Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:54:14 (3634568): wrapper (7.7.26015): starting
05:54:14 (3634568): wrapper: running run_atlas (--nthreads 4)
[2025-12-14 05:54:14] Arguments: --nthreads 4
[2025-12-14 05:54:14] Threads: 4
[2025-12-14 05:54:14] Checking for CVMFS
[2025-12-14 05:54:14] No cvmfs_config command found, will try listing directly
[2025-12-14 05:54:14] CVMFS is ok
[2025-12-14 05:54:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-14 05:54:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-14 05:54:14] Further information can be found at the LHC@home message board.
[2025-12-14 05:54:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-14 05:54:14] Checking for apptainer binary...
[2025-12-14 05:54:14] which: no apptainer in ((null))
[2025-12-14 05:54:14] apptainer is not installed, using version from CVMFS
[2025-12-14 05:54:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-14 05:54:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-12-14 05:54:14] apptainer works
[2025-12-14 05:54:14] Set ATHENA_PROC_NUMBER=4
[2025-12-14 05:54:14] Set ATHENA_CORE_NUMBER=4
[2025-12-14 05:54:14] Starting ATLAS job with PandaID=6929222739
[2025-12-14 05:54:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-14 09:24:18]  *** The last 200 lines of the pilot log: ***
[2025-12-14 09:24:18] 2025-12-14 08:21:06,960 | INFO     | intersect: 2447875377.185702
[2025-12-14 09:24:18] 2025-12-14 08:21:06,961 | INFO     | chi2: 1.414313350802593
[2025-12-14 09:24:18] 2025-12-14 08:21:06,961 | INFO     | current chi2=1.414313350802593 (change=0.15285048833215628 %)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,961 | INFO     | right removable region: 197
[2025-12-14 09:24:18] 2025-12-14 08:21:06,961 | INFO     | sum of square deviations: 2406921561.49495
[2025-12-14 09:24:18] 2025-12-14 08:21:06,962 | INFO     | sum of deviations: -22783538484.7879
[2025-12-14 09:24:18] 2025-12-14 08:21:06,963 | INFO     | mean x: 1765694413.5050504
[2025-12-14 09:24:18] 2025-12-14 08:21:06,963 | INFO     | mean y: 2353672.787878788
[2025-12-14 09:24:18] 2025-12-14 08:21:06,963 | INFO     | intersect: 16716137481.131447
[2025-12-14 09:24:18] 2025-12-14 08:21:06,963 | INFO     | chi2: 0.21625706285990326
[2025-12-14 09:24:18] 2025-12-14 08:21:06,963 | INFO     | current chi2=0.21625706285990326 (change=84.73276712259448 %)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,964 | INFO     | sum of square deviations: 2229141178.994829
[2025-12-14 09:24:18] 2025-12-14 08:21:06,965 | INFO     | sum of deviations: -12624286411.787561
[2025-12-14 09:24:18] 2025-12-14 08:21:06,965 | INFO     | mean x: 1765694566.0051813
[2025-12-14 09:24:18] 2025-12-14 08:21:06,965 | INFO     | mean y: 2344952.787564767
[2025-12-14 09:24:18] 2025-12-14 08:21:06,965 | INFO     | intersect: 10001995996.440935
[2025-12-14 09:24:18] 2025-12-14 08:21:06,966 | INFO     | chi2: 0.14302490085281966
[2025-12-14 09:24:18] 2025-12-14 08:21:06,966 | INFO     | current chi2=0.14302490085281966 (change=33.8634775847877 %)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,966 | INFO     | sum of square deviations: 2060337708.9946816
[2025-12-14 09:24:18] 2025-12-14 08:21:06,967 | INFO     | sum of deviations: -2930667237.984044
[2025-12-14 09:24:18] 2025-12-14 08:21:06,968 | INFO     | mean x: 1765694718.505319
[2025-12-14 09:24:18] 2025-12-14 08:21:06,968 | INFO     | mean y: 2336215.484042553
[2025-12-14 09:24:18] 2025-12-14 08:21:06,968 | INFO     | intersect: 2513897131.5485826
[2025-12-14 09:24:18] 2025-12-14 08:21:06,968 | INFO     | chi2: 0.05201278430526096
[2025-12-14 09:24:18] 2025-12-14 08:21:06,968 | INFO     | current chi2=0.05201278430526096 (change=63.63375608364523 %)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,969 | INFO     | sum of square deviations: 1900278588.9945261
[2025-12-14 09:24:18] 2025-12-14 08:21:06,970 | INFO     | sum of deviations: 2187730123.825137
[2025-12-14 09:24:18] 2025-12-14 08:21:06,970 | INFO     | mean x: 1765694871.0054646
[2025-12-14 09:24:18] 2025-12-14 08:21:06,970 | INFO     | mean y: 2331337.174863388
[2025-12-14 09:24:18] 2025-12-14 08:21:06,970 | INFO     | intersect: -2030456845.1232436
[2025-12-14 09:24:18] 2025-12-14 08:21:06,970 | INFO     | chi2: 0.02282392530861791
[2025-12-14 09:24:18] 2025-12-14 08:21:06,971 | INFO     | current chi2=0.02282392530861791 (change=56.118624270015616 %)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,971 | INFO     | sum of square deviations: 1748731256.4943824
[2025-12-14 09:24:18] 2025-12-14 08:21:06,972 | INFO     | sum of deviations: 5057325076.741574
[2025-12-14 09:24:18] 2025-12-14 08:21:06,972 | INFO     | mean x: 1765695023.505618
[2025-12-14 09:24:18] 2025-12-14 08:21:06,972 | INFO     | mean y: 2328487.758426966
[2025-12-14 09:24:18] 2025-12-14 08:21:06,972 | INFO     | intersect: -5104055747.720841
[2025-12-14 09:24:18] 2025-12-14 08:21:06,973 | INFO     | chi2: 0.0009058152190779011
[2025-12-14 09:24:18] 2025-12-14 08:21:06,973 | INFO     | current chi2=0.0009058152190779011 (change=96.03129081948107 %)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,973 | INFO     | sum of square deviations: 1605463148.994215
[2025-12-14 09:24:18] 2025-12-14 08:21:06,974 | INFO     | sum of deviations: 4483407216.445088
[2025-12-14 09:24:18] 2025-12-14 08:21:06,974 | INFO     | mean x: 1765695176.0057805
[2025-12-14 09:24:18] 2025-12-14 08:21:06,974 | INFO     | mean y: 2329098.554913295
[2025-12-14 09:24:18] 2025-12-14 08:21:06,974 | INFO     | intersect: -4928541160.974863
[2025-12-14 09:24:18] 2025-12-14 08:21:06,975 | INFO     | chi2: 0.0008693198036509618
[2025-12-14 09:24:18] 2025-12-14 08:21:06,975 | INFO     | current chi2=0.0008693198036509618 (change=4.029013275366565 %)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,975 | INFO     | left removable region: 60
[2025-12-14 09:24:18] 2025-12-14 08:21:06,975 | INFO     | sum of square deviations: 797291228.0
[2025-12-14 09:24:18] 2025-12-14 08:21:06,976 | INFO     | sum of deviations: 2185346106.0
[2025-12-14 09:24:18] 2025-12-14 08:21:06,976 | INFO     | mean x: 1765695908.0
[2025-12-14 09:24:18] 2025-12-14 08:21:06,976 | INFO     | mean y: 2330746.9562043794
[2025-12-14 09:24:18] 2025-12-14 08:21:06,976 | INFO     | intersect: -4837377180.857513
[2025-12-14 09:24:18] 2025-12-14 08:21:06,977 | INFO     | chi2: 0.00017513288590955791
[2025-12-14 09:24:18] 2025-12-14 08:21:06,977 | INFO     | current memory leak: 2.74 B/s (using 137 data points, chi2=0.00)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | could have reported an average CPU frequency of 2567 MHz (10 samples)
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | ..............................
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | . Timing measurements:
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | . get job = 0 s
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | . initial setup = 1 s
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | . payload setup = 6 s
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | . stage-in = 0 s
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | . payload execution = 12359 s
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | . stage-out = 1 s
[2025-12-14 09:24:18] 2025-12-14 08:21:06,978 | INFO     | . log creation = 0 s
[2025-12-14 09:24:18] 2025-12-14 08:21:06,979 | INFO     | ..............................
[2025-12-14 09:24:18] 2025-12-14 08:21:07,076 | INFO     | 
[2025-12-14 09:24:18] 2025-12-14 08:21:07,076 | INFO     | job summary report
[2025-12-14 09:24:18] 2025-12-14 08:21:07,076 | INFO     | --------------------------------------------------
[2025-12-14 09:24:18] 2025-12-14 08:21:07,076 | INFO     | PanDA job id: 6929222739
[2025-12-14 09:24:18] 2025-12-14 08:21:07,076 | INFO     | task id: 47886831
[2025-12-14 09:24:18] 2025-12-14 08:21:07,076 | INFO     | errors: (none)
[2025-12-14 09:24:18] 2025-12-14 08:21:07,076 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | pilot state: finished 
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | transexitcode: 0
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | exeerrorcode: 0
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | exeerrordiag: 
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | exitcode: 0
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | exitmsg: OK
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | cpuconsumptiontime: 46629 s
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | nevents: 400
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | neventsw: 0
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | pid: 3645663
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | pgrp: 3645663
[2025-12-14 09:24:18] 2025-12-14 08:21:07,077 | INFO     | corecount: 4
[2025-12-14 09:24:18] 2025-12-14 08:21:07,078 | INFO     | event service: False
[2025-12-14 09:24:18] 2025-12-14 08:21:07,078 | INFO     | sizes: {0: 2283773, 1: 2284028, 6: 2284290, 12: 2284318, 12370: 2314166, 12371: 2323370, 12381: 2323508}
[2025-12-14 09:24:18] 2025-12-14 08:21:07,078 | INFO     | --------------------------------------------------
[2025-12-14 09:24:18] 2025-12-14 08:21:07,078 | INFO     | 
[2025-12-14 09:24:18] 2025-12-14 08:21:07,078 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-12-14 09:24:18] 2025-12-14 08:21:07,102 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,102 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,102 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,102 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,104 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-14 09:24:18] 2025-12-14 08:21:07,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,104 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-14 09:24:18] 2025-12-14 08:21:07,104 | INFO     | job 6929222739 has completed (purged errors)
[2025-12-14 09:24:18] 2025-12-14 08:21:07,104 | INFO     | overall cleanup function is called
[2025-12-14 09:24:18] 2025-12-14 08:21:08,112 | INFO     | --- collectZombieJob: --- 10, [3645663]
[2025-12-14 09:24:18] 2025-12-14 08:21:08,112 | INFO     | zombie collector waiting for pid 3645663
[2025-12-14 09:24:18] 2025-12-14 08:21:08,112 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-14 09:24:18] 2025-12-14 08:21:08,113 | INFO     | collected zombie processes
[2025-12-14 09:24:18] 2025-12-14 08:21:08,113 | INFO     | will attempt to kill all subprocesses of pid=3645663
[2025-12-14 09:24:18] 2025-12-14 08:21:08,531 | INFO     | process IDs to be killed: [3645663] (in reverse order)
[2025-12-14 09:24:18] 2025-12-14 08:21:08,653 | WARNING  | found no corresponding commands to process id(s)
[2025-12-14 09:24:18] 2025-12-14 08:21:08,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-14 09:24:18] 2025-12-14 08:21:08,667 | INFO     | did not find any defunct processes belonging to 3645663
[2025-12-14 09:24:18] 2025-12-14 08:21:08,681 | INFO     | did not find any defunct processes belonging to 3645663
[2025-12-14 09:24:18] 2025-12-14 08:21:08,681 | INFO     | ready for new job
[2025-12-14 09:24:18] 2025-12-14 08:21:08,681 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-14 09:24:18] 2025-12-14 08:21:08,684 | INFO     | ***************************************
[2025-12-14 09:24:18] 2025-12-14 08:21:08,684 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-14 09:24:18] 2025-12-14 08:21:08,684 | INFO     | ***************************************
[2025-12-14 09:24:18] 2025-12-14 08:21:08,684 | INFO     | 
[2025-12-14 09:24:18] 2025-12-14 08:21:08,688 | INFO     | architecture information:
[2025-12-14 09:24:18] 2025-12-14 08:21:08,689 | INFO     | executing command: cat /etc/os-release
[2025-12-14 09:24:18] 2025-12-14 08:21:08,704 | INFO     | cat /etc/os-release:
[2025-12-14 09:24:18] NAME="CentOS Linux"
[2025-12-14 09:24:18] VERSION="7 (Core)"
[2025-12-14 09:24:18] ID="centos"
[2025-12-14 09:24:18] ID_LIKE="rhel fedora"
[2025-12-14 09:24:18] VERSION_ID="7"
[2025-12-14 09:24:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-14 09:24:18] ANSI_COLOR="0;31"
[2025-12-14 09:24:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-14 09:24:18] HOME_URL="https://www.centos.org/"
[2025-12-14 09:24:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-14 09:24:18] 
[2025-12-14 09:24:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-14 09:24:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-14 09:24:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-14 09:24:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-14 09:24:18] 
[2025-12-14 09:24:18] 2025-12-14 08:21:08,705 | INFO     | ***************************************
[2025-12-14 09:24:18] 2025-12-14 08:21:09,207 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-12-14 09:24:18] 2025-12-14 08:21:09,224 | INFO     | sufficient remaining disk space (689843470336 B)
[2025-12-14 09:24:18] 2025-12-14 08:21:09,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-14 09:24:18] 2025-12-14 08:21:09,224 | INFO     | current server update state: UPDATING_FINAL
[2025-12-14 09:24:18] 2025-12-14 08:21:09,224 | INFO     | update_server=False
[2025-12-14 09:24:18] 2025-12-14 08:21:09,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-14 09:24:18] 2025-12-14 08:21:09,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-14 09:24:18] 2025-12-14 08:21:09,225 | INFO     | aborting loop
[2025-12-14 09:24:18] 2025-12-14 08:21:09,268 | INFO     | all data control threads have been joined
[2025-12-14 09:24:18] 2025-12-14 08:21:09,342 | INFO     | all payload control threads have been joined
[2025-12-14 09:24:18] 2025-12-14 08:21:10,230 | INFO     | [job] retrieve thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:10,230 | INFO     | [job] job monitor thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:10,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-14 09:24:18] 2025-12-14 08:21:10,273 | INFO     | [data] control thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:10,282 | INFO     | all job control threads have been joined
[2025-12-14 09:24:18] 2025-12-14 08:21:10,325 | INFO     | [job] validate thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:10,348 | INFO     | [payload] control thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:10,463 | INFO     | [job] create_data_payload thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:10,583 | INFO     | [payload] validate_pre thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:10,584 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:10,997 | INFO     | [data] copytool_in thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:11,245 | INFO     | [payload] failed_post thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:11,287 | INFO     | [job] control thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:11,494 | INFO     | [payload] validate_post thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:11,633 | INFO     | [payload] execute_payloads thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:12,086 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-14 09:24:18] 2025-12-14 08:21:12,269 | INFO     | [data] copytool_out thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:12,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-14 09:24:18] 2025-12-14 08:21:13,091 | INFO     | [job] queue monitor thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:16,365 | INFO     | [data] queue_monitor thread has finished
[2025-12-14 09:24:18] 2025-12-14 08:21:39,508 | INFO     | PID=3638700 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-14 09:24:18] 2025-12-14 08:21:39,508 | INFO     | .. there are 5 such processes running
[2025-12-14 09:24:18] 2025-12-14 08:21:39,509 | INFO     | found 0 job(s) in 20 queues
[2025-12-14 09:24:18] 2025-12-14 08:21:39,509 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-14 09:24:18] 2025-12-14 08:21:39,509 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-14 09:24:18] 2025-12-14 08:21:49,471 | INFO     | [monitor] cgroup control has ended
[2025-12-14 09:24:18] 2025-12-14 08:21:51,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22701994628928)>', '<ExcThread(monitor, started 22701756348160)>']
[2025-12-14 09:24:18] 2025-12-14 08:21:51,558 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-14 09:24:18] 2025-12-14 08:21:51,559 | INFO     | [monitor] control thread has ended
[2025-12-14 09:24:18] 2025-12-14 08:21:56,043 | INFO     | all workflow threads have been joined
[2025-12-14 09:24:18] 2025-12-14 08:21:56,043 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-14 09:24:18] 2025-12-14 08:21:56,044 | INFO     | traces error code: 0
[2025-12-14 09:24:18] 2025-12-14 08:21:56,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-14 09:24:18] 2025-12-14 08:21:56,217 [wrapper] ==== pilot stdout END ====
[2025-12-14 09:24:18] 2025-12-14 08:21:56,220 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-14 09:24:18] 2025-12-14 08:21:56,222 [wrapper] pilotpid: 3638700
[2025-12-14 09:24:18] 2025-12-14 08:21:56,225 [wrapper] Pilot exit status: 0
[2025-12-14 09:24:18] 2025-12-14 08:21:56,237 [wrapper] pandaids: 6929222739
[2025-12-14 09:24:18] 2025-12-14 08:21:56,324 [wrapper] cleanup supervisor_pilot 3869121 3638701
[2025-12-14 09:24:18] 2025-12-14 08:21:56,328 [wrapper] Test setup, not cleaning
[2025-12-14 09:24:18] 2025-12-14 08:21:56,331 [wrapper] apfmon messages muted
[2025-12-14 09:24:18] 2025-12-14 08:21:56,334 [wrapper] ==== wrapper stdout END ====
[2025-12-14 09:24:18] 2025-12-14 08:21:56,337 [wrapper] ==== wrapper stderr END ====
[2025-12-14 09:24:18]  *** Error codes and diagnostics ***
[2025-12-14 09:24:18]     "exeErrorCode": 0,
[2025-12-14 09:24:18]     "exeErrorDiag": "",
[2025-12-14 09:24:18]     "pilotErrorCode": 0,
[2025-12-14 09:24:18]     "pilotErrorDiag": "",
[2025-12-14 09:24:18]  *** Listing of results directory ***
[2025-12-14 09:24:18] total 340748
[2025-12-14 09:24:18] -rwx------ 1 boinc boinc     36322 Dec 13 09:51 runpilot2-wrapper.sh
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:51 pilot3.tar.gz
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc      5112 Dec 13 09:53 queuedata.json
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc       100 Dec 14 05:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-14 09:24:18] -rwxr-xr-x 1 boinc boinc      7986 Dec 14 05:54 run_atlas
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc       105 Dec 14 05:54 job.xml
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc      6638 Dec 14 05:54 init_data.xml
[2025-12-14 09:24:18] -rw-r--r-- 2 boinc boinc 191272704 Dec 14 05:54 EVNT.47886829._000188.pool.root.1
[2025-12-14 09:24:18] -rw-r--r-- 2 boinc boinc     15847 Dec 14 05:54 start_atlas.sh
[2025-12-14 09:24:18] drwxrwx--x 2 boinc boinc      4096 Dec 14 05:54 shared
[2025-12-14 09:24:18] -rw-r--r-- 2 boinc boinc    592416 Dec 14 05:54 input.tar.gz
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc         0 Dec 14 05:54 boinc_lockfile
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc      2537 Dec 14 05:54 pandaJob.out
[2025-12-14 09:24:18] -rw------- 1 boinc boinc    991728 Dec 14 05:54 agis_schedconf.cvmfs.json
[2025-12-14 09:24:18] drwx------ 5 boinc boinc      4096 Dec 14 05:54 pilot3
[2025-12-14 09:24:18] -rw------- 1 boinc boinc 149458352 Dec 14 09:20 HITS.47886831._004704.pool.root.1
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc       528 Dec 14 09:20 boinc_task_state.xml
[2025-12-14 09:24:18] -rw------- 1 boinc boinc      1035 Dec 14 09:20 memory_monitor_summary.json
[2025-12-14 09:24:18] -rw------- 1 boinc boinc   1516240 Dec 14 09:20 agis_ddmendpoints.agis.ALL.json
[2025-12-14 09:24:18] -rw------- 1 boinc boinc    392876 Dec 14 09:20 log.47886831._004704.job.log.tgz.1
[2025-12-14 09:24:18] -rw------- 1 boinc boinc      7827 Dec 14 09:21 heartbeat.json
[2025-12-14 09:24:18] -rw------- 1 boinc boinc        95 Dec 14 09:21 pilot_heartbeat.json
[2025-12-14 09:24:18] -rw------- 1 boinc boinc      4833 Dec 14 09:21 pilotlog.txt
[2025-12-14 09:24:18] -rw------- 1 boinc boinc   1743718 Dec 14 09:21 log.47886831._004704.job.log.1
[2025-12-14 09:24:18] -rw------- 1 boinc boinc       357 Dec 14 09:21 output.list
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc       620 Dec 14 09:21 runtime_log
[2025-12-14 09:24:18] -rw------- 1 boinc boinc   2160640 Dec 14 09:21 result.tar.gz
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc      9206 Dec 14 09:21 runtime_log.err
[2025-12-14 09:24:18] -rw------- 1 boinc boinc       666 Dec 14 09:21 DkVMDmKWao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrMOKDmpIURWo.diag
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc        26 Dec 14 09:23 wrapper_checkpoint.txt
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc      8192 Dec 14 09:24 boinc_mmap_file
[2025-12-14 09:24:18] -rw-r--r-- 1 boinc boinc     20787 Dec 14 09:24 stderr.txt
[2025-12-14 09:24:18] HITS file was successfully produced:
[2025-12-14 09:24:18] -rw------- 1 boinc boinc 149458352 Dec 14 09:20 shared/HITS.pool.root.1
[2025-12-14 09:24:18]  *** Contents of shared directory: ***
[2025-12-14 09:24:18] total 335464
[2025-12-14 09:24:18] -rw-r--r-- 2 boinc boinc 191272704 Dec 14 05:54 ATLAS.root_0
[2025-12-14 09:24:18] -rw-r--r-- 2 boinc boinc     15847 Dec 14 05:54 start_atlas.sh
[2025-12-14 09:24:18] -rw-r--r-- 2 boinc boinc    592416 Dec 14 05:54 input.tar.gz
[2025-12-14 09:24:18] -rw------- 1 boinc boinc 149458352 Dec 14 09:20 HITS.pool.root.1
[2025-12-14 09:24:18] -rw------- 1 boinc boinc   2160640 Dec 14 09:21 result.tar.gz
09:24:20 (3634568): run_atlas exited; CPU time 47197.723984
09:24:20 (3634568): called boinc_finish(0)

</stderr_txt>
]]>

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