Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:35:36 (143693): wrapper (7.7.26015): starting
14:35:36 (143693): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 14:35:36] Arguments: --nthreads 4
[2025-12-13 14:35:36] Threads: 4
[2025-12-13 14:35:36] Checking for CVMFS
[2025-12-13 14:35:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-13 14:35:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-13 14:35:36] Running cvmfs_config stat atlas.cern.ch
[2025-12-13 14:35:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-13 14:35:37] 2.9.2.0 3090 316 69240 153962 0 186 29717690 36864001 0 130560 0 368579 99.994 12242 17242 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-13 14:35:37] CVMFS is ok
[2025-12-13 14:35:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 14:35:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 14:35:37] Further information can be found at the LHC@home message board.
[2025-12-13 14:35:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 14:35:37] Checking for apptainer binary...
[2025-12-13 14:35:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-13 14:35:37] Running /usr/bin/apptainer --version
[2025-12-13 14:35:37] apptainer version 1.4.1-1.1
[2025-12-13 14:35:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 14:35:37] thA373a
[2025-12-13 14:35:37] apptainer works
[2025-12-13 14:35:37] Set ATHENA_PROC_NUMBER=4
[2025-12-13 14:35:37] Set ATHENA_CORE_NUMBER=4
[2025-12-13 14:35:37] Starting ATLAS job with PandaID=6929243577
[2025-12-13 14:35:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 16:10:59]  *** The last 200 lines of the pilot log: ***
[2025-12-13 16:10:59] 2025-12-13 15:10:22,923 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 16:10:59] 2025-12-13 15:10:22,923 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 16:10:59] 2025-12-13 15:10:22,923 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 16:10:59] 2025-12-13 15:10:22,923 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 16:10:59] 2025-12-13 15:10:22,923 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 16:10:59] 2025-12-13 15:10:22,923 | INFO     | job 6929243577 has completed (purged errors)
[2025-12-13 16:10:59] 2025-12-13 15:10:22,923 | INFO     | overall cleanup function is called
[2025-12-13 16:10:59] 2025-12-13 15:10:23,930 | INFO     | --- collectZombieJob: --- 10, [154063]
[2025-12-13 16:10:59] 2025-12-13 15:10:23,930 | INFO     | zombie collector waiting for pid 154063
[2025-12-13 16:10:59] 2025-12-13 15:10:23,930 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 16:10:59] 2025-12-13 15:10:23,930 | INFO     | collected zombie processes
[2025-12-13 16:10:59] 2025-12-13 15:10:23,930 | INFO     | will attempt to kill all subprocesses of pid=154063
[2025-12-13 16:10:59] 2025-12-13 15:10:23,975 | INFO     | process IDs to be killed: [154063] (in reverse order)
[2025-12-13 16:10:59] 2025-12-13 15:10:24,008 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 16:10:59] 2025-12-13 15:10:24,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 16:10:59] 2025-12-13 15:10:24,010 | INFO     | did not find any defunct processes belonging to 154063
[2025-12-13 16:10:59] 2025-12-13 15:10:24,011 | INFO     | did not find any defunct processes belonging to 154063
[2025-12-13 16:10:59] 2025-12-13 15:10:24,011 | INFO     | ready for new job
[2025-12-13 16:10:59] 2025-12-13 15:10:24,011 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 16:10:59] 2025-12-13 15:10:24,012 | INFO     | ***************************************
[2025-12-13 16:10:59] 2025-12-13 15:10:24,012 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 16:10:59] 2025-12-13 15:10:24,012 | INFO     | ***************************************
[2025-12-13 16:10:59] 2025-12-13 15:10:24,012 | INFO     | 
[2025-12-13 16:10:59] 2025-12-13 15:10:24,013 | INFO     | architecture information:
[2025-12-13 16:10:59] 2025-12-13 15:10:24,013 | INFO     | executing command: cat /etc/os-release
[2025-12-13 16:10:59] 2025-12-13 15:10:24,026 | INFO     | cat /etc/os-release:
[2025-12-13 16:10:59] NAME="CentOS Linux"
[2025-12-13 16:10:59] VERSION="7 (Core)"
[2025-12-13 16:10:59] ID="centos"
[2025-12-13 16:10:59] ID_LIKE="rhel fedora"
[2025-12-13 16:10:59] VERSION_ID="7"
[2025-12-13 16:10:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 16:10:59] ANSI_COLOR="0;31"
[2025-12-13 16:10:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 16:10:59] HOME_URL="https://www.centos.org/"
[2025-12-13 16:10:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 16:10:59] 
[2025-12-13 16:10:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 16:10:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 16:10:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 16:10:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 16:10:59] 
[2025-12-13 16:10:59] 2025-12-13 15:10:24,027 | INFO     | ***************************************
[2025-12-13 16:10:59] 2025-12-13 15:10:24,530 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-13 16:10:59] 2025-12-13 15:10:24,546 | INFO     | sufficient remaining disk space (330600284160 B)
[2025-12-13 16:10:59] 2025-12-13 15:10:24,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 16:10:59] 2025-12-13 15:10:24,547 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 16:10:59] 2025-12-13 15:10:24,547 | INFO     | update_server=False
[2025-12-13 16:10:59] 2025-12-13 15:10:24,547 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 16:10:59] 2025-12-13 15:10:24,547 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 16:10:59] 2025-12-13 15:10:24,547 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:10:59] 2025-12-13 15:10:24,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 16:10:59] 2025-12-13 15:10:24,998 | INFO     | aborting loop
[2025-12-13 16:10:59] 2025-12-13 15:10:25,072 | INFO     | all data control threads have been joined
[2025-12-13 16:10:59] 2025-12-13 15:10:25,084 | INFO     | all job control threads have been joined
[2025-12-13 16:10:59] 2025-12-13 15:10:25,552 | INFO     | [job] retrieve thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:25,553 | INFO     | [job] queue monitor thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:25,887 | INFO     | all payload control threads have been joined
[2025-12-13 16:10:59] 2025-12-13 15:10:26,004 | INFO     | [job] job monitor thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,012 | INFO     | [data] copytool_in thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,078 | INFO     | [data] control thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,090 | INFO     | [job] control thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,147 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,184 | INFO     | [payload] failed_post thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,553 | INFO     | [data] copytool_out thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,754 | INFO     | [job] validate thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,870 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,885 | INFO     | [payload] validate_post thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,892 | INFO     | [payload] control thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:26,951 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:27,415 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 16:10:59] 2025-12-13 15:10:31,422 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:34,786 | INFO     | job.realtimelogging is not enabled
[2025-12-13 16:10:59] 2025-12-13 15:10:35,791 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 16:10:59] 2025-12-13 15:10:52,626 | INFO     | [monitor] cgroup control has ended
[2025-12-13 16:10:59] 2025-12-13 15:10:54,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140318732420928)>', '<ExcThread(monitor, started 140317722408704)>']
[2025-12-13 16:10:59] 2025-12-13 15:10:55,025 | INFO     | PID=147492 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-13 16:10:59] 2025-12-13 15:10:55,025 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 16:10:59] 2025-12-13 15:10:55,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 16:10:59] 2025-12-13 15:10:55,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 16:10:59] 2025-12-13 15:10:55,025 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 16:10:59] 2025-12-13 15:10:55,025 | INFO     | [monitor] control thread has ended
[2025-12-13 16:10:59] 2025-12-13 15:10:59,561 | INFO     | all workflow threads have been joined
[2025-12-13 16:10:59] 2025-12-13 15:10:59,561 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 16:10:59] 2025-12-13 15:10:59,561 | INFO     | traces error code: 0
[2025-12-13 16:10:59] 2025-12-13 15:10:59,562 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 16:10:59] 2025-12-13 15:10:59,642 [wrapper] ==== pilot stdout END ====
[2025-12-13 16:10:59] 2025-12-13 15:10:59,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 16:10:59] 2025-12-13 15:10:59,650 [wrapper] pilotpid: 147492
[2025-12-13 16:10:59] 2025-12-13 15:10:59,655 [wrapper] Pilot exit status: 0
[2025-12-13 16:10:59] 2025-12-13 15:10:59,667 [wrapper] pandaids: 6929243577
[2025-12-13 16:10:59] 2025-12-13 15:10:59,690 [wrapper] cleanup supervisor_pilot  166225 147493
[2025-12-13 16:10:59] 2025-12-13 15:10:59,693 [wrapper] Test setup, not cleaning
[2025-12-13 16:10:59] 2025-12-13 15:10:59,697 [wrapper] apfmon messages muted
[2025-12-13 16:10:59] 2025-12-13 15:10:59,701 [wrapper] ==== wrapper stdout END ====
[2025-12-13 16:10:59] 2025-12-13 15:10:59,705 [wrapper] ==== wrapper stderr END ====
[2025-12-13 16:10:59]  *** Error codes and diagnostics ***
[2025-12-13 16:10:59]     "exeErrorCode": 0,
[2025-12-13 16:10:59]     "exeErrorDiag": "",
[2025-12-13 16:10:59]     "pilotErrorCode": 0,
[2025-12-13 16:10:59]     "pilotErrorDiag": "",
[2025-12-13 16:10:59]  *** Listing of results directory ***
[2025-12-13 16:10:59] total 399144
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:51 pilot3.tar.gz
[2025-12-13 16:10:59] -rwx------ 1 boinc boinc     36322 Dec 13 10:00 runpilot2-wrapper.sh
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc      5112 Dec 13 10:00 queuedata.json
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc       100 Dec 13 14:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 16:10:59] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 14:35 run_atlas
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc       105 Dec 13 14:35 job.xml
[2025-12-13 16:10:59] -rw-r--r-- 2 boinc boinc 211968220 Dec 13 14:35 EVNT.47898779._000077.pool.root.1
[2025-12-13 16:10:59] -rw-r--r-- 2 boinc boinc    592388 Dec 13 14:35 input.tar.gz
[2025-12-13 16:10:59] -rw-r--r-- 2 boinc boinc     15847 Dec 13 14:35 start_atlas.sh
[2025-12-13 16:10:59] drwxrwx--x 2 boinc boinc      4096 Dec 13 14:35 shared
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc         0 Dec 13 14:35 boinc_setup_complete
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc      6378 Dec 13 14:35 init_data.xml
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc         0 Dec 13 14:35 boinc_lockfile
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc      2520 Dec 13 14:35 pandaJob.out
[2025-12-13 16:10:59] -rw------- 1 boinc boinc    991736 Dec 13 14:35 agis_schedconf.cvmfs.json
[2025-12-13 16:10:59] -rw------- 1 boinc boinc   1516240 Dec 13 14:35 agis_ddmendpoints.agis.ALL.json
[2025-12-13 16:10:59] drwx------ 5 boinc boinc      4096 Dec 13 14:35 pilot3
[2025-12-13 16:10:59] -rw------- 1 boinc boinc 190654176 Dec 13 16:09 HITS.47898782._001656.pool.root.1
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc       529 Dec 13 16:10 boinc_task_state.xml
[2025-12-13 16:10:59] -rw------- 1 boinc boinc      1019 Dec 13 16:10 memory_monitor_summary.json
[2025-12-13 16:10:59] -rw------- 1 boinc boinc        95 Dec 13 16:10 pilot_heartbeat.json
[2025-12-13 16:10:59] -rw------- 1 boinc boinc    266491 Dec 13 16:10 log.47898782._001656.job.log.tgz.1
[2025-12-13 16:10:59] -rw------- 1 boinc boinc      7757 Dec 13 16:10 heartbeat.json
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc      8192 Dec 13 16:10 boinc_mmap_file
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc        27 Dec 13 16:10 wrapper_checkpoint.txt
[2025-12-13 16:10:59] -rw------- 1 boinc boinc      4823 Dec 13 16:10 pilotlog.txt
[2025-12-13 16:10:59] -rw------- 1 boinc boinc    826798 Dec 13 16:10 log.47898782._001656.job.log.1
[2025-12-13 16:10:59] -rw------- 1 boinc boinc       357 Dec 13 16:10 output.list
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc       620 Dec 13 16:10 runtime_log
[2025-12-13 16:10:59] -rw------- 1 boinc boinc   1116160 Dec 13 16:10 result.tar.gz
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc      8902 Dec 13 16:10 runtime_log.err
[2025-12-13 16:10:59] -rw------- 1 boinc boinc       659 Dec 13 16:10 qAKNDmRfao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSOOKDm8CRpmm.diag
[2025-12-13 16:10:59] -rw-r--r-- 1 boinc boinc     11397 Dec 13 16:10 stderr.txt
[2025-12-13 16:10:59] HITS file was successfully produced:
[2025-12-13 16:10:59] -rw------- 1 boinc boinc 190654176 Dec 13 16:09 shared/HITS.pool.root.1
[2025-12-13 16:10:59]  *** Contents of shared directory: ***
[2025-12-13 16:10:59] total 394888
[2025-12-13 16:10:59] -rw-r--r-- 2 boinc boinc 211968220 Dec 13 14:35 ATLAS.root_0
[2025-12-13 16:10:59] -rw-r--r-- 2 boinc boinc    592388 Dec 13 14:35 input.tar.gz
[2025-12-13 16:10:59] -rw-r--r-- 2 boinc boinc     15847 Dec 13 14:35 start_atlas.sh
[2025-12-13 16:10:59] -rw------- 1 boinc boinc 190654176 Dec 13 16:09 HITS.pool.root.1
[2025-12-13 16:10:59] -rw------- 1 boinc boinc   1116160 Dec 13 16:10 result.tar.gz
16:11:01 (143693): run_atlas exited; CPU time 21557.427488
16:11:01 (143693): called boinc_finish(0)

</stderr_txt>
]]>

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