Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:24:41 (2409344): wrapper (7.7.26015): starting
12:24:41 (2409344): wrapper: running run_atlas (--nthreads 4)
[2025-12-13 12:24:41] Arguments: --nthreads 4
[2025-12-13 12:24:41] Threads: 4
[2025-12-13 12:24:41] Checking for CVMFS
[2025-12-13 12:24:41] No cvmfs_config command found, will try listing directly
[2025-12-13 12:24:41] CVMFS is ok
[2025-12-13 12:24:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-13 12:24:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-13 12:24:41] Further information can be found at the LHC@home message board.
[2025-12-13 12:24:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-13 12:24:41] Checking for apptainer binary...
[2025-12-13 12:24:41] which: no apptainer in ((null))
[2025-12-13 12:24:41] apptainer is not installed, using version from CVMFS
[2025-12-13 12:24:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-13 12:24:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-12-13 12:24:42] apptainer works
[2025-12-13 12:24:42] Set ATHENA_PROC_NUMBER=4
[2025-12-13 12:24:42] Set ATHENA_CORE_NUMBER=4
[2025-12-13 12:24:42] Starting ATLAS job with PandaID=6929222700
[2025-12-13 12:24:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-13 17:39:34]  *** The last 200 lines of the pilot log: ***
[2025-12-13 17:39:34] 2025-12-13 15:54:53,418 | INFO     | .. there are 6 such processes running
[2025-12-13 17:39:34] 2025-12-13 15:54:54,420 | INFO     | time since job start (16187s) is within the limit (174528.0s)
[2025-12-13 17:39:34] 2025-12-13 15:54:55,890 | INFO     | monitor loop #1117: job 0:6929222700 is in state 'finished'
[2025-12-13 17:39:34] 2025-12-13 15:54:55,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 17:39:34] 2025-12-13 15:54:56,435 | INFO     | time since job start (16189s) is within the limit (174528.0s)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,398 | INFO     | monitor loop #1118: job 0:6929222700 is in state 'finished'
[2025-12-13 17:39:34] 2025-12-13 15:54:58,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,410 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-13 17:39:34] 2025-12-13 15:54:58,426 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2488.9457812500004
[2025-12-13 17:39:34] 2025-12-13 15:54:58,438 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6929222700/memory_monitor_summary.json (trf name=prmon)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,439 | INFO     | extracted standard info from prmon json
[2025-12-13 17:39:34] 2025-12-13 15:54:58,439 | INFO     | extracted standard memory fields from prmon json
[2025-12-13 17:39:34] 2025-12-13 15:54:58,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-13 17:39:34] 2025-12-13 15:54:58,440 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-13 17:39:34] 2025-12-13 15:54:58,440 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-13 17:39:34] 2025-12-13 15:54:58,445 | INFO     | fitting pss+swap vs Time
[2025-12-13 17:39:34] 2025-12-13 15:54:58,446 | INFO     | sum of square deviations: 5705372090.0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,448 | INFO     | sum of deviations: -62949858259.5
[2025-12-13 17:39:34] 2025-12-13 15:54:58,448 | INFO     | mean x: 1765633194.5
[2025-12-13 17:39:34] 2025-12-13 15:54:58,448 | INFO     | mean y: 2364395.5492424243
[2025-12-13 17:39:34] 2025-12-13 15:54:58,448 | INFO     | intersect: 19483365385.274914
[2025-12-13 17:39:34] 2025-12-13 15:54:58,449 | INFO     | chi2: 1.8698650025775483
[2025-12-13 17:39:34] 2025-12-13 15:54:58,449 | INFO     | sum of square deviations: 5387301010.0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,451 | INFO     | sum of deviations: -61436368562.999985
[2025-12-13 17:39:34] 2025-12-13 15:54:58,451 | INFO     | mean x: 1765633042.0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,451 | INFO     | mean y: 2365121.281853282
[2025-12-13 17:39:34] 2025-12-13 15:54:58,452 | INFO     | intersect: 20137509252.632854
[2025-12-13 17:39:34] 2025-12-13 15:54:58,452 | INFO     | chi2: 1.8649567786783068
[2025-12-13 17:39:34] 2025-12-13 15:54:58,452 | INFO     | current chi2=1.8649567786783068 (change=0.2624908157795176 %)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,452 | INFO     | right removable region: 258
[2025-12-13 17:39:34] 2025-12-13 15:54:58,452 | INFO     | sum of square deviations: 5387301010.0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,454 | INFO     | sum of deviations: -93630369124.0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,454 | INFO     | mean x: 1765633347.0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,455 | INFO     | mean y: 2378932.131274131
[2025-12-13 17:39:34] 2025-12-13 15:54:58,455 | INFO     | intersect: 30688784185.966087
[2025-12-13 17:39:34] 2025-12-13 15:54:58,455 | INFO     | chi2: 0.5314658015330668
[2025-12-13 17:39:34] 2025-12-13 15:54:58,455 | INFO     | current chi2=0.5314658015330668 (change=71.5773170362321 %)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,456 | INFO     | sum of square deviations: 5081276667.5
[2025-12-13 17:39:34] 2025-12-13 15:54:58,457 | INFO     | sum of deviations: -82282271425.49997
[2025-12-13 17:39:34] 2025-12-13 15:54:58,457 | INFO     | mean x: 1765633499.5
[2025-12-13 17:39:34] 2025-12-13 15:54:58,458 | INFO     | mean y: 2373265.9803149607
[2025-12-13 17:39:34] 2025-12-13 15:54:58,458 | INFO     | intersect: 28593679024.438972
[2025-12-13 17:39:34] 2025-12-13 15:54:58,458 | INFO     | chi2: 0.510103812788175
[2025-12-13 17:39:34] 2025-12-13 15:54:58,458 | INFO     | current chi2=0.510103812788175 (change=4.019447475881044 %)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,458 | INFO     | left removable region: 20
[2025-12-13 17:39:34] 2025-12-13 15:54:58,459 | INFO     | sum of square deviations: 4180243959.5
[2025-12-13 17:39:34] 2025-12-13 15:54:58,460 | INFO     | sum of deviations: -54254344676.49999
[2025-12-13 17:39:34] 2025-12-13 15:54:58,460 | INFO     | mean x: 1765633621.5
[2025-12-13 17:39:34] 2025-12-13 15:54:58,461 | INFO     | mean y: 2360019.9285714286
[2025-12-13 17:39:34] 2025-12-13 15:54:58,461 | INFO     | intersect: 22918078815.61718
[2025-12-13 17:39:34] 2025-12-13 15:54:58,461 | INFO     | chi2: 0.417286039578309
[2025-12-13 17:39:34] 2025-12-13 15:54:58,461 | INFO     | current memory leak: -12.98 B/s (using 238 data points, chi2=0.42)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,462 | INFO     | could have reported an average CPU frequency of 2457 MHz (12 samples)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,462 | INFO     | ..............................
[2025-12-13 17:39:34] 2025-12-13 15:54:58,462 | INFO     | . Timing measurements:
[2025-12-13 17:39:34] 2025-12-13 15:54:58,462 | INFO     | . get job = 0 s
[2025-12-13 17:39:34] 2025-12-13 15:54:58,462 | INFO     | . initial setup = 2 s
[2025-12-13 17:39:34] 2025-12-13 15:54:58,462 | INFO     | . payload setup = 15 s
[2025-12-13 17:39:34] 2025-12-13 15:54:58,463 | INFO     | . stage-in = 0 s
[2025-12-13 17:39:34] 2025-12-13 15:54:58,463 | INFO     | . payload execution = 16112 s
[2025-12-13 17:39:34] 2025-12-13 15:54:58,463 | INFO     | . stage-out = 1 s
[2025-12-13 17:39:34] 2025-12-13 15:54:58,463 | INFO     | . log creation = 0 s
[2025-12-13 17:39:34] 2025-12-13 15:54:58,463 | INFO     | ..............................
[2025-12-13 17:39:34] 2025-12-13 15:54:58,471 | INFO     | time since job start (16191s) is within the limit (174528.0s)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,566 | INFO     | 
[2025-12-13 17:39:34] 2025-12-13 15:54:58,566 | INFO     | job summary report
[2025-12-13 17:39:34] 2025-12-13 15:54:58,566 | INFO     | --------------------------------------------------
[2025-12-13 17:39:34] 2025-12-13 15:54:58,566 | INFO     | PanDA job id: 6929222700
[2025-12-13 17:39:34] 2025-12-13 15:54:58,566 | INFO     | task id: 47886831
[2025-12-13 17:39:34] 2025-12-13 15:54:58,566 | INFO     | errors: (none)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,566 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | pilot state: finished 
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | transexitcode: 0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | exeerrorcode: 0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | exeerrordiag: 
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | exitcode: 0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | exitmsg: OK
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | cpuconsumptiontime: 52235 s
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | nevents: 400
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | neventsw: 0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | pid: 2422980
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | pgrp: 2422980
[2025-12-13 17:39:34] 2025-12-13 15:54:58,567 | INFO     | corecount: 4
[2025-12-13 17:39:34] 2025-12-13 15:54:58,568 | INFO     | event service: False
[2025-12-13 17:39:34] 2025-12-13 15:54:58,568 | INFO     | sizes: {0: 2283829, 1: 2284028, 12: 2284028, 15: 2284318, 23: 2284346, 16132: 2316474, 16134: 2325494, 16135: 2325550, 16155: 2325744}
[2025-12-13 17:39:34] 2025-12-13 15:54:58,568 | INFO     | --------------------------------------------------
[2025-12-13 17:39:34] 2025-12-13 15:54:58,568 | INFO     | 
[2025-12-13 17:39:34] 2025-12-13 15:54:58,568 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-12-13 17:39:34] 2025-12-13 15:54:58,595 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,597 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,597 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,597 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,597 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,598 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,598 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,599 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-13 17:39:34] 2025-12-13 15:54:58,599 | INFO     | job 6929222700 has completed (purged errors)
[2025-12-13 17:39:34] 2025-12-13 15:54:58,599 | INFO     | overall cleanup function is called
[2025-12-13 17:39:34] 2025-12-13 15:54:59,608 | INFO     | --- collectZombieJob: --- 10, [2422980]
[2025-12-13 17:39:34] 2025-12-13 15:54:59,608 | INFO     | zombie collector waiting for pid 2422980
[2025-12-13 17:39:34] 2025-12-13 15:54:59,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-13 17:39:34] 2025-12-13 15:54:59,608 | INFO     | collected zombie processes
[2025-12-13 17:39:34] 2025-12-13 15:54:59,609 | INFO     | will attempt to kill all subprocesses of pid=2422980
[2025-12-13 17:39:34] 2025-12-13 15:55:00,099 | INFO     | process IDs to be killed: [2422980] (in reverse order)
[2025-12-13 17:39:34] 2025-12-13 15:55:00,332 | WARNING  | found no corresponding commands to process id(s)
[2025-12-13 17:39:34] 2025-12-13 15:55:00,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-13 17:39:34] 2025-12-13 15:55:00,351 | INFO     | did not find any defunct processes belonging to 2422980
[2025-12-13 17:39:34] 2025-12-13 15:55:00,369 | INFO     | did not find any defunct processes belonging to 2422980
[2025-12-13 17:39:34] 2025-12-13 15:55:00,370 | INFO     | ready for new job
[2025-12-13 17:39:34] 2025-12-13 15:55:00,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-13 17:39:34] 2025-12-13 15:55:00,373 | INFO     | ***************************************
[2025-12-13 17:39:34] 2025-12-13 15:55:00,373 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-13 17:39:34] 2025-12-13 15:55:00,373 | INFO     | ***************************************
[2025-12-13 17:39:34] 2025-12-13 15:55:00,373 | INFO     | 
[2025-12-13 17:39:34] 2025-12-13 15:55:00,377 | INFO     | architecture information:
[2025-12-13 17:39:34] 2025-12-13 15:55:00,381 | INFO     | executing command: cat /etc/os-release
[2025-12-13 17:39:34] 2025-12-13 15:55:00,405 | INFO     | cat /etc/os-release:
[2025-12-13 17:39:34] NAME="CentOS Linux"
[2025-12-13 17:39:34] VERSION="7 (Core)"
[2025-12-13 17:39:34] ID="centos"
[2025-12-13 17:39:34] ID_LIKE="rhel fedora"
[2025-12-13 17:39:34] VERSION_ID="7"
[2025-12-13 17:39:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-13 17:39:34] ANSI_COLOR="0;31"
[2025-12-13 17:39:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-13 17:39:34] HOME_URL="https://www.centos.org/"
[2025-12-13 17:39:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-13 17:39:34] 
[2025-12-13 17:39:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-13 17:39:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-13 17:39:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-13 17:39:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-13 17:39:34] 
[2025-12-13 17:39:34] 2025-12-13 15:55:00,406 | INFO     | ***************************************
[2025-12-13 17:39:34] 2025-12-13 15:55:00,908 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-12-13 17:39:34] 2025-12-13 15:55:00,931 | INFO     | sufficient remaining disk space (665476661248 B)
[2025-12-13 17:39:34] 2025-12-13 15:55:00,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-13 17:39:34] 2025-12-13 15:55:00,932 | INFO     | current server update state: UPDATING_FINAL
[2025-12-13 17:39:34] 2025-12-13 15:55:00,932 | INFO     | update_server=False
[2025-12-13 17:39:34] 2025-12-13 15:55:00,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-13 17:39:34] 2025-12-13 15:55:00,995 | INFO     | all data control threads have been joined
[2025-12-13 17:39:34] 2025-12-13 15:55:01,291 | INFO     | all payload control threads have been joined
[2025-12-13 17:39:34] 2025-12-13 15:55:01,301 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-13 17:39:34] 2025-12-13 15:55:01,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:39:34] 2025-12-13 15:55:01,906 | INFO     | aborting loop
[2025-12-13 17:39:34] 2025-12-13 15:55:01,937 | INFO     | [job] retrieve thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,000 | INFO     | [data] control thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,004 | INFO     | [job] create_data_payload thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,017 | INFO     | [data] copytool_in thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,082 | INFO     | [payload] execute_payloads thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,119 | INFO     | [payload] failed_post thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,131 | INFO     | [payload] validate_pre thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,286 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,296 | INFO     | [payload] control thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,310 | INFO     | [job] validate thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,343 | INFO     | all job control threads have been joined
[2025-12-13 17:39:34] 2025-12-13 15:55:02,354 | INFO     | [payload] validate_post thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:02,410 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-13 17:39:34] 2025-12-13 15:55:02,911 | INFO     | [job] job monitor thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:03,306 | INFO     | [data] copytool_out thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:03,348 | INFO     | [job] control thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:03,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-13 17:39:34] 2025-12-13 15:55:04,585 | INFO     | [job] queue monitor thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:06,330 [wrapper] supervise_pilot (15 min periods counter: 19)
[2025-12-13 17:39:34] 2025-12-13 15:55:06,415 | INFO     | [data] queue_monitor thread has finished
[2025-12-13 17:39:34] 2025-12-13 15:55:32,181 | INFO     | PID=2413636 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-13 17:39:34] 2025-12-13 15:55:32,182 | INFO     | .. there are 6 such processes running
[2025-12-13 17:39:34] 2025-12-13 15:55:32,182 | INFO     | found 0 job(s) in 20 queues
[2025-12-13 17:39:34] 2025-12-13 15:55:32,182 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-13 17:39:34] 2025-12-13 15:55:32,182 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-13 17:39:34] 2025-12-13 15:55:34,610 | INFO     | [monitor] cgroup control has ended
[2025-12-13 17:39:34] 2025-12-13 15:55:36,345 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22911174567744)>', '<ExcThread(monitor, started 22910926272256)>']
[2025-12-13 17:39:34] 2025-12-13 15:55:37,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-13 17:39:34] 2025-12-13 15:55:37,207 | INFO     | [monitor] control thread has ended
[2025-12-13 17:39:34] 2025-12-13 15:55:41,370 | INFO     | all workflow threads have been joined
[2025-12-13 17:39:34] 2025-12-13 15:55:41,370 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-13 17:39:34] 2025-12-13 15:55:41,371 | INFO     | traces error code: 0
[2025-12-13 17:39:34] 2025-12-13 15:55:41,371 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-13 17:39:34] 2025-12-13 15:55:41,558 [wrapper] ==== pilot stdout END ====
[2025-12-13 17:39:34] 2025-12-13 15:55:41,562 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-13 17:39:34] 2025-12-13 15:55:41,565 [wrapper] pilotpid: 2413636
[2025-12-13 17:39:34] 2025-12-13 15:55:41,584 [wrapper] Pilot exit status: 0
[2025-12-13 17:39:34] 2025-12-13 15:55:41,697 [wrapper] pandaids: 6929222700
[2025-12-13 17:39:34] 2025-12-13 15:55:42,014 [wrapper] cleanup supervisor_pilot 2702216 2413637
[2025-12-13 17:39:34] 2025-12-13 15:55:42,019 [wrapper] Test setup, not cleaning
[2025-12-13 17:39:34] 2025-12-13 15:55:42,022 [wrapper] apfmon messages muted
[2025-12-13 17:39:34] 2025-12-13 15:55:42,025 [wrapper] ==== wrapper stdout END ====
[2025-12-13 17:39:34] 2025-12-13 15:55:42,028 [wrapper] ==== wrapper stderr END ====
[2025-12-13 17:39:34]  *** Error codes and diagnostics ***
[2025-12-13 17:39:34]     "exeErrorCode": 0,
[2025-12-13 17:39:34]     "exeErrorDiag": "",
[2025-12-13 17:39:34]     "pilotErrorCode": 0,
[2025-12-13 17:39:34]     "pilotErrorDiag": "",
[2025-12-13 17:39:34]  *** Listing of results directory ***
[2025-12-13 17:39:34] total 340644
[2025-12-13 17:39:34] -rwx------ 1 boinc boinc     36322 Dec 13 09:51 runpilot2-wrapper.sh
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc    579449 Dec 13 09:51 pilot3.tar.gz
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc      5112 Dec 13 09:53 queuedata.json
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc       100 Dec 13 11:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-13 17:39:34] -rwxr-xr-x 1 boinc boinc      7986 Dec 13 11:41 run_atlas
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc       105 Dec 13 11:41 job.xml
[2025-12-13 17:39:34] -rw-r--r-- 2 boinc boinc 191900164 Dec 13 12:24 EVNT.47886829._000187.pool.root.1
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc      6638 Dec 13 12:24 init_data.xml
[2025-12-13 17:39:34] -rw-r--r-- 2 boinc boinc     15847 Dec 13 12:24 start_atlas.sh
[2025-12-13 17:39:34] drwxrwx--x 2 boinc boinc      4096 Dec 13 12:24 shared
[2025-12-13 17:39:34] -rw-r--r-- 2 boinc boinc    592410 Dec 13 12:24 input.tar.gz
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc         0 Dec 13 12:24 boinc_lockfile
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc      2537 Dec 13 12:24 pandaJob.out
[2025-12-13 17:39:34] -rw------- 1 boinc boinc    991728 Dec 13 12:25 agis_schedconf.cvmfs.json
[2025-12-13 17:39:34] drwx------ 5 boinc boinc      4096 Dec 13 12:25 pilot3
[2025-12-13 17:39:34] -rw------- 1 boinc boinc 147678688 Dec 13 16:53 HITS.47886831._004666.pool.root.1
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc       529 Dec 13 16:54 boinc_task_state.xml
[2025-12-13 17:39:34] -rw------- 1 boinc boinc      1047 Dec 13 16:54 memory_monitor_summary.json
[2025-12-13 17:39:34] -rw------- 1 boinc boinc   1516240 Dec 13 16:54 agis_ddmendpoints.agis.ALL.json
[2025-12-13 17:39:34] -rw------- 1 boinc boinc    425687 Dec 13 16:54 log.47886831._004666.job.log.tgz.1
[2025-12-13 17:39:34] -rw------- 1 boinc boinc        95 Dec 13 16:54 pilot_heartbeat.json
[2025-12-13 17:39:34] -rw------- 1 boinc boinc      7828 Dec 13 16:54 heartbeat.json
[2025-12-13 17:39:34] -rw------- 1 boinc boinc      4833 Dec 13 16:55 pilotlog.txt
[2025-12-13 17:39:34] -rw------- 1 boinc boinc   2236328 Dec 13 16:55 log.47886831._004666.job.log.1
[2025-12-13 17:39:34] -rw------- 1 boinc boinc       357 Dec 13 16:55 output.list
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc       620 Dec 13 16:55 runtime_log
[2025-12-13 17:39:34] -rw------- 1 boinc boinc   2682880 Dec 13 16:55 result.tar.gz
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc      9206 Dec 13 16:55 runtime_log.err
[2025-12-13 17:39:34] -rw------- 1 boinc boinc       666 Dec 13 16:55 IP4LDmKWao8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZMOKDmga5Xgn.diag
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc        26 Dec 13 17:39 wrapper_checkpoint.txt
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc      8192 Dec 13 17:39 boinc_mmap_file
[2025-12-13 17:39:34] -rw-r--r-- 1 boinc boinc     21088 Dec 13 17:39 stderr.txt
[2025-12-13 17:39:34] HITS file was successfully produced:
[2025-12-13 17:39:34] -rw------- 1 boinc boinc 147678688 Dec 13 16:53 shared/HITS.pool.root.1
[2025-12-13 17:39:34]  *** Contents of shared directory: ***
[2025-12-13 17:39:34] total 334848
[2025-12-13 17:39:34] -rw-r--r-- 2 boinc boinc 191900164 Dec 13 12:24 ATLAS.root_0
[2025-12-13 17:39:34] -rw-r--r-- 2 boinc boinc     15847 Dec 13 12:24 start_atlas.sh
[2025-12-13 17:39:34] -rw-r--r-- 2 boinc boinc    592410 Dec 13 12:24 input.tar.gz
[2025-12-13 17:39:34] -rw------- 1 boinc boinc 147678688 Dec 13 16:53 HITS.pool.root.1
[2025-12-13 17:39:34] -rw------- 1 boinc boinc   2682880 Dec 13 16:55 result.tar.gz
17:39:36 (2409344): run_atlas exited; CPU time 53028.123051
17:39:36 (2409344): called boinc_finish(0)

</stderr_txt>
]]>

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