14:29] 2025-12-13 21:13:49,966 | INFO     | intersect: -9956166387.068344
[2025-12-13 16:14:29] 2025-12-13 21:13:49,970 | INFO     | chi2: 3.4135443597903694
[2025-12-13 16:14:29] 2025-12-13 21:13:49,971 | INFO     | current chi2=3.4135443597903694 (change=16.75097055810998 %)
[2025-12-13 16:14:29] 2025-12-13 21:13:49,971 | INFO     | right removable region: 558
[2025-12-13 16:14:29] 2025-12-13 21:13:49,972 | INFO     | sum of square deviations: 54164096833.36662
[2025-12-13 16:14:29] 2025-12-13 21:13:49,995 | INFO     | sum of deviations: 105994574112.84802
[2025-12-13 16:14:29] 2025-12-13 21:13:50,002 | INFO     | mean x: 1765643348.588551
[2025-12-13 16:14:29] 2025-12-13 21:13:50,003 | INFO     | mean y: 2553213.1949910554
[2025-12-13 16:14:29] 2025-12-13 21:13:50,003 | INFO     | intersect: -3452662062.4253244
[2025-12-13 16:14:29] 2025-12-13 21:13:50,004 | INFO     | chi2: 1.0454475855519187
[2025-12-13 16:14:29] 2025-12-13 21:13:50,004 | INFO     | current chi2=1.0454475855519187 (change=74.50377447712168 %)
[2025-12-13 16:14:29] 2025-12-13 21:13:50,004 | INFO     | sum of square deviations: 52723532269.11917
[2025-12-13 16:14:29] 2025-12-13 21:13:50,029 | INFO     | sum of deviations: 57139720479.960304
[2025-12-13 16:14:29] 2025-12-13 21:13:50,030 | INFO     | mean x: 1765643501.0938628
[2025-12-13 16:14:29] 2025-12-13 21:13:50,030 | INFO     | mean y: 2558382.1353790616
[2025-12-13 16:14:29] 2025-12-13 21:13:50,030 | INFO     | intersect: -1910977600.3324225
[2025-12-13 16:14:29] 2025-12-13 21:13:50,030 | INFO     | chi2: 0.80703684771337
[2025-12-13 16:14:29] 2025-12-13 21:13:50,031 | INFO     | current chi2=0.80703684771337 (change=22.80465717587224 %)
[2025-12-13 16:14:29] 2025-12-13 21:13:50,031 | INFO     | left removable region: 20
[2025-12-13 16:14:29] 2025-12-13 21:13:50,031 | INFO     | sum of square deviations: 48286014490.96107
[2025-12-13 16:14:29] 2025-12-13 21:13:50,054 | INFO     | sum of deviations: 54764172250.94241
[2025-12-13 16:14:29] 2025-12-13 21:13:50,056 | INFO     | mean x: 1765643623.105948
[2025-12-13 16:14:29] 2025-12-13 21:13:50,057 | INFO     | mean y: 2566161.2992565054
[2025-12-13 16:14:29] 2025-12-13 21:13:50,057 | INFO     | intersect: -1999960088.3594904
[2025-12-13 16:14:29] 2025-12-13 21:13:50,058 | INFO     | chi2: 0.010618776285711022
[2025-12-13 16:14:29] 2025-12-13 21:13:50,058 | INFO     | current memory leak: 1.13 B/s (using 538 data points, chi2=0.01)
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | could have reported an average CPU frequency of 2716 MHz (22 samples)
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | ..............................
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | . Timing measurements:
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | . get job = 0 s
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | . initial setup = 6 s
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | . payload setup = 40 s
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | . stage-in = 0 s
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | . payload execution = 34386 s
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | . stage-out = 4 s
[2025-12-13 16:14:29] 2025-12-13 21:13:50,059 | INFO     | . log creation = 0 s
[2025-12-13 16:14:29] 2025-12-13 21:13:50,060 | INFO     | ..............................
[2025-12-13 16:14:29] 2025-12-13 21:13:51,191 | INFO     | 
[2025-12-13 16:14:29] 2025-12-13 21:13:51,191 | INFO     | job summary report
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | --------------------------------------------------
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | PanDA job id: 6929263087
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | task id: 47898763
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | errors: (none)
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | pilot state: finished 
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | transexitcode: 0
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | exeerrorcode: 0
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | exeerrordiag: 
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | exitcode: 0
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | exitmsg: OK
[2025-12-13 16:14:29] 2025-12-13 21:13:51,192 | INFO     | cpuconsumptiontime: 63375 s
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | nevents: 400
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | neventsw: 0
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | pid: 662757
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | pgrp: 662757
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | corecount: 9
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | event service: False
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | sizes: {0: 2283724, 1: 2283808, 2: 2284007, 3: 2284007, 14: 2284035, 25: 2284063, 31: 2284481, 36: 2284509, 34431: 2324159, 34437: 2333157, 34441: 2333241, 34474: 
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | --------------------------------------------------
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | 
[2025-12-13 16:14:29] 2025-12-13 21:13:51,193 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 16:14:29] 2025-12-13 21:13:51,326 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,326 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,326 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,326 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,326 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,326 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,326 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,326 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 16:14:29] 2025-12-13 21:13:51,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,328 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 16:14:29] 2025-12-13 21:13:51,328 | INFO     | job 6929263087 has completed (purged errors)
[2025-12-13 16:14:29] 2025-12-13 21:13:51,328 | INFO     | overall cleanup function is called
[2025-12-13 16:14:29] 2025-12-13 21:13:52,358 | INFO     | --- collectZombieJob: --- 10, [662757]
[2025-12-13 16:14:29] 2025-12-13 21:13:52,360 | INFO     | zombie collector waiting for pid 662757
[2025-12-13 16:14:29] 2025-12-13 21:13:52,360 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 16:14:29] 2025-12-13 21:13:52,360 | INFO     | collected zombie processes
[2025-12-13 16:14:29] 2025-12-13 21:13:52,360 | INFO     | will attempt to kill all subprocesses of pid=662757
[2025-12-13 16:14:29] 2025-12-13 21:13:52,653 | INFO     | PID=644581 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 16:14:29] 2025-12-13 21:13:52,653 | INFO     | .. there are 43 such processes running
[2025-12-13 16:14:29] 2025-12-13 21:13:53,549 | INFO     | process IDs to be killed: [662757] (in reverse order)
[2025-12-13 16:14:29] 2025-12-13 21:13:53,877 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 16:14:29] 2025-12-13 21:13:53,877 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 16:14:29] 2025-12-13 21:13:53,900 | INFO     | did not find any defunct processes belonging to 662757
[2025-12-13 16:14:29] 2025-12-13 21:13:53,938 | INFO     | did not find any defunct processes belonging to 662757
[2025-12-13 16:14:29] 2025-12-13 21:13:53,938 | INFO     | ready for new job
[2025-12-13 16:14:29] 2025-12-13 21:13:53,939 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 16:14:29] 2025-12-13 21:13:53,942 | INFO     | ***************************************
[2025-12-13 16:14:29] 2025-12-13 21:13:53,942 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 16:14:29] 2025-12-13 21:13:53,942 | INFO     | ***************************************
[2025-12-13 16:14:29] 2025-12-13 21:13:53,942 | INFO     | 
[2025-12-13 16:14:29] 2025-12-13 21:13:53,980 | INFO     | architecture information:
[2025-12-13 16:14:29] 2025-12-13 21:13:53,988 | INFO     | executing command: cat /etc/os-release
[2025-12-13 16:14:29] 2025-12-13 21:13:54,083 | INFO     | cat /etc/os-release:
[2025-12-13 16:14:29] NAME="CentOS Linux"
[2025-12-13 16:14:29] VERSION="7 (Core)"
[2025-12-13 16:14:29] ID="centos"
[2025-12-13 16:14:29] ID_LIKE="rhel fedora"
[2025-12-13 16:14:29] VERSION_ID="7"
[2025-12-13 16:14:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 16:14:29] ANSI_COLOR="0;31"
[2025-12-13 16:14:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 16:14:29] HOME_URL="https://www.centos.org/"
[2025-12-13 16:14:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 16:14:29] 
[2025-12-13 16:14:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 16:14:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 16:14:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 16:14:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 16:14:29] 
[2025-12-13 16:14:29] 2025-12-13 21:13:54,083 | INFO     | ***************************************
[2025-12-13 16:14:29] 2025-12-13 21:13:54,595 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 16:14:29] 2025-12-13 21:13:54,688 | INFO     | sufficient remaining disk space (94610915328 B)
[2025-12-13 16:14:29] 2025-12-13 21:13:54,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 16:14:29] 2025-12-13 21:13:54,688 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 16:14:29] 2025-12-13 21:13:54,689 | INFO     | update_server=False
[2025-12-13 16:14:29] 2025-12-13 21:13:54,689 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 16:14:29] 2025-12-13 21:13:54,717 | INFO     | all job control threads have been joined
[2025-12-13 16:14:29] 2025-12-13 21:13:55,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:14:29] 2025-12-13 21:13:55,065 | INFO     | aborting loop
[2025-12-13 16:14:29] 2025-12-13 21:13:55,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 16:14:29] 2025-12-13 21:13:55,239 | INFO     | all data control threads have been joined
[2025-12-13 16:14:29] 2025-12-13 21:13:55,453 | INFO     | all payload control threads have been joined
[2025-12-13 16:14:29] 2025-12-13 21:13:55,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 16:14:29] 2025-12-13 21:13:55,694 | INFO     | [job] retrieve thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:55,725 | INFO     | [job] control thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:55,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:14:29] 2025-12-13 21:13:56,070 | INFO     | [job] job monitor thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,175 | INFO     | [payload] validate_post thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,253 | INFO     | [data] control thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,285 | INFO     | [job] validate thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,465 | INFO     | [payload] control thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,784 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,819 | INFO     | [job] queue monitor thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,908 | INFO     | [payload] failed_post thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,960 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:56,961 | INFO     | [data] copytool_in thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:57,075 | INFO     | [data] copytool_out thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:57,102 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:57,157 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:13:59,510 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 16:14:29] 2025-12-13 21:14:11,155 | INFO     | [monitor] cgroup control has ended
[2025-12-13 16:14:29] 2025-12-13 21:14:12,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639045699392)>', '<ExcThread(monitor, started 140637949122304)>']
[2025-12-13 16:14:29] 2025-12-13 21:14:17,575 | INFO     | all workflow threads have been joined
[2025-12-13 16:14:29] 2025-12-13 21:14:17,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 16:14:29] 2025-12-13 21:14:17,580 | INFO     | traces error code: 0
[2025-12-13 16:14:29] 2025-12-13 21:14:17,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 16:14:29] 2025-12-13 21:14:26,919 | INFO     | PID=644581 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 16:14:29] 2025-12-13 21:14:26,938 | INFO     | .. there are 43 such processes running
[2025-12-13 16:14:29] 2025-12-13 21:14:26,938 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 16:14:29] 2025-12-13 21:14:26,938 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 16:14:29] 2025-12-13 21:14:26,938 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 16:14:29] 2025-12-13 21:14:26,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 16:14:29] 2025-12-13 21:14:26,938 | INFO     | [monitor] control thread has ended
[2025-12-13 16:14:29] 2025-12-13 21:14:27,677 [wrapper] ==== pilot stdout END ====
[2025-12-13 16:14:29] 2025-12-13 21:14:27,710 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 16:14:29] 2025-12-13 21:14:27,740 [wrapper] pilotpid: 644581
[2025-12-13 16:14:29] 2025-12-13 21:14:27,755 [wrapper] Pilot exit status: 0
[2025-12-13 16:14:29] 2025-12-13 21:14:27,844 [wrapper] pandaids: 6929263087
[2025-12-13 16:14:29] 2025-12-13 21:14:28,484 [wrapper] cleanup supervisor_pilot 2824710 644582
[2025-12-13 16:14:29] 2025-12-13 21:14:28,500 [wrapper] Test setup, not cleaning
[2025-12-13 16:14:29] 2025-12-13 21:14:28,521 [wrapper] apfmon messages muted
[2025-12-13 16:14:29] 2025-12-13 21:14:28,570 [wrapper] ==== wrapper stdout END ====
[2025-12-13 16:14:29] 2025-12-13 21:14:28,585 [wrapper] ==== wrapper stderr END ====
[2025-12-13 16:14:29]  *** Error codes and diagnostics ***
[2025-12-13 16:14:29]     "exeErrorCode": 0,
[2025-12-13 16:14:29]     "exeErrorDiag": "",
[2025-12-13 16:14:29]     "pilotErrorCode": 0,
[2025-12-13 16:14:29]     "pilotErrorDiag": "",
[2025-12-13 16:14:29]  *** Listing of results directory ***
[2025-12-13 16:14:29] total 443540
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas    579449 Dec 13 03:51 pilot3.tar.gz
[2025-12-13 16:14:29] -rwx------. 1 boincer umatlas     36322 Dec 13 04:31 runpilot2-wrapper.sh
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas      5112 Dec 13 04:31 queuedata.json
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas       100 Dec 13 06:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 16:14:29] -rwxr-xr-x. 1 boincer umatlas      7986 Dec 13 06:37 run_atlas
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas       105 Dec 13 06:37 job.xml
[2025-12-13 16:14:29] -rw-r--r--. 2 boincer umatlas 223564055 Dec 13 06:37 EVNT.47898761._000047.pool.root.1
[2025-12-13 16:14:29] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 06:37 start_atlas.sh
[2025-12-13 16:14:29] drwxrwx--x. 2 boincer umatlas      4096 Dec 13 06:37 shared
[2025-12-13 16:14:29] -rw-r--r--. 2 boincer umatlas    592386 Dec 13 06:37 input.tar.gz
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas         0 Dec 13 06:37 boinc_lockfile
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas      2504 Dec 13 06:37 pandaJob.out
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas        57 Dec 13 06:37 setup.sh.local
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas    991728 Dec 13 06:38 agis_schedconf.cvmfs.json
[2025-12-13 16:14:29] drwx------. 5 boincer umatlas      4096 Dec 13 06:38 pilot3
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas 217421154 Dec 13 16:11 HITS.47898763._001154.pool.root.1
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas      6878 Dec 13 16:12 init_data.xml
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas       531 Dec 13 16:12 boinc_task_state.xml
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas      1041 Dec 13 16:13 memory_monitor_summary.json
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas   1516240 Dec 13 16:13 agis_ddmendpoints.agis.ALL.json
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas    690471 Dec 13 16:13 log.47898763._001154.job.log.tgz.1
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas      7818 Dec 13 16:13 heartbeat.json
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas        95 Dec 13 16:13 pilot_heartbeat.json
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas        28 Dec 13 16:14 wrapper_checkpoint.txt
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas      8192 Dec 13 16:14 boinc_mmap_file
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas       822 Dec 13 16:14 pilotlog.txt
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas   3946684 Dec 13 16:14 log.47898763._001154.job.log.1
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas       357 Dec 13 16:14 output.list
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas       620 Dec 13 16:14 runtime_log
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas   4659200 Dec 13 16:14 result.tar.gz
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas      9343 Dec 13 16:14 runtime_log.err
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas       658 Dec 13 16:14 Q5zLDmF9ao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMXOKDme5UYXn.diag
[2025-12-13 16:14:29] -rw-r--r--. 1 boincer umatlas     21501 Dec 13 16:14 stderr.txt
[2025-12-13 16:14:29] HITS file was successfully produced:
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas 217421154 Dec 13 16:11 shared/HITS.pool.root.1
[2025-12-13 16:14:29]  *** Contents of shared directory: ***
[2025-12-13 16:14:29] total 435812
[2025-12-13 16:14:29] -rw-r--r--. 2 boincer umatlas 223564055 Dec 13 06:37 ATLAS.root_0
[2025-12-13 16:14:29] -rw-r--r--. 2 boincer umatlas     15847 Dec 13 06:37 start_atlas.sh
[2025-12-13 16:14:29] -rw-r--r--. 2 boincer umatlas    592386 Dec 13 06:37 input.tar.gz
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas 217421154 Dec 13 16:11 HITS.pool.root.1
[2025-12-13 16:14:29] -rw-------. 1 boincer umatlas   4659200 Dec 13 16:14 result.tar.gz
16:14:30 (638127): run_atlas exited; CPU time 65230.790367
16:14:30 (638127): called boinc_finish(0)

</stderr_txt>
]]>

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