Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:07:27 (494979): wrapper (7.7.26015): starting
15:07:27 (494979): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 15:07:27] Arguments: --nthreads 4
[2025-12-13 15:07:27] Threads: 4
[2025-12-13 15:07:27] Checking for CVMFS
[2025-12-13 15:07:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 15:07:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 15:07:28] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 15:07:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 15:07:28] 2.9.2.0 362371 437 67848 153962 2 57 19688309 36864000 0 130560 0 345378 99.988 17804 18316 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 15:07:28] CVMFS is ok
[2025-12-13 15:07:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 15:07:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 15:07:28] Further information can be found at the LHC@home message board.
[2025-12-13 15:07:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 15:07:28] Checking for apptainer binary...
[2025-12-13 15:07:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 15:07:28] Running /usr/bin/apptainer --version
[2025-12-13 15:07:28] apptainer version 1.4.1-1.1
[2025-12-13 15:07:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 15:07:28] thA319a
[2025-12-13 15:07:28] apptainer works
[2025-12-13 15:07:28] Set ATHENA_PROC_NUMBER=4
[2025-12-13 15:07:28] Set ATHENA_CORE_NUMBER=4
[2025-12-13 15:07:28] Starting ATLAS job with PandaID=6929244637
[2025-12-13 15:07:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 16:39:48]  *** The last 200 lines of the pilot log: ***
[2025-12-13 16:39:48] 2025-12-13 15:39:00,192 | INFO     | [job] job monitor thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,192 | INFO     | [job] retrieve thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,192 | INFO     | [job] queue monitor thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,407 | INFO     | [payload] validate_post thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,555 | INFO     | [data] control thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,676 | INFO     | [job] validate thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,740 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,798 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,848 | INFO     | [job] control thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,920 | INFO     | [payload] control thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:00,949 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:01,354 | INFO     | [data] copytool_out thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:01,478 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:01,491 | INFO     | [payload] failed_post thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:01,491 | INFO     | [data] copytool_in thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:04,085 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 16:39:48] 2025-12-13 15:39:29,181 | INFO     | PID=498766 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 16:39:48] 2025-12-13 15:39:29,182 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 16:39:48] 2025-12-13 15:39:29,182 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 16:39:48] 2025-12-13 15:39:29,182 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 16:39:48] 2025-12-13 15:39:42,787 | INFO     | [monitor] cgroup control has ended
[2025-12-13 16:39:48] 2025-12-13 15:39:42,965 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140278679861056)>', '<ExcThread(monitor, started 140277389981440)>']
[2025-12-13 16:39:48] 2025-12-13 15:39:43,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 16:39:48] 2025-12-13 15:39:43,257 | INFO     | [monitor] control thread has ended
[2025-12-13 16:39:48] 2025-12-13 15:39:47,991 | INFO     | all workflow threads have been joined
[2025-12-13 16:39:48] 2025-12-13 15:39:47,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 16:39:48] 2025-12-13 15:39:47,992 | INFO     | traces error code: 0
[2025-12-13 16:39:48] 2025-12-13 15:39:47,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 16:39:48] 2025-12-13 15:39:48,074 [wrapper] ==== pilot stdout END ====
[2025-12-13 16:39:48] 2025-12-13 15:39:48,078 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 16:39:48] 2025-12-13 15:39:48,082 [wrapper] pilotpid: 498766
[2025-12-13 16:39:48] 2025-12-13 15:39:48,086 [wrapper] Pilot exit status: 0
[2025-12-13 16:39:48] 2025-12-13 15:39:48,098 [wrapper] pandaids: 6929244637
[2025-12-13 16:39:48] 2025-12-13 15:39:48,121 [wrapper] cleanup supervisor_pilot  517649 498767
[2025-12-13 16:39:48] 2025-12-13 15:39:48,125 [wrapper] Test setup, not cleaning
[2025-12-13 16:39:48] 2025-12-13 15:39:48,129 [wrapper] apfmon messages muted
[2025-12-13 16:39:48] 2025-12-13 15:39:48,133 [wrapper] ==== wrapper stdout END ====
[2025-12-13 16:39:48] 2025-12-13 15:39:48,137 [wrapper] ==== wrapper stderr END ====
[2025-12-13 16:39:48]  *** Error codes and diagnostics ***
[2025-12-13 16:39:48]     "exeErrorCode": 0,
[2025-12-13 16:39:48]     "exeErrorDiag": "",
[2025-12-13 16:39:48]     "pilotErrorCode": 0,
[2025-12-13 16:39:48]     "pilotErrorDiag": "",
[2025-12-13 16:39:48]  *** Listing of results directory ***
[2025-12-13 16:39:48] total 401796
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:51 pilot3.tar.gz
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc      5112 Dec 13 10:03 queuedata.json
[2025-12-13 16:39:48] -rwx------ 1 boinc boinc     36322 Dec 13 10:04 runpilot2-wrapper.sh
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc       100 Dec 13 15:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 16:39:48] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 15:07 run_atlas
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc       105 Dec 13 15:07 job.xml
[2025-12-13 16:39:48] -rw-r--r-- 2 boinc boinc 211692798 Dec 13 15:07 EVNT.47898779._000100.pool.root.1
[2025-12-13 16:39:48] -rw-r--r-- 2 boinc boinc    592390 Dec 13 15:07 input.tar.gz
[2025-12-13 16:39:48] -rw-r--r-- 2 boinc boinc     15847 Dec 13 15:07 start_atlas.sh
[2025-12-13 16:39:48] drwxrwx--x 2 boinc boinc      4096 Dec 13 15:07 shared
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc         0 Dec 13 15:07 boinc_setup_complete
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc      6367 Dec 13 15:07 init_data.xml
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc         0 Dec 13 15:07 boinc_lockfile
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc      2520 Dec 13 15:07 pandaJob.out
[2025-12-13 16:39:48] -rw------- 1 boinc boinc    991736 Dec 13 15:07 agis_schedconf.cvmfs.json
[2025-12-13 16:39:48] -rw------- 1 boinc boinc   1516240 Dec 13 15:07 agis_ddmendpoints.agis.ALL.json
[2025-12-13 16:39:48] drwx------ 5 boinc boinc      4096 Dec 13 15:07 pilot3
[2025-12-13 16:39:48] -rw------- 1 boinc boinc 193713863 Dec 13 16:38 HITS.47898782._002182.pool.root.1
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc       529 Dec 13 16:38 boinc_task_state.xml
[2025-12-13 16:39:48] -rw------- 1 boinc boinc      1015 Dec 13 16:38 memory_monitor_summary.json
[2025-12-13 16:39:48] -rw------- 1 boinc boinc    264427 Dec 13 16:38 log.47898782._002182.job.log.tgz.1
[2025-12-13 16:39:48] -rw------- 1 boinc boinc      7751 Dec 13 16:38 heartbeat.json
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc        27 Dec 13 16:39 wrapper_checkpoint.txt
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc      8192 Dec 13 16:39 boinc_mmap_file
[2025-12-13 16:39:48] -rw------- 1 boinc boinc        95 Dec 13 16:39 pilot_heartbeat.json
[2025-12-13 16:39:48] -rw------- 1 boinc boinc      4751 Dec 13 16:39 pilotlog.txt
[2025-12-13 16:39:48] -rw------- 1 boinc boinc    798937 Dec 13 16:39 log.47898782._002182.job.log.1
[2025-12-13 16:39:48] -rw------- 1 boinc boinc       357 Dec 13 16:39 output.list
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc       620 Dec 13 16:39 runtime_log
[2025-12-13 16:39:48] -rw------- 1 boinc boinc   1085440 Dec 13 16:39 result.tar.gz
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc      8902 Dec 13 16:39 runtime_log.err
[2025-12-13 16:39:48] -rw------- 1 boinc boinc       659 Dec 13 16:39 2tGLDm0iao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeTOKDmCPJJRm.diag
[2025-12-13 16:39:48] -rw-r--r-- 1 boinc boinc      6293 Dec 13 16:39 stderr.txt
[2025-12-13 16:39:48] HITS file was successfully produced:
[2025-12-13 16:39:48] -rw------- 1 boinc boinc 193713863 Dec 13 16:38 shared/HITS.pool.root.1
[2025-12-13 16:39:48]  *** Contents of shared directory: ***
[2025-12-13 16:39:48] total 397572
[2025-12-13 16:39:48] -rw-r--r-- 2 boinc boinc 211692798 Dec 13 15:07 ATLAS.root_0
[2025-12-13 16:39:48] -rw-r--r-- 2 boinc boinc    592390 Dec 13 15:07 input.tar.gz
[2025-12-13 16:39:48] -rw-r--r-- 2 boinc boinc     15847 Dec 13 15:07 start_atlas.sh
[2025-12-13 16:39:48] -rw------- 1 boinc boinc 193713863 Dec 13 16:38 HITS.pool.root.1
[2025-12-13 16:39:48] -rw------- 1 boinc boinc   1085440 Dec 13 16:39 result.tar.gz
16:39:49 (494979): run_atlas exited; CPU time 20864.123818
16:39:49 (494979): called boinc_finish(0)

</stderr_txt>
]]>

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