Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:42:29 (23068): wrapper (7.7.26015): starting
05:42:29 (23068): wrapper: running run_atlas (--nthreads 8)
[2025-12-13 05:42:29] Arguments: --nthreads 8
[2025-12-13 05:42:29] Threads: 8
[2025-12-13 05:42:29] Checking for CVMFS
[2025-12-13 05:42:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 05:42:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 05:42:29] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 05:42:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 05:42:30] 2.11.2.0 2895 97674 95248 153957 0 56 13714978 20275201 1 130560 0 28317039 99.849 6535108 33162 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-12-13 05:42:30] CVMFS is ok
[2025-12-13 05:42:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 05:42:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 05:42:30] Further information can be found at the LHC@home message board.
[2025-12-13 05:42:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 05:42:30] Checking for apptainer binary...
[2025-12-13 05:42:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 05:42:30] Running /usr/bin/apptainer --version
[2025-12-13 05:42:30] apptainer version 1.3.2-1.el7
[2025-12-13 05:42:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 05:42:31] c-204-7.aglt2.org
[2025-12-13 05:42:31] apptainer works
[2025-12-13 05:42:31] Set ATHENA_PROC_NUMBER=8
[2025-12-13 05:42:31] Set ATHENA_CORE_NUMBER=8
[2025-12-13 05:42:31] Starting ATLAS job with PandaID=6929041525
[2025-12-13 05:42:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 08:05:09]  *** The last 200 lines of the pilot log: ***
[2025-12-13 08:05:09] 2025-12-13 13:04:24,187 | INFO     | maximum number of monitored processes: 6
[2025-12-13 08:05:09] 2025-12-13 13:04:24,625 | INFO     | time since job start (8495s) is within the limit (174528.0s)
[2025-12-13 08:05:09] 2025-12-13 13:04:26,629 | INFO     | time since job start (8497s) is within the limit (174528.0s)
[2025-12-13 08:05:09] 2025-12-13 13:04:26,690 | INFO     | monitor loop #623: job 0:6929041525 is in state 'finished'
[2025-12-13 08:05:09] 2025-12-13 13:04:26,690 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 08:05:09] 2025-12-13 13:04:28,632 | INFO     | time since job start (8499s) is within the limit (174528.0s)
[2025-12-13 08:05:09] 2025-12-13 13:04:29,193 | INFO     | monitor loop #624: job 0:6929041525 is in state 'finished'
[2025-12-13 08:05:09] 2025-12-13 13:04:29,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,203 | INFO     | CPU arch script returned: x86-64-v2
[2025-12-13 08:05:09] 2025-12-13 13:04:30,206 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1629.25
[2025-12-13 08:05:09] 2025-12-13 13:04:30,209 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6929041525/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,209 | INFO     | extracted standard info from prmon json
[2025-12-13 08:05:09] 2025-12-13 13:04:30,210 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 08:05:09] 2025-12-13 13:04:30,210 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 08:05:09] 2025-12-13 13:04:30,210 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 08:05:09] 2025-12-13 13:04:30,210 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 08:05:09] 2025-12-13 13:04:30,215 | INFO     | fitting pss+swap vs Time
[2025-12-13 08:05:09] 2025-12-13 13:04:30,215 | INFO     | sum of square deviations: 832722590.0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,226 | INFO     | sum of deviations: 6968155171.999998
[2025-12-13 08:05:09] 2025-12-13 13:04:30,226 | INFO     | mean x: 1765626809.0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,226 | INFO     | mean y: 2486379.021582734
[2025-12-13 08:05:09] 2025-12-13 13:04:30,226 | INFO     | intersect: -14772135720.464396
[2025-12-13 08:05:09] 2025-12-13 13:04:30,227 | INFO     | chi2: 1.4923875168867768
[2025-12-13 08:05:09] 2025-12-13 13:04:30,227 | INFO     | sum of square deviations: 746051197.5
[2025-12-13 08:05:09] 2025-12-13 13:04:30,228 | INFO     | sum of deviations: 6775311632.500004
[2025-12-13 08:05:09] 2025-12-13 13:04:30,228 | INFO     | mean x: 1765626656.5
[2025-12-13 08:05:09] 2025-12-13 13:04:30,228 | INFO     | mean y: 2486039.574626866
[2025-12-13 08:05:09] 2025-12-13 13:04:30,228 | INFO     | intersect: -16032165288.006062
[2025-12-13 08:05:09] 2025-12-13 13:04:30,228 | INFO     | chi2: 1.4940032482098486
[2025-12-13 08:05:09] 2025-12-13 13:04:30,229 | INFO     | current chi2=1.4940032482098486 (change=-0.1082648645066616 %)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,229 | INFO     | right removable region: 133
[2025-12-13 08:05:09] 2025-12-13 13:04:30,229 | INFO     | sum of square deviations: 746051197.5
[2025-12-13 08:05:09] 2025-12-13 13:04:30,230 | INFO     | sum of deviations: -12654582369.999998
[2025-12-13 08:05:09] 2025-12-13 13:04:30,230 | INFO     | mean x: 1765626961.5
[2025-12-13 08:05:09] 2025-12-13 13:04:30,230 | INFO     | mean y: 2520309.2835820895
[2025-12-13 08:05:09] 2025-12-13 13:04:30,230 | INFO     | intersect: 29951231461.904663
[2025-12-13 08:05:09] 2025-12-13 13:04:30,230 | INFO     | chi2: 0.11475234335361223
[2025-12-13 08:05:09] 2025-12-13 13:04:30,231 | INFO     | current chi2=0.11475234335361223 (change=92.31082128099051 %)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,231 | INFO     | sum of square deviations: 665612480.0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,231 | INFO     | sum of deviations: -11201834186.0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,232 | INFO     | mean x: 1765627114.0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,232 | INFO     | mean y: 2517448.6821705424
[2025-12-13 08:05:09] 2025-12-13 13:04:30,232 | INFO     | intersect: 29716897451.4936
[2025-12-13 08:05:09] 2025-12-13 13:04:30,232 | INFO     | chi2: 0.09892795601520324
[2025-12-13 08:05:09] 2025-12-13 13:04:30,232 | INFO     | current chi2=0.09892795601520324 (change=13.790034151760844 %)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,232 | INFO     | left removable region: 20
[2025-12-13 08:05:09] 2025-12-13 13:04:30,233 | INFO     | sum of square deviations: 447383272.0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,233 | INFO     | sum of deviations: -2374227116.0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,233 | INFO     | mean x: 1765627236.0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,234 | INFO     | mean y: 2498887.256637168
[2025-12-13 08:05:09] 2025-12-13 13:04:30,234 | INFO     | intersect: 9372540913.45768
[2025-12-13 08:05:09] 2025-12-13 13:04:30,234 | INFO     | chi2: 0.04521393560351762
[2025-12-13 08:05:09] 2025-12-13 13:04:30,234 | INFO     | current memory leak: -5.31 B/s (using 113 data points, chi2=0.05)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,235 | INFO     | could have reported an average CPU frequency of 1937 MHz (8 samples)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,235 | INFO     | ..............................
[2025-12-13 08:05:09] 2025-12-13 13:04:30,235 | INFO     | . Timing measurements:
[2025-12-13 08:05:09] 2025-12-13 13:04:30,235 | INFO     | . get job = 0 s
[2025-12-13 08:05:09] 2025-12-13 13:04:30,235 | INFO     | . initial setup = 2 s
[2025-12-13 08:05:09] 2025-12-13 13:04:30,235 | INFO     | . payload setup = 8 s
[2025-12-13 08:05:09] 2025-12-13 13:04:30,235 | INFO     | . stage-in = 0 s
[2025-12-13 08:05:09] 2025-12-13 13:04:30,236 | INFO     | . payload execution = 8462 s
[2025-12-13 08:05:09] 2025-12-13 13:04:30,236 | INFO     | . stage-out = 0 s
[2025-12-13 08:05:09] 2025-12-13 13:04:30,236 | INFO     | . log creation = 0 s
[2025-12-13 08:05:09] 2025-12-13 13:04:30,236 | INFO     | ..............................
[2025-12-13 08:05:09] 2025-12-13 13:04:30,637 | INFO     | time since job start (8501s) is within the limit (174528.0s)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,800 | INFO     | 
[2025-12-13 08:05:09] 2025-12-13 13:04:30,800 | INFO     | job summary report
[2025-12-13 08:05:09] 2025-12-13 13:04:30,800 | INFO     | --------------------------------------------------
[2025-12-13 08:05:09] 2025-12-13 13:04:30,800 | INFO     | PanDA job id: 6929041525
[2025-12-13 08:05:09] 2025-12-13 13:04:30,800 | INFO     | task id: 47886831
[2025-12-13 08:05:09] 2025-12-13 13:04:30,801 | INFO     | errors: (none)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 08:05:09] 2025-12-13 13:04:30,801 | INFO     | pilot state: finished 
[2025-12-13 08:05:09] 2025-12-13 13:04:30,801 | INFO     | transexitcode: 0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,801 | INFO     | exeerrorcode: 0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,801 | INFO     | exeerrordiag: 
[2025-12-13 08:05:09] 2025-12-13 13:04:30,801 | INFO     | exitcode: 0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,802 | INFO     | exitmsg: OK
[2025-12-13 08:05:09] 2025-12-13 13:04:30,802 | INFO     | cpuconsumptiontime: 63486 s
[2025-12-13 08:05:09] 2025-12-13 13:04:30,802 | INFO     | nevents: 400
[2025-12-13 08:05:09] 2025-12-13 13:04:30,802 | INFO     | neventsw: 0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,802 | INFO     | pid: 814
[2025-12-13 08:05:09] 2025-12-13 13:04:30,802 | INFO     | pgrp: 814
[2025-12-13 08:05:09] 2025-12-13 13:04:30,802 | INFO     | corecount: 8
[2025-12-13 08:05:09] 2025-12-13 13:04:30,802 | INFO     | event service: False
[2025-12-13 08:05:09] 2025-12-13 13:04:30,803 | INFO     | sizes: {0: 2283762, 1: 2284017, 7: 2284279, 12: 2284307, 8474: 2312176, 8475: 2321174, 8477: 2321358, 8484: 2321552}
[2025-12-13 08:05:09] 2025-12-13 13:04:30,803 | INFO     | --------------------------------------------------
[2025-12-13 08:05:09] 2025-12-13 13:04:30,803 | INFO     | 
[2025-12-13 08:05:09] 2025-12-13 13:04:30,803 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-13 08:05:09] 2025-12-13 13:04:30,831 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,831 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,831 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,831 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,833 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,833 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,833 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,834 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,834 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 08:05:09] 2025-12-13 13:04:30,834 | INFO     | job 6929041525 has completed (purged errors)
[2025-12-13 08:05:09] 2025-12-13 13:04:30,834 | INFO     | overall cleanup function is called
[2025-12-13 08:05:09] 2025-12-13 13:04:31,760 | INFO     | PID=26747 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-12-13 08:05:09] 2025-12-13 13:04:31,842 | INFO     | --- collectZombieJob: --- 10, [814]
[2025-12-13 08:05:09] 2025-12-13 13:04:31,842 | INFO     | zombie collector waiting for pid 814
[2025-12-13 08:05:09] 2025-12-13 13:04:31,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 08:05:09] 2025-12-13 13:04:31,842 | INFO     | collected zombie processes
[2025-12-13 08:05:09] 2025-12-13 13:04:31,843 | INFO     | will attempt to kill all subprocesses of pid=814
[2025-12-13 08:05:09] 2025-12-13 13:04:31,934 | INFO     | process IDs to be killed: [814] (in reverse order)
[2025-12-13 08:05:09] 2025-12-13 13:04:31,996 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 08:05:09] 2025-12-13 13:04:31,997 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 08:05:09] 2025-12-13 13:04:32,000 | INFO     | did not find any defunct processes belonging to 814
[2025-12-13 08:05:09] 2025-12-13 13:04:32,003 | INFO     | did not find any defunct processes belonging to 814
[2025-12-13 08:05:09] 2025-12-13 13:04:32,003 | INFO     | ready for new job
[2025-12-13 08:05:09] 2025-12-13 13:04:32,003 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 08:05:09] 2025-12-13 13:04:32,005 | INFO     | ***************************************
[2025-12-13 08:05:09] 2025-12-13 13:04:32,005 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 08:05:09] 2025-12-13 13:04:32,005 | INFO     | ***************************************
[2025-12-13 08:05:09] 2025-12-13 13:04:32,005 | INFO     | 
[2025-12-13 08:05:09] 2025-12-13 13:04:32,006 | INFO     | architecture information:
[2025-12-13 08:05:09] 2025-12-13 13:04:32,006 | INFO     | executing command: cat /etc/os-release
[2025-12-13 08:05:09] 2025-12-13 13:04:32,023 | INFO     | cat /etc/os-release:
[2025-12-13 08:05:09] NAME="CentOS Linux"
[2025-12-13 08:05:09] VERSION="7 (Core)"
[2025-12-13 08:05:09] ID="centos"
[2025-12-13 08:05:09] ID_LIKE="rhel fedora"
[2025-12-13 08:05:09] VERSION_ID="7"
[2025-12-13 08:05:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 08:05:09] ANSI_COLOR="0;31"
[2025-12-13 08:05:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 08:05:09] HOME_URL="https://www.centos.org/"
[2025-12-13 08:05:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 08:05:09] 
[2025-12-13 08:05:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 08:05:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 08:05:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 08:05:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 08:05:09] 
[2025-12-13 08:05:09] 2025-12-13 13:04:32,024 | INFO     | ***************************************
[2025-12-13 08:05:09] 2025-12-13 13:04:32,527 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-13 08:05:09] 2025-12-13 13:04:32,548 | INFO     | sufficient remaining disk space (18676187136 B)
[2025-12-13 08:05:09] 2025-12-13 13:04:32,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 08:05:09] 2025-12-13 13:04:32,549 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 08:05:09] 2025-12-13 13:04:32,549 | INFO     | update_server=False
[2025-12-13 08:05:09] 2025-12-13 13:04:32,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 08:05:09] 2025-12-13 13:04:32,549 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 08:05:09] 2025-12-13 13:04:32,550 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-12-13 08:05:09] 2025-12-13 13:04:32,550 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 08:05:09] 2025-12-13 13:04:32,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 08:05:09] 2025-12-13 13:04:32,551 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 08:05:09] 2025-12-13 13:04:32,665 | INFO     | all data control threads have been joined
[2025-12-13 08:05:09] 2025-12-13 13:04:32,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 08:05:09] 2025-12-13 13:04:32,696 | INFO     | aborting loop
[2025-12-13 08:05:09] 2025-12-13 13:04:32,873 | INFO     | all payload control threads have been joined
[2025-12-13 08:05:09] 2025-12-13 13:04:32,956 | INFO     | all job control threads have been joined
[2025-12-13 08:05:09] 2025-12-13 13:04:33,184 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 08:05:09] 2025-12-13 13:04:33,553 | INFO     | [job] retrieve thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,575 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,671 | INFO     | [data] control thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,702 | INFO     | [job] job monitor thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,824 | INFO     | [payload] failed_post thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,876 | INFO     | [payload] control thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,900 | INFO     | [payload] validate_post thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,942 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,954 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:33,961 | INFO     | [job] control thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:34,519 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:34,555 | INFO     | [data] copytool_out thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:34,836 | INFO     | [job] validate thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:34,881 | INFO     | [data] copytool_in thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:35,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 08:05:09] 2025-12-13 13:04:36,351 | INFO     | [job] queue monitor thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:04:37,189 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 08:05:09] 2025-12-13 13:05:02,539 | INFO     | [monitor] cgroup control has ended
[2025-12-13 08:05:09] 2025-12-13 13:05:03,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056057395008)>', '<ExcThread(monitor, started 140055142176512)>']
[2025-12-13 08:05:09] 2025-12-13 13:05:04,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 08:05:09] 2025-12-13 13:05:04,706 | INFO     | [monitor] control thread has ended
[2025-12-13 08:05:09] 2025-12-13 13:05:08,899 | INFO     | all workflow threads have been joined
[2025-12-13 08:05:09] 2025-12-13 13:05:08,900 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 08:05:09] 2025-12-13 13:05:08,900 | INFO     | traces error code: 0
[2025-12-13 08:05:09] 2025-12-13 13:05:08,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 08:05:09] 2025-12-13 13:05:09,019 [wrapper] ==== pilot stdout END ====
[2025-12-13 08:05:09] 2025-12-13 13:05:09,024 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 08:05:09] 2025-12-13 13:05:09,029 [wrapper] pilotpid: 26747
[2025-12-13 08:05:09] 2025-12-13 13:05:09,034 [wrapper] Pilot exit status: 0
[2025-12-13 08:05:09] 2025-12-13 13:05:09,054 [wrapper] pandaids: 6929041525
[2025-12-13 08:05:09] 2025-12-13 13:05:09,104 [wrapper] cleanup supervisor_pilot 29123 26748
[2025-12-13 08:05:09] 2025-12-13 13:05:09,110 [wrapper] Test setup, not cleaning
[2025-12-13 08:05:09] 2025-12-13 13:05:09,116 [wrapper] apfmon messages muted
[2025-12-13 08:05:09] 2025-12-13 13:05:09,120 [wrapper] ==== wrapper stdout END ====
[2025-12-13 08:05:09] 2025-12-13 13:05:09,124 [wrapper] ==== wrapper stderr END ====
[2025-12-13 08:05:09]  *** Error codes and diagnostics ***
[2025-12-13 08:05:09]     "exeErrorCode": 0,
[2025-12-13 08:05:09]     "exeErrorDiag": "",
[2025-12-13 08:05:09]     "pilotErrorCode": 0,
[2025-12-13 08:05:09]     "pilotErrorDiag": "",
[2025-12-13 08:05:09]  *** Listing of results directory ***
[2025-12-13 08:05:09] total 341752
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas    579449 Dec 13 01:26 pilot3.tar.gz
[2025-12-13 08:05:09] -rwx------ 1 boincer umatlas     36322 Dec 13 01:51 runpilot2-wrapper.sh
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas      5112 Dec 13 01:51 queuedata.json
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas       100 Dec 13 05:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 08:05:09] -rwxr-xr-x 1 boincer umatlas      7986 Dec 13 05:42 run_atlas
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas       105 Dec 13 05:42 job.xml
[2025-12-13 08:05:09] -rw-r--r-- 2 boincer umatlas 193502969 Dec 13 05:42 EVNT.47886829._000145.pool.root.1
[2025-12-13 08:05:09] -rw-r--r-- 2 boincer umatlas    592416 Dec 13 05:42 input.tar.gz
[2025-12-13 08:05:09] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 05:42 start_atlas.sh
[2025-12-13 08:05:09] drwxrwx--x 2 boincer umatlas      4096 Dec 13 05:42 shared
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas         0 Dec 13 05:42 boinc_lockfile
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas      2537 Dec 13 05:42 pandaJob.out
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas        57 Dec 13 05:42 setup.sh.local
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas    991728 Dec 13 05:42 agis_schedconf.cvmfs.json
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas   1516240 Dec 13 05:42 agis_ddmendpoints.agis.ALL.json
[2025-12-13 08:05:09] drwx------ 5 boincer umatlas      4096 Dec 13 05:42 pilot3
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas      5909 Dec 13 08:03 init_data.xml
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas        95 Dec 13 08:03 pilot_heartbeat.json
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas 149390788 Dec 13 08:03 HITS.47886831._003571.pool.root.1
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas       530 Dec 13 08:04 boinc_task_state.xml
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas      1048 Dec 13 08:04 memory_monitor_summary.json
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas    385252 Dec 13 08:04 log.47886831._003571.job.log.tgz.1
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas      7836 Dec 13 08:04 heartbeat.json
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas      8192 Dec 13 08:04 boinc_mmap_file
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas        27 Dec 13 08:04 wrapper_checkpoint.txt
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas      4552 Dec 13 08:05 pilotlog.txt
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas   1185063 Dec 13 08:05 log.47886831._003571.job.log.1
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas       357 Dec 13 08:05 output.list
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas       620 Dec 13 08:05 runtime_log
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas   1587200 Dec 13 08:05 result.tar.gz
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas       658 Dec 13 08:05 mutMDmLeYo8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmk6NKDmgwewFn.diag
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas      9337 Dec 13 08:05 runtime_log.err
[2025-12-13 08:05:09] -rw-r--r-- 1 boincer umatlas     21281 Dec 13 08:05 stderr.txt
[2025-12-13 08:05:09] HITS file was successfully produced:
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas 149390788 Dec 13 08:03 shared/HITS.pool.root.1
[2025-12-13 08:05:09]  *** Contents of shared directory: ***
[2025-12-13 08:05:09] total 337012
[2025-12-13 08:05:09] -rw-r--r-- 2 boincer umatlas 193502969 Dec 13 05:42 ATLAS.root_0
[2025-12-13 08:05:09] -rw-r--r-- 2 boincer umatlas    592416 Dec 13 05:42 input.tar.gz
[2025-12-13 08:05:09] -rw-r--r-- 2 boincer umatlas     15847 Dec 13 05:42 start_atlas.sh
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas 149390788 Dec 13 08:03 HITS.pool.root.1
[2025-12-13 08:05:09] -rw------- 1 boincer umatlas   1587200 Dec 13 08:05 result.tar.gz
08:05:10 (23068): run_atlas exited; CPU time 63445.555025
08:05:10 (23068): called boinc_finish(0)

</stderr_txt>
]]>

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