Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:35:40 (22141): wrapper (7.7.26015): starting
06:35:40 (22141): wrapper: running run_atlas (--nthreads 12)
[2025-12-13 06:35:40] Arguments: --nthreads 12
[2025-12-13 06:35:40] Threads: 12
[2025-12-13 06:35:40] Checking for CVMFS
[2025-12-13 06:35:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 06:35:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 06:35:41] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 06:35:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 06:35:41] 2.11.2.0 2998 127822 100412 153959 3 59 12872008 20275200 1 130560 0 52576025 99.954 5684980 35283 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 06:35:41] CVMFS is ok
[2025-12-13 06:35:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 06:35:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 06:35:41] Further information can be found at the LHC@home message board.
[2025-12-13 06:35:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 06:35:41] Checking for apptainer binary...
[2025-12-13 06:35:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 06:35:41] Running /usr/bin/apptainer --version
[2025-12-13 06:35:41] apptainer version 1.3.2-1.el7
[2025-12-13 06:35:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 06:35:42] c-205-12.aglt2.org
[2025-12-13 06:35:42] apptainer works
[2025-12-13 06:35:42] Set ATHENA_PROC_NUMBER=12
[2025-12-13 06:35:42] Set ATHENA_CORE_NUMBER=12
[2025-12-13 06:35:42] Starting ATLAS job with PandaID=6929158002
[2025-12-13 06:35:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 08:14:13]  *** The last 200 lines of the pilot log: ***
[2025-12-13 08:14:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-12-13 08:14:13]  replicas=None
[2025-12-13 08:14:13]  scope=mc23_13p6TeV
[2025-12-13 08:14:13]  status=None
[2025-12-13 08:14:13]  status_code=0
[2025-12-13 08:14:13]  storage_token=
[2025-12-13 08:14:13]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6929158002/log.47898763._000167.job.log.tgz.1
[2025-12-13 08:14:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/36/log.47898763._000167.job.log.tgz.1
[2025-12-13 08:14:13]  workdir=None
[2025-12-13 08:14:13] ]
[2025-12-13 08:14:13] 2025-12-13 13:13:08,621 | INFO     | transferring file log.47898763._000167.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6929158002/log.47898763._000167.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-12-13 08:14:13] 2025-12-13 13:13:08,621 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6929158002/log.47898763._000167.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898763._000167.job
[2025-12-13 08:14:13] 2025-12-13 13:13:08,643 | INFO     | adding to output.list: log.47898763._000167.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/36/log.47898763._000167.job.log.tg
[2025-12-13 08:14:13] 2025-12-13 13:13:08,644 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-12-13 08:14:13] 2025-12-13 13:13:08,644 | INFO     | summary of transferred files:
[2025-12-13 08:14:13] 2025-12-13 13:13:08,644 | INFO     |  -- lfn=log.47898763._000167.job.log.tgz.1, status_code=0, status=transferred
[2025-12-13 08:14:13] 2025-12-13 13:13:08,644 | INFO     | stage-out finished correctly
[2025-12-13 08:14:13] 2025-12-13 13:13:10,405 | INFO     | time since job start (5833s) is within the limit (174528.0s)
[2025-12-13 08:14:13] 2025-12-13 13:13:11,466 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-13 08:14:13] 2025-12-13 13:13:11,975 | INFO     | job 6929158002 has state=finished
[2025-12-13 08:14:13] 2025-12-13 13:13:11,975 | INFO     | preparing for final server update for job 6929158002 in state='finished'
[2025-12-13 08:14:13] 2025-12-13 13:13:11,976 | INFO     | this job has now completed (state=finished)
[2025-12-13 08:14:13] 2025-12-13 13:13:11,976 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-13 08:14:13] 2025-12-13 13:13:11,976 | INFO     | log transfer has been attempted: DONE
[2025-12-13 08:14:13] 2025-12-13 13:13:11,976 | INFO     | job 6929158002 has finished - writing final server update
[2025-12-13 08:14:13] 2025-12-13 13:13:11,977 | INFO     | total number of processed events: 400 (read)
[2025-12-13 08:14:13] 2025-12-13 13:13:11,978 | INFO     | executing command: lscpu
[2025-12-13 08:14:13] 2025-12-13 13:13:12,005 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-13 08:14:13] 2025-12-13 13:13:12,410 | INFO     | time since job start (5835s) is within the limit (174528.0s)
[2025-12-13 08:14:13] 2025-12-13 13:13:13,379 | WARNING  | process 32243 can no longer be monitored (due to stat problems) - aborting
[2025-12-13 08:14:13] 2025-12-13 13:13:13,379 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929158002/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 08:14:13] 2025-12-13 13:13:13,472 | INFO     | number of running child processes to parent process 32243: 1
[2025-12-13 08:14:13] 2025-12-13 13:13:13,472 | INFO     | maximum number of monitored processes: 6
[2025-12-13 08:14:13] 2025-12-13 13:13:14,416 | INFO     | time since job start (5837s) is within the limit (174528.0s)
[2025-12-13 08:14:13] 2025-12-13 13:13:15,975 | INFO     | monitor loop #431: job 0:6929158002 is in state 'finished'
[2025-12-13 08:14:13] 2025-12-13 13:13:15,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 08:14:13] 2025-12-13 13:13:16,426 | INFO     | time since job start (5839s) is within the limit (174528.0s)
[2025-12-13 08:14:13] 2025-12-13 13:13:17,849 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 08:14:13] 2025-12-13 13:13:17,852 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1673.5833333333333
[2025-12-13 08:14:13] 2025-12-13 13:13:17,854 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929158002/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 08:14:13] 2025-12-13 13:13:17,854 | INFO     | extracted standard info from prmon json
[2025-12-13 08:14:13] 2025-12-13 13:13:17,855 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 08:14:13] 2025-12-13 13:13:17,855 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 08:14:13] 2025-12-13 13:13:17,855 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 08:14:13] 2025-12-13 13:13:17,855 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 08:14:13] 2025-12-13 13:13:17,857 | INFO     | fitting pss+swap vs Time
[2025-12-13 08:14:13] 2025-12-13 13:13:17,857 | INFO     | sum of square deviations: 218571540.0
[2025-12-13 08:14:13] 2025-12-13 13:13:17,858 | INFO     | sum of deviations: -11765451066.999996
[2025-12-13 08:14:13] 2025-12-13 13:13:17,858 | INFO     | mean x: 1765628775.0
[2025-12-13 08:14:13] 2025-12-13 13:13:17,858 | INFO     | mean y: 2770424.5168539328
[2025-12-13 08:14:13] 2025-12-13 13:13:17,858 | INFO     | intersect: 95044508039.34836
[2025-12-13 08:14:13] 2025-12-13 13:13:17,858 | INFO     | chi2: 0.0785772816197825
[2025-12-13 08:14:13] 2025-12-13 13:13:17,859 | INFO     | current memory leak: -53.83 B/s (using 89 data points, chi2=0.08)
[2025-12-13 08:14:13] 2025-12-13 13:13:17,859 | INFO     | could have reported an average CPU frequency of 2139 MHz (7 samples)
[2025-12-13 08:14:13] 2025-12-13 13:13:17,859 | INFO     | ..............................
[2025-12-13 08:14:13] 2025-12-13 13:13:17,859 | INFO     | . Timing measurements:
[2025-12-13 08:14:13] 2025-12-13 13:13:17,859 | INFO     | . get job = 0 s
[2025-12-13 08:14:13] 2025-12-13 13:13:17,859 | INFO     | . initial setup = 2 s
[2025-12-13 08:14:13] 2025-12-13 13:13:17,860 | INFO     | . payload setup = 7 s
[2025-12-13 08:14:13] 2025-12-13 13:13:17,860 | INFO     | . stage-in = 0 s
[2025-12-13 08:14:13] 2025-12-13 13:13:17,860 | INFO     | . payload execution = 5802 s
[2025-12-13 08:14:13] 2025-12-13 13:13:17,860 | INFO     | . stage-out = 0 s
[2025-12-13 08:14:13] 2025-12-13 13:13:17,860 | INFO     | . log creation = 0 s
[2025-12-13 08:14:13] 2025-12-13 13:13:17,860 | INFO     | ..............................
[2025-12-13 08:14:13] 2025-12-13 13:13:18,171 | INFO     | 
[2025-12-13 08:14:13] 2025-12-13 13:13:18,172 | INFO     | job summary report
[2025-12-13 08:14:13] 2025-12-13 13:13:18,172 | INFO     | --------------------------------------------------
[2025-12-13 08:14:13] 2025-12-13 13:13:18,172 | INFO     | PanDA job id: 6929158002
[2025-12-13 08:14:13] 2025-12-13 13:13:18,172 | INFO     | task id: 47898763
[2025-12-13 08:14:13] 2025-12-13 13:13:18,172 | INFO     | errors: (none)
[2025-12-13 08:14:13] 2025-12-13 13:13:18,172 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 08:14:13] 2025-12-13 13:13:18,173 | INFO     | pilot state: finished 
[2025-12-13 08:14:13] 2025-12-13 13:13:18,173 | INFO     | transexitcode: 0
[2025-12-13 08:14:13] 2025-12-13 13:13:18,173 | INFO     | exeerrorcode: 0
[2025-12-13 08:14:13] 2025-12-13 13:13:18,173 | INFO     | exeerrordiag: 
[2025-12-13 08:14:13] 2025-12-13 13:13:18,173 | INFO     | exitcode: 0
[2025-12-13 08:14:13] 2025-12-13 13:13:18,173 | INFO     | exitmsg: OK
[2025-12-13 08:14:13] 2025-12-13 13:13:18,174 | INFO     | cpuconsumptiontime: 64009 s
[2025-12-13 08:14:13] 2025-12-13 13:13:18,174 | INFO     | nevents: 400
[2025-12-13 08:14:13] 2025-12-13 13:13:18,174 | INFO     | neventsw: 0
[2025-12-13 08:14:13] 2025-12-13 13:13:18,174 | INFO     | pid: 32243
[2025-12-13 08:14:13] 2025-12-13 13:13:18,174 | INFO     | pgrp: 32243
[2025-12-13 08:14:13] 2025-12-13 13:13:18,174 | INFO     | corecount: 12
[2025-12-13 08:14:13] 2025-12-13 13:13:18,174 | INFO     | event service: False
[2025-12-13 08:14:13] 2025-12-13 13:13:18,175 | INFO     | sizes: {0: 2283772, 1: 2283971, 5: 2284233, 11: 2284289, 5813: 2310951, 5814: 2310950, 5815: 2320132, 5818: 2320188, 5824: 2320382}
[2025-12-13 08:14:13] 2025-12-13 13:13:18,175 | INFO     | --------------------------------------------------
[2025-12-13 08:14:13] 2025-12-13 13:13:18,175 | INFO     | 
[2025-12-13 08:14:13] 2025-12-13 13:13:18,175 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 08:14:13] 2025-12-13 13:13:18,199 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,200 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,201 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,201 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,201 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,201 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,201 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,201 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,202 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,202 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,202 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,202 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 08:14:13] 2025-12-13 13:13:18,202 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,202 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 08:14:13] 2025-12-13 13:13:18,203 | INFO     | job 6929158002 has completed (purged errors)
[2025-12-13 08:14:13] 2025-12-13 13:13:18,203 | INFO     | overall cleanup function is called
[2025-12-13 08:14:13] 2025-12-13 13:13:19,211 | INFO     | --- collectZombieJob: --- 10, [32243]
[2025-12-13 08:14:13] 2025-12-13 13:13:19,211 | INFO     | zombie collector waiting for pid 32243
[2025-12-13 08:14:13] 2025-12-13 13:13:19,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 08:14:13] 2025-12-13 13:13:19,212 | INFO     | collected zombie processes
[2025-12-13 08:14:13] 2025-12-13 13:13:19,212 | INFO     | will attempt to kill all subprocesses of pid=32243
[2025-12-13 08:14:13] 2025-12-13 13:13:19,306 | INFO     | process IDs to be killed: [32243] (in reverse order)
[2025-12-13 08:14:13] 2025-12-13 13:13:19,360 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 08:14:13] 2025-12-13 13:13:19,360 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 08:14:13] 2025-12-13 13:13:19,363 | INFO     | did not find any defunct processes belonging to 32243
[2025-12-13 08:14:13] 2025-12-13 13:13:19,365 | INFO     | did not find any defunct processes belonging to 32243
[2025-12-13 08:14:13] 2025-12-13 13:13:19,365 | INFO     | ready for new job
[2025-12-13 08:14:13] 2025-12-13 13:13:19,365 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 08:14:13] 2025-12-13 13:13:19,367 | INFO     | ***************************************
[2025-12-13 08:14:13] 2025-12-13 13:13:19,367 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 08:14:13] 2025-12-13 13:13:19,367 | INFO     | ***************************************
[2025-12-13 08:14:13] 2025-12-13 13:13:19,367 | INFO     | 
[2025-12-13 08:14:13] 2025-12-13 13:13:19,368 | INFO     | architecture information:
[2025-12-13 08:14:13] 2025-12-13 13:13:19,368 | INFO     | executing command: cat /etc/os-release
[2025-12-13 08:14:13] 2025-12-13 13:13:19,386 | INFO     | cat /etc/os-release:
[2025-12-13 08:14:13] NAME="CentOS Linux"
[2025-12-13 08:14:13] VERSION="7 (Core)"
[2025-12-13 08:14:13] ID="centos"
[2025-12-13 08:14:13] ID_LIKE="rhel fedora"
[2025-12-13 08:14:13] VERSION_ID="7"
[2025-12-13 08:14:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 08:14:13] ANSI_COLOR="0;31"
[2025-12-13 08:14:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 08:14:13] HOME_URL="https://www.centos.org/"
[2025-12-13 08:14:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 08:14:13] 
[2025-12-13 08:14:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 08:14:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 08:14:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 08:14:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 08:14:13] 
[2025-12-13 08:14:13] 2025-12-13 13:13:19,387 | INFO     | ***************************************
[2025-12-13 08:14:13] 2025-12-13 13:13:19,890 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 08:14:13] 2025-12-13 13:13:19,907 | INFO     | sufficient remaining disk space (29321330688 B)
[2025-12-13 08:14:13] 2025-12-13 13:13:19,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 08:14:13] 2025-12-13 13:13:19,908 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 08:14:13] 2025-12-13 13:13:19,908 | INFO     | update_server=False
[2025-12-13 08:14:13] 2025-12-13 13:13:19,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 08:14:13] 2025-12-13 13:13:19,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 08:14:13] 2025-12-13 13:13:19,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 08:14:13] 2025-12-13 13:13:19,909 | INFO     | aborting loop
[2025-12-13 08:14:13] 2025-12-13 13:13:19,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 08:14:13] 2025-12-13 13:13:19,934 | INFO     | all job control threads have been joined
[2025-12-13 08:14:13] 2025-12-13 13:13:20,571 | INFO     | all data control threads have been joined
[2025-12-13 08:14:13] 2025-12-13 13:13:20,914 | INFO     | [job] retrieve thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:20,915 | INFO     | [job] queue monitor thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:20,915 | INFO     | [job] job monitor thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:20,940 | INFO     | [job] control thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:20,953 | INFO     | [job] validate thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:21,060 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:21,087 | INFO     | [payload] failed_post thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:21,162 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:21,282 | INFO     | all payload control threads have been joined
[2025-12-13 08:14:13] 2025-12-13 13:13:21,577 | INFO     | [data] control thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:21,581 | INFO     | [data] copytool_in thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:21,670 | INFO     | [payload] validate_post thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:21,691 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:21,915 | INFO     | [data] copytool_out thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:22,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 08:14:13] 2025-12-13 13:13:22,288 | INFO     | [payload] control thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:26,060 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:30,705 | INFO     | job.realtimelogging is not enabled
[2025-12-13 08:14:13] 2025-12-13 13:13:31,710 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 08:14:13] 2025-12-13 13:13:48,512 | INFO     | 5843s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-12-13 08:14:13] 2025-12-13 13:13:49,629 | INFO     | PID=25821 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 08:14:13] 2025-12-13 13:13:49,629 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 08:14:13] 2025-12-13 13:13:49,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 08:14:13] 2025-12-13 13:13:49,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 08:14:13] 2025-12-13 13:14:06,699 | INFO     | [monitor] cgroup control has ended
[2025-12-13 08:14:13] 2025-12-13 13:14:07,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139929547839296)>', '<ExcThread(monitor, started 139928751040256)>']
[2025-12-13 08:14:13] 2025-12-13 13:14:07,720 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 08:14:13] 2025-12-13 13:14:07,720 | INFO     | [monitor] control thread has ended
[2025-12-13 08:14:13] 2025-12-13 13:14:12,720 | INFO     | all workflow threads have been joined
[2025-12-13 08:14:13] 2025-12-13 13:14:12,720 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 08:14:13] 2025-12-13 13:14:12,721 | INFO     | traces error code: 0
[2025-12-13 08:14:13] 2025-12-13 13:14:12,721 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 08:14:13] 2025-12-13 13:14:12,814 [wrapper] ==== pilot stdout END ====
[2025-12-13 08:14:13] 2025-12-13 13:14:12,818 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 08:14:13] 2025-12-13 13:14:12,822 [wrapper] pilotpid: 25821
[2025-12-13 08:14:13] 2025-12-13 13:14:12,826 [wrapper] Pilot exit status: 0
[2025-12-13 08:14:13] 2025-12-13 13:14:12,841 [wrapper] pandaids: 6929158002
[2025-12-13 08:14:13] 2025-12-13 13:14:12,888 [wrapper] cleanup supervisor_pilot 31672 25822
[2025-12-13 08:14:13] 2025-12-13 13:14:12,892 [wrapper] Test setup, not cleaning
[2025-12-13 08:14:13] 2025-12-13 13:14:12,897 [wrapper] apfmon messages muted
[2025-12-13 08:14:13] 2025-12-13 13:14:12,900 [wrapper] ==== wrapper stdout END ====
[2025-12-13 08:14:13] 2025-12-13 13:14:12,904 [wrapper] ==== wrapper stderr END ====
[2025-12-13 08:14:13]  *** Error codes and diagnostics ***
[2025-12-13 08:14:13]     "exeErrorCode": 0,
[2025-12-13 08:14:13]     "exeErrorDiag": "",
[2025-12-13 08:14:13]     "pilotErrorCode": 0,
[2025-12-13 08:14:13]     "pilotErrorDiag": "",
[2025-12-13 08:14:13]  *** Listing of results directory ***
[2025-12-13 08:14:13] total 437236
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 02:20 pilot3.tar.gz
[2025-12-13 08:14:13] -rwx------ 1 boincer umatlas     36322 Dec 13 02:29 runpilot2-wrapper.sh
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 02:29 queuedata.json
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas       100 Dec 13 06:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 08:14:13] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 06:35 run_atlas
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas       105 Dec 13 06:35 job.xml
[2025-12-13 08:14:13] -rw-r--r-- 2 boincer umatlas 223625598 Dec 13 06:35 EVNT.47898761._000007.pool.root.1
[2025-12-13 08:14:13] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 06:35 start_atlas.sh
[2025-12-13 08:14:13] drwxrwx--x 2 boincer umatlas      4096 Dec 13 06:35 shared
[2025-12-13 08:14:13] -rw-r--r-- 2 boincer umatlas    592385 Dec 13 06:35 input.tar.gz
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas         0 Dec 13 06:35 boinc_lockfile
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas      2499 Dec 13 06:35 pandaJob.out
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas        57 Dec 13 06:35 setup.sh.local
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas    991728 Dec 13 06:35 agis_schedconf.cvmfs.json
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas   1516240 Dec 13 06:35 agis_ddmendpoints.agis.ALL.json
[2025-12-13 08:14:13] drwx------ 5 boincer umatlas      4096 Dec 13 06:35 pilot3
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas 217698627 Dec 13 08:12 HITS.47898763._000167.pool.root.1
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas      1047 Dec 13 08:13 memory_monitor_summary.json
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas    405831 Dec 13 08:13 log.47898763._000167.job.log.tgz.1
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas       530 Dec 13 08:13 boinc_task_state.xml
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas        95 Dec 13 08:13 pilot_heartbeat.json
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas      7839 Dec 13 08:13 heartbeat.json
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas      5952 Dec 13 08:13 init_data.xml
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 08:13 boinc_mmap_file
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas        27 Dec 13 08:13 wrapper_checkpoint.txt
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas      4933 Dec 13 08:14 pilotlog.txt
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas    831206 Dec 13 08:14 log.47898763._000167.job.log.1
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas       357 Dec 13 08:14 output.list
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas       620 Dec 13 08:14 runtime_log
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas   1259520 Dec 13 08:14 result.tar.gz
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas      9344 Dec 13 08:14 runtime_log.err
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas       659 Dec 13 08:14 R15NDmlFZo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmG8NKDmJ5ODvm.diag
[2025-12-13 08:14:13] -rw-r--r-- 1 boincer umatlas     21954 Dec 13 08:14 stderr.txt
[2025-12-13 08:14:13] HITS file was successfully produced:
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas 217698627 Dec 13 08:12 shared/HITS.pool.root.1
[2025-12-13 08:14:13]  *** Contents of shared directory: ***
[2025-12-13 08:14:13] total 432824
[2025-12-13 08:14:13] -rw-r--r-- 2 boincer umatlas 223625598 Dec 13 06:35 ATLAS.root_0
[2025-12-13 08:14:13] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 06:35 start_atlas.sh
[2025-12-13 08:14:13] -rw-r--r-- 2 boincer umatlas    592385 Dec 13 06:35 input.tar.gz
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas 217698627 Dec 13 08:12 HITS.pool.root.1
[2025-12-13 08:14:13] -rw------- 1 boincer umatlas   1259520 Dec 13 08:14 result.tar.gz
08:14:14 (22141): run_atlas exited; CPU time 63987.228639
08:14:14 (22141): called boinc_finish(0)

</stderr_txt>
]]>

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